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The map label for this gene is yclF [H]

Identifier: 161870999

GI number: 161870999

Start: 2129889

End: 2131346

Strand: Direct

Name: yclF [H]

Synonym: NMCC_2095

Alternate gene names: 161870999

Gene position: 2129889-2131346 (Clockwise)

Preceding gene: 161870997

Following gene: 161871000

Centisome position: 98.91

GC content: 55.56

Gene sequence:

>1458_bases
ATGTCCCGGCATCCCGCCCCCACCGGAGAAAAAACATTCTTCGGCCACCCCTTCCAGCTTTCCACCCTCTTCCATATCGA
ATTGTGGGAACGTTTTTCATTTTACGGAATGCAGGGCATCCTGCTGATTTACCTCTACTACACCGCCGACAAAGGCGGCT
TGGGCATAGACAAAACCCTCGCCGGCGGCATTGTCGGCGCATACAGCGGCAGCGTGTACCTGTCCACCATTTTGGGGGCG
TGGTTTGCCGACCGAGTATGGGGTGCGGAAAAAACCCTCTTCCTCTCGGGCATCGTCGTGATGCTCGGACACATCGTCCT
TGCCGCCGCCCCGGGCCTGTACGGCCTTTTAATCGGGCTGATATTCATCGCATTGGGCAGCGGCGGCGTGAAATCTACGG
CCAGTTCTATGGTGGGCGCATTATACGAACAGGACGAAATGCGCCCGCTGCGCGATGCGGGATTTTCCATTTTCTACATC
GCCATCAACATCGGCGGCTTCCTGGGCCCGCTGCTGACCGGCCTGCTGCAGGAAAACATCGGTTTCCATTATGGTTTCGG
CGCGGCGGCGGTCGGTATGGCATTCGGCTTGTGGCGTTATTCCCTGGGACGTAAAAACCTGCCCCACCCCACCGTCCCCC
ATCCGCTTTCAAAAGGACAGGGCAAAACTGCGGCCGCCGTCGGCATCGCCCTCATCGCCGCACTTGCAACCGCCATCAAA
ACAGGGCTTGTCAACCTCGACAATTTCTCCGGCATCCTCCTATCTACCGTCATCCTTGCCGTCATCGTCTATTTTACCCG
GCTGCTGACCAACCCCCGCGTCAGTTCCGACAACAAGCGGCATATCATCGCCTACATCCCGCTTTTCCTGACCATCTGTA
TGTTTTGGGCGGTCTGGTTTCAGATTTACACCGTGGCAACCGTCTATTTCGACGAAACCGTCAACCGCACCATCGGTTCG
TTTACCGTGCCCGTCGCCTGGAAAGATTCCATGCAAAGCCTGTGGGTCATCCTGTTTTCCGGACTGATGGCGGCAATGTG
GACAAAAATGGGGCGCAAACAGCCCAAAACCCCGCTGAAATTCGCTATGGCGGTATTTGTTACCGGCGCGTCGTTTTTGG
GATTCGTCCCCTTTATTTCCGCCGGCACGCCGATGCCTATTGCGGTTTTCGCACTGATTGTCCTTGCCATCACGATAGGC
GAACTGATGATTTCCCCGATTGCGCTGTCCATCTCCACCAAAATCGCACCGCCTTTATTCAAAACCCAAATGGTCGCCCT
TAATTTCCTTGCCTTTTCATTAGGCTTCACTTTGGGCGGCGTATTGTTTGAAAAAGGCTATCAGGCGGGCGACGAAATCG
GCTTCTATCGGCTGCTGTTCTACATCGGCGCAGCCACAGGCTTCCTGCTGCTCCTGCTCGTCCCCAAATTGAACAAAATG
CTCGAAGGCACAGACTAA

Upstream 100 bases:

>100_bases
TGAAAATATCGGTTAAAAACCGATTTTCATACAAAAAACACCGCTGCCGTCCGCATCCGTTTCAGACGGTATTGAGAGAA
AATCTTTTAGGAGAACCTTT

Downstream 100 bases:

>100_bases
GTCCCGCCCCGATGCCGTCTGAACCCTTCAGACGGCATTTTTCCGCATAATGAAACCAAACCGTTTCCACCCGACAGGAC
AGGCTCCCCCCAACCGGAAG

Product: peptide transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 485; Mature: 484

Protein sequence:

>485_residues
MSRHPAPTGEKTFFGHPFQLSTLFHIELWERFSFYGMQGILLIYLYYTADKGGLGIDKTLAGGIVGAYSGSVYLSTILGA
WFADRVWGAEKTLFLSGIVVMLGHIVLAAAPGLYGLLIGLIFIALGSGGVKSTASSMVGALYEQDEMRPLRDAGFSIFYI
AINIGGFLGPLLTGLLQENIGFHYGFGAAAVGMAFGLWRYSLGRKNLPHPTVPHPLSKGQGKTAAAVGIALIAALATAIK
TGLVNLDNFSGILLSTVILAVIVYFTRLLTNPRVSSDNKRHIIAYIPLFLTICMFWAVWFQIYTVATVYFDETVNRTIGS
FTVPVAWKDSMQSLWVILFSGLMAAMWTKMGRKQPKTPLKFAMAVFVTGASFLGFVPFISAGTPMPIAVFALIVLAITIG
ELMISPIALSISTKIAPPLFKTQMVALNFLAFSLGFTLGGVLFEKGYQAGDEIGFYRLLFYIGAATGFLLLLLVPKLNKM
LEGTD

Sequences:

>Translated_485_residues
MSRHPAPTGEKTFFGHPFQLSTLFHIELWERFSFYGMQGILLIYLYYTADKGGLGIDKTLAGGIVGAYSGSVYLSTILGA
WFADRVWGAEKTLFLSGIVVMLGHIVLAAAPGLYGLLIGLIFIALGSGGVKSTASSMVGALYEQDEMRPLRDAGFSIFYI
AINIGGFLGPLLTGLLQENIGFHYGFGAAAVGMAFGLWRYSLGRKNLPHPTVPHPLSKGQGKTAAAVGIALIAALATAIK
TGLVNLDNFSGILLSTVILAVIVYFTRLLTNPRVSSDNKRHIIAYIPLFLTICMFWAVWFQIYTVATVYFDETVNRTIGS
FTVPVAWKDSMQSLWVILFSGLMAAMWTKMGRKQPKTPLKFAMAVFVTGASFLGFVPFISAGTPMPIAVFALIVLAITIG
ELMISPIALSISTKIAPPLFKTQMVALNFLAFSLGFTLGGVLFEKGYQAGDEIGFYRLLFYIGAATGFLLLLLVPKLNKM
LEGTD
>Mature_484_residues
SRHPAPTGEKTFFGHPFQLSTLFHIELWERFSFYGMQGILLIYLYYTADKGGLGIDKTLAGGIVGAYSGSVYLSTILGAW
FADRVWGAEKTLFLSGIVVMLGHIVLAAAPGLYGLLIGLIFIALGSGGVKSTASSMVGALYEQDEMRPLRDAGFSIFYIA
INIGGFLGPLLTGLLQENIGFHYGFGAAAVGMAFGLWRYSLGRKNLPHPTVPHPLSKGQGKTAAAVGIALIAALATAIKT
GLVNLDNFSGILLSTVILAVIVYFTRLLTNPRVSSDNKRHIIAYIPLFLTICMFWAVWFQIYTVATVYFDETVNRTIGSF
TVPVAWKDSMQSLWVILFSGLMAAMWTKMGRKQPKTPLKFAMAVFVTGASFLGFVPFISAGTPMPIAVFALIVLAITIGE
LMISPIALSISTKIAPPLFKTQMVALNFLAFSLGFTLGGVLFEKGYQAGDEIGFYRLLFYIGAATGFLLLLLVPKLNKML
EGTD

Specific function: Unknown

COG id: COG3104

COG function: function code E; Dipeptide/tripeptide permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PTR2/POT transporter (TC 2.A.17) family [H]

Homologues:

Organism=Homo sapiens, GI4827008, Length=254, Percent_Identity=30.7086614173228, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI226371746, Length=197, Percent_Identity=34.010152284264, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI226371748, Length=188, Percent_Identity=30.8510638297872, Blast_Score=75, Evalue=9e-14,
Organism=Escherichia coli, GI1787922, Length=501, Percent_Identity=25.1497005988024, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1786927, Length=422, Percent_Identity=29.1469194312796, Blast_Score=138, Evalue=1e-33,
Organism=Escherichia coli, GI1790572, Length=409, Percent_Identity=28.361858190709, Blast_Score=136, Evalue=3e-33,
Organism=Escherichia coli, GI1789911, Length=443, Percent_Identity=25.2821670428894, Blast_Score=112, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI71987453, Length=180, Percent_Identity=32.2222222222222, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17569141, Length=341, Percent_Identity=24.633431085044, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24639583, Length=204, Percent_Identity=27.9411764705882, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24639585, Length=204, Percent_Identity=27.9411764705882, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI28571102, Length=204, Percent_Identity=30.3921568627451, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI28571100, Length=204, Percent_Identity=30.3921568627451, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI28571098, Length=204, Percent_Identity=30.3921568627451, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24639581, Length=204, Percent_Identity=27.9411764705882, Blast_Score=74, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR016196
- InterPro:   IPR000109
- InterPro:   IPR005279
- InterPro:   IPR018456 [H]

Pfam domain/function: PF00854 PTR2 [H]

EC number: NA

Molecular weight: Translated: 52466; Mature: 52335

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: PS50850 MFS ; PS01023 PTR2_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRHPAPTGEKTFFGHPFQLSTLFHIELWERFSFYGMQGILLIYLYYTADKGGLGIDKTL
CCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCHHHHHHEEEEEECCCCCCCCCHHH
AGGIVGAYSGSVYLSTILGAWFADRVWGAEKTLFLSGIVVMLGHIVLAAAPGLYGLLIGL
HCCCHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
IFIALGSGGVKSTASSMVGALYEQDEMRPLRDAGFSIFYIAINIGGFLGPLLTGLLQENI
HHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCEEEEEEEEHHHHHHHHHHHHHHHCC
GFHYGFGAAAVGMAFGLWRYSLGRKNLPHPTVPHPLSKGQGKTAAAVGIALIAALATAIK
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
TGLVNLDNFSGILLSTVILAVIVYFTRLLTNPRVSSDNKRHIIAYIPLFLTICMFWAVWF
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHH
QIYTVATVYFDETVNRTIGSFTVPVAWKDSMQSLWVILFSGLMAAMWTKMGRKQPKTPLK
HHHHHHHHHHHHHHHHHHCCEEECEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
FAMAVFVTGASFLGFVPFISAGTPMPIAVFALIVLAITIGELMISPIALSISTKIAPPLF
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
KTQMVALNFLAFSLGFTLGGVLFEKGYQAGDEIGFYRLLFYIGAATGFLLLLLVPKLNKM
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEGTD
HCCCC
>Mature Secondary Structure 
SRHPAPTGEKTFFGHPFQLSTLFHIELWERFSFYGMQGILLIYLYYTADKGGLGIDKTL
CCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCHHHHHHEEEEEECCCCCCCCCHHH
AGGIVGAYSGSVYLSTILGAWFADRVWGAEKTLFLSGIVVMLGHIVLAAAPGLYGLLIGL
HCCCHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
IFIALGSGGVKSTASSMVGALYEQDEMRPLRDAGFSIFYIAINIGGFLGPLLTGLLQENI
HHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCEEEEEEEEHHHHHHHHHHHHHHHCC
GFHYGFGAAAVGMAFGLWRYSLGRKNLPHPTVPHPLSKGQGKTAAAVGIALIAALATAIK
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
TGLVNLDNFSGILLSTVILAVIVYFTRLLTNPRVSSDNKRHIIAYIPLFLTICMFWAVWF
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHH
QIYTVATVYFDETVNRTIGSFTVPVAWKDSMQSLWVILFSGLMAAMWTKMGRKQPKTPLK
HHHHHHHHHHHHHHHHHHCCEEECEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
FAMAVFVTGASFLGFVPFISAGTPMPIAVFALIVLAITIGELMISPIALSISTKIAPPLF
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
KTQMVALNFLAFSLGFTLGGVLFEKGYQAGDEIGFYRLLFYIGAATGFLLLLLVPKLNKM
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEGTD
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]