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The map label for this gene is ypjD [C]

Identifier: 161870768

GI number: 161870768

Start: 1891364

End: 1892170

Strand: Reverse

Name: ypjD [C]

Synonym: NMCC_1849

Alternate gene names: 161870768

Gene position: 1892170-1891364 (Counterclockwise)

Preceding gene: 161870770

Following gene: 161870763

Centisome position: 87.87

GC content: 51.05

Gene sequence:

>807_bases
ATGCCGACAGTTTTCATCTTTTTGACGGCGGTTTACGCAGGATTGGGTGCATTTGCATGGCACTGCCAACAGCAGGGGCT
CGGCCGGGATTACCCGTGGAAGACGGAATTGCCGGTTTTGGGCGCGGCATTGACCGTCCATGGCGCGGCACTGCTTATGC
CGGTCATTCAAGACAAAATCATCATTATGGGCTTTGGGTATTCCGGCAGCCTGATTGTTTGGATGATGCTGTTTATTTAT
TTTGCCGGCAGCTTCTTTTATTCGCTGCGCGGAGTGCAGTTGCTGCTGTATCCTTGCGCCGCACTGATGCTGCTGTCAGG
TTTGGTTTTTCCTGGAAAATTCTCGGGATATGAAATTACCGACCTTCCCTTTATGCTGCATATCGGAACTTCGCTGCTCG
CATACGGGCTGTTCGGCATCGCAACATTATTGTCCGTTTTGACCCTGCTGCTGAATCGGAGCCTGCACCGCAGGAACTTC
TCCAAGCTCGCAGGATTCCTGCCGTCGCTGCTCAGTTTGGAAAAACTCATGTTCCAAGCCATGTGGGCAGGTTTCATCCT
GCTGACCTATTCCGTCGTCAGCGGAACATTTTTTGCCGAAGCCGTATTCGGCAAACCCATGACCTTTACCCATAAAACCG
TATTCGGCATATTGTCATGGCTGATTTACGGCGGACTGCTGCTCAAGCACAGCATGACCGCATGGCGCGGCAAAAAAGCC
GCCGTGTGGACCATCATCGGATTTGTCAGCCTTATGATTGCCTATATGGGCAGCAAGTTCGTATTGGAAATCATTCTGAA
AAGATAA

Upstream 100 bases:

>100_bases
CTTGCCCGAAACGGGGATTTTACAATTCCAACGTTAAAAGTTCCAATATTTCATAAGCGGCCGCATACAGCGCAACAGTA
TAGATTAGAGAAAGTCCACC

Downstream 100 bases:

>100_bases
GAAGAGCCAACAGATGCCGTCCGAAGCCCCGAGTTTCAGACAGCATATTCACAAAGGCGCACCAGTCAGAGGAGGGAGAG
GAAGGGATTGTTGGAGGCGG

Product: CcsA-related protein

Products: NA

Alternate protein names: ORF5 [H]

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MPTVFIFLTAVYAGLGAFAWHCQQQGLGRDYPWKTELPVLGAALTVHGAALLMPVIQDKIIIMGFGYSGSLIVWMMLFIY
FAGSFFYSLRGVQLLLYPCAALMLLSGLVFPGKFSGYEITDLPFMLHIGTSLLAYGLFGIATLLSVLTLLLNRSLHRRNF
SKLAGFLPSLLSLEKLMFQAMWAGFILLTYSVVSGTFFAEAVFGKPMTFTHKTVFGILSWLIYGGLLLKHSMTAWRGKKA
AVWTIIGFVSLMIAYMGSKFVLEIILKR

Sequences:

>Translated_268_residues
MPTVFIFLTAVYAGLGAFAWHCQQQGLGRDYPWKTELPVLGAALTVHGAALLMPVIQDKIIIMGFGYSGSLIVWMMLFIY
FAGSFFYSLRGVQLLLYPCAALMLLSGLVFPGKFSGYEITDLPFMLHIGTSLLAYGLFGIATLLSVLTLLLNRSLHRRNF
SKLAGFLPSLLSLEKLMFQAMWAGFILLTYSVVSGTFFAEAVFGKPMTFTHKTVFGILSWLIYGGLLLKHSMTAWRGKKA
AVWTIIGFVSLMIAYMGSKFVLEIILKR
>Mature_267_residues
PTVFIFLTAVYAGLGAFAWHCQQQGLGRDYPWKTELPVLGAALTVHGAALLMPVIQDKIIIMGFGYSGSLIVWMMLFIYF
AGSFFYSLRGVQLLLYPCAALMLLSGLVFPGKFSGYEITDLPFMLHIGTSLLAYGLFGIATLLSVLTLLLNRSLHRRNFS
KLAGFLPSLLSLEKLMFQAMWAGFILLTYSVVSGTFFAEAVFGKPMTFTHKTVFGILSWLIYGGLLLKHSMTAWRGKKAA
VWTIIGFVSLMIAYMGSKFVLEIILKR

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Integral membrane protein (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693174, Length=171, Percent_Identity=28.0701754385965, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 29746; Mature: 29615

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHCCHHHHHHHHCC
>Mature Secondary Structure 
PTVFIFLTAVYAGLGAFAWHCQQQGLGRDYPWKTELPVLGAALTVHGAALLMPVIQDKI
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCE
IIMGFGYSGSLIVWMMLFIYFAGSFFYSLRGVQLLLYPCAALMLLSGLVFPGKFSGYEIT
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEC
DLPFMLHIGTSLLAYGLFGIATLLSVLTLLLNRSLHRRNFSKLAGFLPSLLSLEKLMFQA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHHHHHHHHH
MWAGFILLTYSVVSGTFFAEAVFGKPMTFTHKTVFGILSWLIYGGLLLKHSMTAWRGKKA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
AVWTIIGFVSLMIAYMGSKFVLEIILKR
HHHHHHHHHHHHHHHHCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7553451 [H]