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The map label for this gene is omp85 [H]

Identifier: 161870881

GI number: 161870881

Start: 2021142

End: 2023535

Strand: Direct

Name: omp85 [H]

Synonym: NMCC_1970

Alternate gene names: 161870881

Gene position: 2021142-2023535 (Clockwise)

Preceding gene: 161870880

Following gene: 161870882

Centisome position: 93.86

GC content: 55.64

Gene sequence:

>2394_bases
ATGAAACTGAAACAGATTGCTTCCGCACTGATGGTCTTGGGCATATCGCCTTTGGCATTTGCCGACTTTACCATCCAAGA
CATCCGTATCGAAGGCTTGCAGCGTACCGAACCGAGTACCGTATTCAACTACCTGCCCGTAAAAATCGGCGATGCCTACA
ACGACGGCCGCGGTGGGGAAATCATCAAAAGCCTGTACGCGACCGGGTTCTTCGACGACGTACGCGTTGAATCCGCGGAC
GGACAGCTCCTGCTGACCGTCATCGAACGTCCCACCATCGGCTCGCTCAACATCACCGGCGCAAAAATGCTGCAAAACGA
CGCCATTAAGAAAAATCTCGAATCGTTCGGGCTGGCGCAGTCGCAATACTTTAATCAGGCGACACTCAATCAGGCAGTCG
CCGGCCTGAAAGAAGAATACCTCGGGCGCGGCAAACTCAATATCCAAATCACGCCCAAAGTAACCAAACTCGCCCGCAAC
CGCGTCGACATCGACATCACGATTGACGAGGGCAAATCCGCCAAAATCACCGACATCGAATTTGAAGGCAACCAAGTCTA
TTCCGACCGCAAACTGATGCGGCAGATGTCGCTGACCGAAGGCGGCATTTGGACATGGCTGACACGAAGCAACCAATTCA
ACGAGCAGAAATTTGCCCAAGACATGGAAAAAGTAACCGACTTCTACCAGAACAACGGCTACTTCGATTTCCGCATCCTC
GATACCGACATCCAAACCAACGAAGACAAAACCAAGCAGACCATCAAAATCACCGTCCACGAAGGCGAACGTTTCCGTTG
GGGCAAAGTCTCCATCGAAGGCGACACCAACGAAGTCCCCAAAGCCGAACTGGAAAAACTGCTGACCATGAAGCCCGGCA
AATGGTACGAACGCCAGCAGATGACCGCCGTTTTGGGTGAGATTCAGAACCGCATGGGCTCGGCAGGCTACGCATACAGC
GAAATCAGCGTACAGCCGCTGCCAAACGCCGAAACCAAAACCGTCGATTTCGTCCTGCACATCGAACCGGGCCGGAAAAT
CTACGTCAACGAAATCCACATCACCGGCAACAACAAAACCCGCGACGAAGTCGTGCGCCGCGAATTGCGCCAAATGGAAT
CCGCGCCTTACGACACCTCCAAGCTGCAACGCTCCAAAGAGCGCGTCGAGCTTTTGGGCTACTTCGACAACGTACAGTTT
GATGCCGTCCCGCTTGCCGGCACACCCGACAAAGTCGATTTGAACATGAGCCTGACCGAACGTTCCACCGGCTCGCTCGA
CTTGAGCGCGGGCTGGGTACAGGATACCGGCCTGGTCATGTCCGCAGGCGTTTCCCAAGACAACCTGTTCGGTACGGGCA
AGTCGGCCGCCCTGCGCGCCTCACGAAGCAAAACCACGCTCAACGGCTCGCTGTCGTTTACCGACCCGTACTTCACGGCA
GACGGGGTCAGCCTGGGCTACGATGTTTACGGAAAAGCCTTCGACCCGCGCAAAGCATCGACCAGCATCAAACAATATAA
AACCACCACGGCAGGCGCAGGCATCCGCATGAGCGTGCCTGTTACCGAATACGACCGCGTGAATTTCGGTTTGGTGGCAG
AACACCTGACCGTCAACACCTACAACAAAGCGCCCAAACACTATGCCGACTTTATCAAGAAATACGGCAAAACCGACGGC
ACAGACGGCAGCTTCAAAGGCTGGCTGTACAAAGGTACCGTCGGCTGGGGGCGCAACAAAACCGACAGCGCGTTATGGCC
GACGCGCGGCTACCTGACGGGCGTGAACGCCGAAATCGCCCTGCCCGGCAGCAAACTGCAATACTACTCCGCCACCCACA
ACCAAACCTGGTTCTTCCCCCTGAGCAAAACCTTCACACTGATGCTTGGCGGCGAAATCGGCTATGCCAACGGCTACGGC
AAAACCAAAGAAATCCCCTTCTTTGAAAACTTCTACGGCGGCGGCCTGGGTTCGGTACGAGGTTACGAAAGCGGCACGCT
CGGTCCGAAAGTGTATGACGAATACGGCGAAAAAATCAGCTACGGCGGCAACAAAAAAGCCAACGTCTCCGCCGAGCTGC
TCTTCCCGATGCCCGGCGCGAAAGACGCGCGCACCGTCCGCCTGAGCCTGTTTGCCGACGCAGGCAGCGTGTGGGACGGC
AAAACCTACGACGACAACAGCAGTTCCGCGACCGGCGGCAGGGTTCAAAACATTTACGGCGCCGGCAATACCCATAAATC
CACCTTTACCAACGAATTGCGCTATTCCGCCGGCGGCGCGGTTACCTGGCTCTCGCCTTTAGGCCCGATGAAATTCAGCT
ACGCCTACCCGCTGAAGAAAAAACCGGAAGACGAAATCCAACGCTTCCAATTCCAACTCGGCACGACGTTCTAA

Upstream 100 bases:

>100_bases
GATGGCAATCGCTTTTTTCAACGACATTACCCGCCTGCTTGGCTGAATTTCACGTTTCGTTATGCCGTCTGAAAGCATAA
CGCACCACAAGGAACTTATG

Downstream 100 bases:

>100_bases
TCCCGCAAATGCCGTCTGAAGCCCTTCAGACGGCATTTCGCGGCAACATTCGAAGGAGTTTTACCATGACCCGTTTGACC
CGCGCGTTTGCCGCGGCTCT

Product: outer membrane protein OMP85

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 797; Mature: 797

Protein sequence:

>797_residues
MKLKQIASALMVLGISPLAFADFTIQDIRIEGLQRTEPSTVFNYLPVKIGDAYNDGRGGEIIKSLYATGFFDDVRVESAD
GQLLLTVIERPTIGSLNITGAKMLQNDAIKKNLESFGLAQSQYFNQATLNQAVAGLKEEYLGRGKLNIQITPKVTKLARN
RVDIDITIDEGKSAKITDIEFEGNQVYSDRKLMRQMSLTEGGIWTWLTRSNQFNEQKFAQDMEKVTDFYQNNGYFDFRIL
DTDIQTNEDKTKQTIKITVHEGERFRWGKVSIEGDTNEVPKAELEKLLTMKPGKWYERQQMTAVLGEIQNRMGSAGYAYS
EISVQPLPNAETKTVDFVLHIEPGRKIYVNEIHITGNNKTRDEVVRRELRQMESAPYDTSKLQRSKERVELLGYFDNVQF
DAVPLAGTPDKVDLNMSLTERSTGSLDLSAGWVQDTGLVMSAGVSQDNLFGTGKSAALRASRSKTTLNGSLSFTDPYFTA
DGVSLGYDVYGKAFDPRKASTSIKQYKTTTAGAGIRMSVPVTEYDRVNFGLVAEHLTVNTYNKAPKHYADFIKKYGKTDG
TDGSFKGWLYKGTVGWGRNKTDSALWPTRGYLTGVNAEIALPGSKLQYYSATHNQTWFFPLSKTFTLMLGGEIGYANGYG
KTKEIPFFENFYGGGLGSVRGYESGTLGPKVYDEYGEKISYGGNKKANVSAELLFPMPGAKDARTVRLSLFADAGSVWDG
KTYDDNSSSATGGRVQNIYGAGNTHKSTFTNELRYSAGGAVTWLSPLGPMKFSYAYPLKKKPEDEIQRFQFQLGTTF

Sequences:

>Translated_797_residues
MKLKQIASALMVLGISPLAFADFTIQDIRIEGLQRTEPSTVFNYLPVKIGDAYNDGRGGEIIKSLYATGFFDDVRVESAD
GQLLLTVIERPTIGSLNITGAKMLQNDAIKKNLESFGLAQSQYFNQATLNQAVAGLKEEYLGRGKLNIQITPKVTKLARN
RVDIDITIDEGKSAKITDIEFEGNQVYSDRKLMRQMSLTEGGIWTWLTRSNQFNEQKFAQDMEKVTDFYQNNGYFDFRIL
DTDIQTNEDKTKQTIKITVHEGERFRWGKVSIEGDTNEVPKAELEKLLTMKPGKWYERQQMTAVLGEIQNRMGSAGYAYS
EISVQPLPNAETKTVDFVLHIEPGRKIYVNEIHITGNNKTRDEVVRRELRQMESAPYDTSKLQRSKERVELLGYFDNVQF
DAVPLAGTPDKVDLNMSLTERSTGSLDLSAGWVQDTGLVMSAGVSQDNLFGTGKSAALRASRSKTTLNGSLSFTDPYFTA
DGVSLGYDVYGKAFDPRKASTSIKQYKTTTAGAGIRMSVPVTEYDRVNFGLVAEHLTVNTYNKAPKHYADFIKKYGKTDG
TDGSFKGWLYKGTVGWGRNKTDSALWPTRGYLTGVNAEIALPGSKLQYYSATHNQTWFFPLSKTFTLMLGGEIGYANGYG
KTKEIPFFENFYGGGLGSVRGYESGTLGPKVYDEYGEKISYGGNKKANVSAELLFPMPGAKDARTVRLSLFADAGSVWDG
KTYDDNSSSATGGRVQNIYGAGNTHKSTFTNELRYSAGGAVTWLSPLGPMKFSYAYPLKKKPEDEIQRFQFQLGTTF
>Mature_797_residues
MKLKQIASALMVLGISPLAFADFTIQDIRIEGLQRTEPSTVFNYLPVKIGDAYNDGRGGEIIKSLYATGFFDDVRVESAD
GQLLLTVIERPTIGSLNITGAKMLQNDAIKKNLESFGLAQSQYFNQATLNQAVAGLKEEYLGRGKLNIQITPKVTKLARN
RVDIDITIDEGKSAKITDIEFEGNQVYSDRKLMRQMSLTEGGIWTWLTRSNQFNEQKFAQDMEKVTDFYQNNGYFDFRIL
DTDIQTNEDKTKQTIKITVHEGERFRWGKVSIEGDTNEVPKAELEKLLTMKPGKWYERQQMTAVLGEIQNRMGSAGYAYS
EISVQPLPNAETKTVDFVLHIEPGRKIYVNEIHITGNNKTRDEVVRRELRQMESAPYDTSKLQRSKERVELLGYFDNVQF
DAVPLAGTPDKVDLNMSLTERSTGSLDLSAGWVQDTGLVMSAGVSQDNLFGTGKSAALRASRSKTTLNGSLSFTDPYFTA
DGVSLGYDVYGKAFDPRKASTSIKQYKTTTAGAGIRMSVPVTEYDRVNFGLVAEHLTVNTYNKAPKHYADFIKKYGKTDG
TDGSFKGWLYKGTVGWGRNKTDSALWPTRGYLTGVNAEIALPGSKLQYYSATHNQTWFFPLSKTFTLMLGGEIGYANGYG
KTKEIPFFENFYGGGLGSVRGYESGTLGPKVYDEYGEKISYGGNKKANVSAELLFPMPGAKDARTVRLSLFADAGSVWDG
KTYDDNSSSATGGRVQNIYGAGNTHKSTFTNELRYSAGGAVTWLSPLGPMKFSYAYPLKKKPEDEIQRFQFQLGTTF

Specific function: Unknown

COG id: COG4775

COG function: function code M; Outer membrane protein/protective antigen OMA87

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen D15 family [H]

Homologues:

Organism=Escherichia coli, GI1786374, Length=830, Percent_Identity=32.8915662650602, Blast_Score=437, Evalue=1e-124,

Paralogues:

None

Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR016474
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 88592; Mature: 88592

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKQIASALMVLGISPLAFADFTIQDIRIEGLQRTEPSTVFNYLPVKIGDAYNDGRGGE
CCHHHHHHHHHHHCCCCHHEECCEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCCHH
IIKSLYATGFFDDVRVESADGQLLLTVIERPTIGSLNITGAKMLQNDAIKKNLESFGLAQ
HHHHHHHCCCCCCEEEECCCCCEEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHHCCHH
SQYFNQATLNQAVAGLKEEYLGRGKLNIQITPKVTKLARNRVDIDITIDEGKSAKITDIE
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEECCCCCCEEEEEE
FEGNQVYSDRKLMRQMSLTEGGIWTWLTRSNQFNEQKFAQDMEKVTDFYQNNGYFDFRIL
ECCCEEEHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEE
DTDIQTNEDKTKQTIKITVHEGERFRWGKVSIEGDTNEVPKAELEKLLTMKPGKWYERQQ
ECCCCCCCCCCCEEEEEEEECCCEEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCHHHHH
MTAVLGEIQNRMGSAGYAYSEISVQPLPNAETKTVDFVLHIEPGRKIYVNEIHITGNNKT
HHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEEEEEEECCCCEEEEEEEEEECCCCC
RDEVVRRELRQMESAPYDTSKLQRSKERVELLGYFDNVQFDAVPLAGTPDKVDLNMSLTE
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEEC
RSTGSLDLSAGWVQDTGLVMSAGVSQDNLFGTGKSAALRASRSKTTLNGSLSFTDPYFTA
CCCCCEEECCCEEECCCEEEECCCCCCCCCCCCCHHHEECCCCCEEECCEEEECCCCEEC
DGVSLGYDVYGKAFDPRKASTSIKQYKTTTAGAGIRMSVPVTEYDRVNFGLVAEHLTVNT
CCCEECCEECCCCCCCCHHHCHHHHHEEECCCCCEEEECCCCCCCCCCCEEEEEEEEEEC
YNKAPKHYADFIKKYGKTDGTDGSFKGWLYKGTVGWGRNKTDSALWPTRGYLTGVNAEIA
CCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCCEEEE
LPGSKLQYYSATHNQTWFFPLSKTFTLMLGGEIGYANGYGKTKEIPFFENFYGGGLGSVR
CCCCCEEEEECCCCEEEEEECCCEEEEEECCEEECCCCCCCCCCCCCHHHHCCCCCCCCC
GYESGTLGPKVYDEYGEKISYGGNKKANVSAELLFPMPGAKDARTVRLSLFADAGSVWDG
CCCCCCCCCHHHHHHCCEEECCCCCCCCEEEEEEEECCCCCCCEEEEEEEEECCCCCCCC
KTYDDNSSSATGGRVQNIYGAGNTHKSTFTNELRYSAGGAVTWLSPLGPMKFSYAYPLKK
CCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHEECCCCEEEEECCCCCCCEEEECCCCC
KPEDEIQRFQFQLGTTF
CCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKLKQIASALMVLGISPLAFADFTIQDIRIEGLQRTEPSTVFNYLPVKIGDAYNDGRGGE
CCHHHHHHHHHHHCCCCHHEECCEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCCHH
IIKSLYATGFFDDVRVESADGQLLLTVIERPTIGSLNITGAKMLQNDAIKKNLESFGLAQ
HHHHHHHCCCCCCEEEECCCCCEEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHHCCHH
SQYFNQATLNQAVAGLKEEYLGRGKLNIQITPKVTKLARNRVDIDITIDEGKSAKITDIE
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEECCCCCCEEEEEE
FEGNQVYSDRKLMRQMSLTEGGIWTWLTRSNQFNEQKFAQDMEKVTDFYQNNGYFDFRIL
ECCCEEEHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEE
DTDIQTNEDKTKQTIKITVHEGERFRWGKVSIEGDTNEVPKAELEKLLTMKPGKWYERQQ
ECCCCCCCCCCCEEEEEEEECCCEEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCHHHHH
MTAVLGEIQNRMGSAGYAYSEISVQPLPNAETKTVDFVLHIEPGRKIYVNEIHITGNNKT
HHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEEEEEEECCCCEEEEEEEEEECCCCC
RDEVVRRELRQMESAPYDTSKLQRSKERVELLGYFDNVQFDAVPLAGTPDKVDLNMSLTE
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEEC
RSTGSLDLSAGWVQDTGLVMSAGVSQDNLFGTGKSAALRASRSKTTLNGSLSFTDPYFTA
CCCCCEEECCCEEECCCEEEECCCCCCCCCCCCCHHHEECCCCCEEECCEEEECCCCEEC
DGVSLGYDVYGKAFDPRKASTSIKQYKTTTAGAGIRMSVPVTEYDRVNFGLVAEHLTVNT
CCCEECCEECCCCCCCCHHHCHHHHHEEECCCCCEEEECCCCCCCCCCCEEEEEEEEEEC
YNKAPKHYADFIKKYGKTDGTDGSFKGWLYKGTVGWGRNKTDSALWPTRGYLTGVNAEIA
CCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCCEEEE
LPGSKLQYYSATHNQTWFFPLSKTFTLMLGGEIGYANGYGKTKEIPFFENFYGGGLGSVR
CCCCCEEEEECCCCEEEEEECCCEEEEEECCEEECCCCCCCCCCCCCHHHHCCCCCCCCC
GYESGTLGPKVYDEYGEKISYGGNKKANVSAELLFPMPGAKDARTVRLSLFADAGSVWDG
CCCCCCCCCHHHHHHCCEEECCCCCCCCEEEEEEEECCCCCCCEEEEEEEEECCCCCCCC
KTYDDNSSSATGGRVQNIYGAGNTHKSTFTNELRYSAGGAVTWLSPLGPMKFSYAYPLKK
CCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHEECCCCEEEEECCCCCCCEEEECCCCC
KPEDEIQRFQFQLGTTF
CCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10710307 [H]