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The map label for this gene is ecf [C]

Identifier: 161871007

GI number: 161871007

Start: 2137244

End: 2137831

Strand: Direct

Name: ecf [C]

Synonym: NMCC_2103

Alternate gene names: 161871007

Gene position: 2137244-2137831 (Clockwise)

Preceding gene: 161871006

Following gene: 161871008

Centisome position: 99.25

GC content: 47.28

Gene sequence:

>588_bases
ATGCCGCTACCCGACCTGACCGATGCCGAATTAATAGAGTCGCGTAAACTGCTTCTGCATTTTGCGCGGCTTCAGTTGCC
CGACCACCCTGATTTGGCTGAAGATTTAGTGCAGGAAACATTGCTGTCCGCATACAGCGCAGGCGACAGTTTTCAAGGCA
GGGCACTTGTCAACAGCTGGCTTTTTGCCATATTGAAAAACAAAATTATTGACGCATTACGTCAAATCGGAAGGCAGAGG
AAAGTCTTTACCGCACTGGATGACGAGCTACTGGATGAAGCATTTGAAAGCCATTTTTCCCAAAACGGGCATTGGACGCC
GGAAGGGCAGCCGCAACATTGGAACACTCCGGAAAAATCATTAAACAACAACGAATTCCAAAAAATTCTGCAAAGCTGCC
TATACAACCTGCCTGAAAACACCGCACGGGTATTTACCCTGAAGGAAATACTCGGTTTTTCATCCGACGAAATACAACAA
ATGTGCGGTATCAGCACGTCCAACTACCACACCATTATGCACCGCGCCCGAGAATCATTGCGCCAATGCCTGCAAATCAA
ATGGTTCAACCAAGAAAACCCGAAGTAA

Upstream 100 bases:

>100_bases
GATTATCATCCCCTCCTTGTCCGCCATATCCGAAAATATGGAAGGCAATTCCCCGGGCCAAAACCATCTATCCGCATAAA
ATTACCTTGTTCCCGATACT

Downstream 100 bases:

>100_bases
ACGTTATGAAAAAATGCCGCGATATCGCCCTGCTTCTTTCCAAACATCAGGACCGGGAAACCACCCCGGGCGAGAAGATT
TCCATATACACACACCTGCT

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 194

Protein sequence:

>195_residues
MPLPDLTDAELIESRKLLLHFARLQLPDHPDLAEDLVQETLLSAYSAGDSFQGRALVNSWLFAILKNKIIDALRQIGRQR
KVFTALDDELLDEAFESHFSQNGHWTPEGQPQHWNTPEKSLNNNEFQKILQSCLYNLPENTARVFTLKEILGFSSDEIQQ
MCGISTSNYHTIMHRARESLRQCLQIKWFNQENPK

Sequences:

>Translated_195_residues
MPLPDLTDAELIESRKLLLHFARLQLPDHPDLAEDLVQETLLSAYSAGDSFQGRALVNSWLFAILKNKIIDALRQIGRQR
KVFTALDDELLDEAFESHFSQNGHWTPEGQPQHWNTPEKSLNNNEFQKILQSCLYNLPENTARVFTLKEILGFSSDEIQQ
MCGISTSNYHTIMHRARESLRQCLQIKWFNQENPK
>Mature_194_residues
PLPDLTDAELIESRKLLLHFARLQLPDHPDLAEDLVQETLLSAYSAGDSFQGRALVNSWLFAILKNKIIDALRQIGRQRK
VFTALDDELLDEAFESHFSQNGHWTPEGQPQHWNTPEKSLNNNEFQKILQSCLYNLPENTARVFTLKEILGFSSDEIQQM
CGISTSNYHTIMHRARESLRQCLQIKWFNQENPK

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014289
- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 22549; Mature: 22418

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLPDLTDAELIESRKLLLHFARLQLPDHPDLAEDLVQETLLSAYSAGDSFQGRALVNSW
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
LFAILKNKIIDALRQIGRQRKVFTALDDELLDEAFESHFSQNGHWTPEGQPQHWNTPEKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
LNNNEFQKILQSCLYNLPENTARVFTLKEILGFSSDEIQQMCGISTSNYHTIMHRARESL
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
RQCLQIKWFNQENPK
HHHHHHHHCCCCCCC
>Mature Secondary Structure 
PLPDLTDAELIESRKLLLHFARLQLPDHPDLAEDLVQETLLSAYSAGDSFQGRALVNSW
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
LFAILKNKIIDALRQIGRQRKVFTALDDELLDEAFESHFSQNGHWTPEGQPQHWNTPEKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
LNNNEFQKILQSCLYNLPENTARVFTLKEILGFSSDEIQQMCGISTSNYHTIMHRARESL
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
RQCLQIKWFNQENPK
HHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]