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The map label for this gene is rnb [H]

Identifier: 161870781

GI number: 161870781

Start: 1909098

End: 1910978

Strand: Direct

Name: rnb [H]

Synonym: NMCC_1863

Alternate gene names: 161870781

Gene position: 1909098-1910978 (Clockwise)

Preceding gene: 161870777

Following gene: 161870784

Centisome position: 88.65

GC content: 55.93

Gene sequence:

>1881_bases
ATGAATATTTTTTACGAAGAGTCCGGCCAATTCAAAATCGCCGCCATCATCCAAAAAAACGATGCCACCTACCAAGTCGA
TACCCCACACGGCAAACGCACCAAAGTGAAGGCGAACAACGTCTTTGCCGAGTTTGACGGCGATATGGCGGCGTTTTTGG
AAAACGCGCAGGCACAGGCGGCGGACATCGACACCGATTTATTGTGGGAAGTATGCGGCGAAGAGGAATTTACCGCTGAA
GCCATAGCCGAAGAATATTACGGCCATGCGCCGACCAAAACCGAGCTGGCGGCGACCTTGATTGCGCTGTACGCCGCGCC
GATGTATTTCTACAAAAAAGCCAAAGGCGTGTTCAAAGCCGCGCCCGAAGAAACTTTGAAACAGGCACTTGCCGCCATCG
AACGCAAAAAACAGCAAGACGCGCAAATCGACGCTTGGGCGGAAGCCTTGAAACGCGGCGAGATGCCGTCTGAAATCGCG
GCGGATCTGAAAACCATCCTGCACGCGCCCGACAAGCAGTCGCTGACCTACAAAGCCTTTACCAAAGCCGCCGACGCGCT
GAAAACCTCTGCCTACGAATTGGCGAAAAAAACGGGCGGCATTACGTCCATTCCCCAATACCTGCAAGACGGGTTTGAAA
TCAAATACTTCCCCAAAGGAACAGGCTTCCCCGACCTTCCGCTTCCCGAAATGCCCGACCTGCCCAAGGCTGACGTTACC
GCCTTTTCCATTGACGACGAATCGACCACCGAAGTGGACGACGCTTTAAGCCTGACCGACTTGGACAACGGCACGAAGCG
CGTCGGCATCCACATCGCCGCGCCGTCGCTTGCCATTAAACAAGGCGACAAAATGGAAAAAAACATCATGGAACGCTTGA
GCACGGTTTATTTCCCCGGCGGCAAAATCACGATGCTGCCCGAAAACTGGATTGCCGCGTTCAGCCTTGATGCAGGTGCA
TACCGCCCTTCCATCAGCATTTATTTCGATGTGGACAGCGAGTTCAACGTCGGCGCGCCGACCTGCAAAATCGAAGCGGT
CAACATCGCCGAAAACCTGCGTATCCAAGCCATCGAACCGCATTTCAACGCCGAAGCGGGCTTGGACGAAGCGGGCGAAA
TGATGTTCGCCCACCATCAAGACCTGATTTGGTTCTATCAATTCGCCACCGCCCTGCAAAAAGCGCGCGGCAAATACGAG
CCCGACCGTGCGCCGCAATACGATTACAGCATCGAATTGGATGAGGAAGGCAACGTATCCGTCGTCCGCCGCGAACGCGG
TTCGCCCATCGATACGCTGGTCAGCGAGATGATGATTCTTGCCAACAGCACTTGGGCGCAAATGCTGGACGAAAACGAGC
TGCCCGGCCTTTTCCGCGTCCAACCGGCAGGCAAAGTGCGCATGAGCACCAAATCCGAGCCGCACATCGGCATGGGCGTG
CAGCATTACGGCTGGTTCACTTCGCCGCTGCGCCGCGCCGCCGACTACATCAACCAAAAGCAGCTGATCAGCCTGATAGA
CGACTCTGCCGAGCCGCTGTATCAAAACAGCGATGCCGAGCTTTTCGCCGCGCTGCGCGACTTTGATGCCGCCTATACCG
CCTACGCCGACTTCCAACGCCAAATGGAAGCCTACTGGAGCCTCGTCTATCTGCAACAGCAAGGCACGAGCGAGCTGACG
GCCACCATCCTCAAAGAAGACCTCGTCCGCATTGAAGGCCTGCCGCTGGTAACGCGCGCGACCGGTATTCCGTTTGACGC
GCTGCCCAAATCACAGGCATTGTTCAAAATCACCGAATTGGATGCCGAGAAGCAGTTTGTCTCGCTCAACTACATCAAGG
CAGTCGCACCCGCGGGTACAACGGCAGGCAATGCCGTCTGA

Upstream 100 bases:

>100_bases
CCGCAAAGACGCGCCAACCCTCTCCCAACCTTTTTTCAGACGGCATTTTCGGTAATCTGCTAAAATCGCCCGCTTGAGTT
TCCACAGAAAAATCCGAAAA

Downstream 100 bases:

>100_bases
AGCCCGATACGGCAAACTCCGGCAAAAACAGAAACCTGAATCTCATCATTCCCACAGTCGGGAATCCGGTTTTTTGGGTT
TCCGTTGTTTTTCCGTTTCA

Product: ribonuclease II-related protein

Products: NA

Alternate protein names: Exoribonuclease II; RNase II; Ribonuclease II [H]

Number of amino acids: Translated: 626; Mature: 626

Protein sequence:

>626_residues
MNIFYEESGQFKIAAIIQKNDATYQVDTPHGKRTKVKANNVFAEFDGDMAAFLENAQAQAADIDTDLLWEVCGEEEFTAE
AIAEEYYGHAPTKTELAATLIALYAAPMYFYKKAKGVFKAAPEETLKQALAAIERKKQQDAQIDAWAEALKRGEMPSEIA
ADLKTILHAPDKQSLTYKAFTKAADALKTSAYELAKKTGGITSIPQYLQDGFEIKYFPKGTGFPDLPLPEMPDLPKADVT
AFSIDDESTTEVDDALSLTDLDNGTKRVGIHIAAPSLAIKQGDKMEKNIMERLSTVYFPGGKITMLPENWIAAFSLDAGA
YRPSISIYFDVDSEFNVGAPTCKIEAVNIAENLRIQAIEPHFNAEAGLDEAGEMMFAHHQDLIWFYQFATALQKARGKYE
PDRAPQYDYSIELDEEGNVSVVRRERGSPIDTLVSEMMILANSTWAQMLDENELPGLFRVQPAGKVRMSTKSEPHIGMGV
QHYGWFTSPLRRAADYINQKQLISLIDDSAEPLYQNSDAELFAALRDFDAAYTAYADFQRQMEAYWSLVYLQQQGTSELT
ATILKEDLVRIEGLPLVTRATGIPFDALPKSQALFKITELDAEKQFVSLNYIKAVAPAGTTAGNAV

Sequences:

>Translated_626_residues
MNIFYEESGQFKIAAIIQKNDATYQVDTPHGKRTKVKANNVFAEFDGDMAAFLENAQAQAADIDTDLLWEVCGEEEFTAE
AIAEEYYGHAPTKTELAATLIALYAAPMYFYKKAKGVFKAAPEETLKQALAAIERKKQQDAQIDAWAEALKRGEMPSEIA
ADLKTILHAPDKQSLTYKAFTKAADALKTSAYELAKKTGGITSIPQYLQDGFEIKYFPKGTGFPDLPLPEMPDLPKADVT
AFSIDDESTTEVDDALSLTDLDNGTKRVGIHIAAPSLAIKQGDKMEKNIMERLSTVYFPGGKITMLPENWIAAFSLDAGA
YRPSISIYFDVDSEFNVGAPTCKIEAVNIAENLRIQAIEPHFNAEAGLDEAGEMMFAHHQDLIWFYQFATALQKARGKYE
PDRAPQYDYSIELDEEGNVSVVRRERGSPIDTLVSEMMILANSTWAQMLDENELPGLFRVQPAGKVRMSTKSEPHIGMGV
QHYGWFTSPLRRAADYINQKQLISLIDDSAEPLYQNSDAELFAALRDFDAAYTAYADFQRQMEAYWSLVYLQQQGTSELT
ATILKEDLVRIEGLPLVTRATGIPFDALPKSQALFKITELDAEKQFVSLNYIKAVAPAGTTAGNAV
>Mature_626_residues
MNIFYEESGQFKIAAIIQKNDATYQVDTPHGKRTKVKANNVFAEFDGDMAAFLENAQAQAADIDTDLLWEVCGEEEFTAE
AIAEEYYGHAPTKTELAATLIALYAAPMYFYKKAKGVFKAAPEETLKQALAAIERKKQQDAQIDAWAEALKRGEMPSEIA
ADLKTILHAPDKQSLTYKAFTKAADALKTSAYELAKKTGGITSIPQYLQDGFEIKYFPKGTGFPDLPLPEMPDLPKADVT
AFSIDDESTTEVDDALSLTDLDNGTKRVGIHIAAPSLAIKQGDKMEKNIMERLSTVYFPGGKITMLPENWIAAFSLDAGA
YRPSISIYFDVDSEFNVGAPTCKIEAVNIAENLRIQAIEPHFNAEAGLDEAGEMMFAHHQDLIWFYQFATALQKARGKYE
PDRAPQYDYSIELDEEGNVSVVRRERGSPIDTLVSEMMILANSTWAQMLDENELPGLFRVQPAGKVRMSTKSEPHIGMGV
QHYGWFTSPLRRAADYINQKQLISLIDDSAEPLYQNSDAELFAALRDFDAAYTAYADFQRQMEAYWSLVYLQQQGTSELT
ATILKEDLVRIEGLPLVTRATGIPFDALPKSQALFKITELDAEKQFVSLNYIKAVAPAGTTAGNAV

Specific function: Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction [H]

COG id: COG0557

COG function: function code K; Exoribonuclease R

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011129
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR022967
- InterPro:   IPR013223
- InterPro:   IPR001900
- InterPro:   IPR022966
- InterPro:   IPR004476
- InterPro:   IPR011804 [H]

Pfam domain/function: PF08206 OB_RNB; PF00773 RNB; PF00575 S1 [H]

EC number: =3.1.13.1 [H]

Molecular weight: Translated: 69416; Mature: 69416

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIFYEESGQFKIAAIIQKNDATYQVDTPHGKRTKVKANNVFAEFDGDMAAFLENAQAQA
CCEEEECCCCEEEEEEEECCCCEEEEECCCCCCEEEEECCEEEECCCHHHHHHHCCCHHH
ADIDTDLLWEVCGEEEFTAEAIAEEYYGHAPTKTELAATLIALYAAPMYFYKKAKGVFKA
HCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHC
APEETLKQALAAIERKKQQDAQIDAWAEALKRGEMPSEIAADLKTILHAPDKQSLTYKAF
CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHH
TKAADALKTSAYELAKKTGGITSIPQYLQDGFEIKYFPKGTGFPDLPLPEMPDLPKADVT
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCEE
AFSIDDESTTEVDDALSLTDLDNGTKRVGIHIAAPSLAIKQGDKMEKNIMERLSTVYFPG
EEEECCCCCCCHHHCEEEEECCCCCEEEEEEEECCCCEECCCCHHHHHHHHHHHHEECCC
GKITMLPENWIAAFSLDAGAYRPSISIYFDVDSEFNVGAPTCKIEAVNIAENLRIQAIEP
CEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEHHCCCEEEEECC
HFNAEAGLDEAGEMMFAHHQDLIWFYQFATALQKARGKYEPDRAPQYDYSIELDEEGNVS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEE
VVRRERGSPIDTLVSEMMILANSTWAQMLDENELPGLFRVQPAGKVRMSTKSEPHIGMGV
EEEECCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEECCCCCEEECCCCCCCCCCCC
QHYGWFTSPLRRAADYINQKQLISLIDDSAEPLYQNSDAELFAALRDFDAAYTAYADFQR
HHCCCHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
QMEAYWSLVYLQQQGTSELTATILKEDLVRIEGLPLVTRATGIPFDALPKSQALFKITEL
HHHHHHHEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEECC
DAEKQFVSLNYIKAVAPAGTTAGNAV
CCCHHEEEHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MNIFYEESGQFKIAAIIQKNDATYQVDTPHGKRTKVKANNVFAEFDGDMAAFLENAQAQA
CCEEEECCCCEEEEEEEECCCCEEEEECCCCCCEEEEECCEEEECCCHHHHHHHCCCHHH
ADIDTDLLWEVCGEEEFTAEAIAEEYYGHAPTKTELAATLIALYAAPMYFYKKAKGVFKA
HCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHC
APEETLKQALAAIERKKQQDAQIDAWAEALKRGEMPSEIAADLKTILHAPDKQSLTYKAF
CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHH
TKAADALKTSAYELAKKTGGITSIPQYLQDGFEIKYFPKGTGFPDLPLPEMPDLPKADVT
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCEE
AFSIDDESTTEVDDALSLTDLDNGTKRVGIHIAAPSLAIKQGDKMEKNIMERLSTVYFPG
EEEECCCCCCCHHHCEEEEECCCCCEEEEEEEECCCCEECCCCHHHHHHHHHHHHEECCC
GKITMLPENWIAAFSLDAGAYRPSISIYFDVDSEFNVGAPTCKIEAVNIAENLRIQAIEP
CEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEHHCCCEEEEECC
HFNAEAGLDEAGEMMFAHHQDLIWFYQFATALQKARGKYEPDRAPQYDYSIELDEEGNVS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEE
VVRRERGSPIDTLVSEMMILANSTWAQMLDENELPGLFRVQPAGKVRMSTKSEPHIGMGV
EEEECCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEECCCCCEEECCCCCCCCCCCC
QHYGWFTSPLRRAADYINQKQLISLIDDSAEPLYQNSDAELFAALRDFDAAYTAYADFQR
HHCCCHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
QMEAYWSLVYLQQQGTSELTATILKEDLVRIEGLPLVTRATGIPFDALPKSQALFKITEL
HHHHHHHEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEECC
DAEKQFVSLNYIKAVAPAGTTAGNAV
CCCHHEEEHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA