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The map label for this gene is lptF [H]

Identifier: 161870424

GI number: 161870424

Start: 1499320

End: 1500618

Strand: Direct

Name: lptF [H]

Synonym: NMCC_1472

Alternate gene names: 161870424

Gene position: 1499320-1500618 (Clockwise)

Preceding gene: 161870407

Following gene: 161870426

Centisome position: 69.63

GC content: 54.12

Gene sequence:

>1299_bases
GTGCTAAATTCCACGTTTATTCTCCTGATTGAGACGGTTGTCGGTAGTTTTCGGACGGCCTTTCGCTCAAAAGACCGTCT
GAAGACGGCTGGCACGATTGTACCCCATTTGAAGCACCGTCTGAAACCTTGCGCGGACAATCCGCCTGCGCCGAACCGCT
TACCGCCCCCTGACCGCGATTCTATGATTTATCAAAGAAACCTCATCAAAGAACTCTCTTTTACCGCCGTCGGCATTTTC
GTCGTCCTCTTGGCGGTATTGGTCTCCACGCAGGCAATCAACCTGCTCGGCCGTGCCGCCGACGGGCGTGTCGCCATCGA
TGCCGTGTTGGCATTGGTCGGCTTCTGGGTCATCGGTATGACGCCGCTTTTGCTGGTGTTGACCGCATTTATCAGTACAT
TGACCGTGTTGACCCGCTACTGGCGCGACAGCGAAATGTCGGTCTGGCTATCCTGCGGATTGGCATTGAAACAATGGATA
CGCCCGGTGATGCAGTTTGCCGTGCCGTTTGCCGTTTTGGTTGCCGTCATGCAGCTTTGGGTGATACCGTGGGCAGAGCT
ACGCAGCCGCGAATACGCTGAAATCCTGAAGCAGAAGCAGGAATTGTCTTTGGTGGAGGCAGGCGGGTTCAACAGTTTGG
GCAAGCGCAACGGCAGGGTTTATTTTGTCGAAACCTTCGATACCGAATCCGGCATCATGAAAAACCTGTTCCTGCGCGAA
CAGGACAAAAACGGCGGCGACAACATCATCTTCGCCAAAGAAGGTAACTTCTCGCTGAACGACAACAAACGCACGCTCGA
ATTGCGCCACGGCTACCGTTACAGCGGCACGCCTGGACGCGCCGACTACAATCAGGTTTCCTTCCAAAAACTCAACCTGA
TTATCAGCACCACGCCAAAACTCATCGACCCCGTTTCCCACCGCCGTACCATTCCGACCGCCCAACTGATTGGCAGCAGC
AACCCGCAACATCAGGCGGAATTGATGTGGCGCATCTCGCTGACCGTCAGCGTCCTCCTACTCTGCCTGCTTGCCGTGCC
GCTTTCCTATTTCAACCCGCGCAGCGGACATACCTACAATATCTTGATTGCCATCGGTTTGTTTTTAATTTACCAAAACG
GGCTGACCCTGCTTTTTGAAGCCGTGGAAGACGGCAAAATCCATTTTTGGCTCGGACTGCTGCCTATGCACATCATCATG
TTCGTCATCGCAATCGTACTTCTGCGCGTCCGCAGCATGCCCAGCCAGCCCTTCTGGCAGGCGGTTGGCAAAAGTCTGAC
ATTGAAAGGCGGAAAATGA

Upstream 100 bases:

>100_bases
AGACAAAAGGGCAAGGGCGGTCGGATGGTTTAATTGCGCCTCTTCGGTGCAGACAAATAACTGTGCGCCTGCCTGCTGTT
CCTGCAAGATTTCGGTTTTT

Downstream 100 bases:

>100_bases
ACCTGATTTCACGTTACATCATCCGTCAAATGGCGGTTATGGCGGTTTACGCGCTCCTTGCCTTCCTCGCTTTGTACAGC
TTTTTTGAAATCCTGTACGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 432; Mature: 432

Protein sequence:

>432_residues
MLNSTFILLIETVVGSFRTAFRSKDRLKTAGTIVPHLKHRLKPCADNPPAPNRLPPPDRDSMIYQRNLIKELSFTAVGIF
VVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTPLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWI
RPVMQFAVPFAVLVAVMQLWVIPWAELRSREYAEILKQKQELSLVEAGGFNSLGKRNGRVYFVETFDTESGIMKNLFLRE
QDKNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPKLIDPVSHRRTIPTAQLIGSS
NPQHQAELMWRISLTVSVLLLCLLAVPLSYFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIM
FVIAIVLLRVRSMPSQPFWQAVGKSLTLKGGK

Sequences:

>Translated_432_residues
MLNSTFILLIETVVGSFRTAFRSKDRLKTAGTIVPHLKHRLKPCADNPPAPNRLPPPDRDSMIYQRNLIKELSFTAVGIF
VVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTPLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWI
RPVMQFAVPFAVLVAVMQLWVIPWAELRSREYAEILKQKQELSLVEAGGFNSLGKRNGRVYFVETFDTESGIMKNLFLRE
QDKNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPKLIDPVSHRRTIPTAQLIGSS
NPQHQAELMWRISLTVSVLLLCLLAVPLSYFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIM
FVIAIVLLRVRSMPSQPFWQAVGKSLTLKGGK
>Mature_432_residues
MLNSTFILLIETVVGSFRTAFRSKDRLKTAGTIVPHLKHRLKPCADNPPAPNRLPPPDRDSMIYQRNLIKELSFTAVGIF
VVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTPLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWI
RPVMQFAVPFAVLVAVMQLWVIPWAELRSREYAEILKQKQELSLVEAGGFNSLGKRNGRVYFVETFDTESGIMKNLFLRE
QDKNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPKLIDPVSHRRTIPTAQLIGSS
NPQHQAELMWRISLTVSVLLLCLLAVPLSYFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIM
FVIAIVLLRVRSMPSQPFWQAVGKSLTLKGGK

Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptF/lptG family [H]

Homologues:

Organism=Escherichia coli, GI1790712, Length=349, Percent_Identity=28.6532951289398, Blast_Score=110, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005495 [H]

Pfam domain/function: PF03739 YjgP_YjgQ [H]

EC number: NA

Molecular weight: Translated: 48516; Mature: 48516

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNSTFILLIETVVGSFRTAFRSKDRLKTAGTIVPHLKHRLKPCADNPPAPNRLPPPDRD
CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
SMIYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
TPLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLW
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIPWAELRSREYAEILKQKQELSLVEAGGFNSLGKRNGRVYFVETFDTESGIMKNLFLRE
HCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHC
QDKNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPK
CCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEECCCCCCCCCCHHHHHHHHEEEECCCH
LIDPVSHRRTIPTAQLIGSSNPQHQAELMWRISLTVSVLLLCLLAVPLSYFNPRSGHTYN
HHCCHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
ILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLLRVRSMPSQPFWQ
HHHHHHHHHHHHCCHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
AVGKSLTLKGGK
HCCCEEECCCCC
>Mature Secondary Structure
MLNSTFILLIETVVGSFRTAFRSKDRLKTAGTIVPHLKHRLKPCADNPPAPNRLPPPDRD
CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
SMIYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
TPLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLW
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIPWAELRSREYAEILKQKQELSLVEAGGFNSLGKRNGRVYFVETFDTESGIMKNLFLRE
HCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHC
QDKNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPK
CCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEECCCCCCCCCCHHHHHHHHEEEECCCH
LIDPVSHRRTIPTAQLIGSSNPQHQAELMWRISLTVSVLLLCLLAVPLSYFNPRSGHTYN
HHCCHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
ILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLLRVRSMPSQPFWQ
HHHHHHHHHHHHCCHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
AVGKSLTLKGGK
HCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]