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The map label for this gene is yafM [H]

Identifier: 161870333

GI number: 161870333

Start: 1395998

End: 1396555

Strand: Reverse

Name: yafM [H]

Synonym: NMCC_1377

Alternate gene names: 161870333

Gene position: 1396555-1395998 (Counterclockwise)

Preceding gene: 161870334

Following gene: 161870332

Centisome position: 64.85

GC content: 46.24

Gene sequence:

>558_bases
TTGCAGCAATGCCCAAAATGTCGAATTCAAGAATCCGACCTACAAAATCATTCCGAGCATAATACTATGAAATACCGTCG
TTTTTACCGCAATGGCGGCACTTACTTTTTTACGGTTGTAACCAATAAACGGCAGAAGATTTTGACCGATGATGCGGTGC
GTTTGGCTTTGCGGCAGGCGGTAATGGCGGTGCGCGAACGGTATCCGTTTGAAATTTTGGCATGGGTGTTGATGCCCGAT
CATCTGCATACCATATGGCGGCTGCCGGACAATGATTCTGCTTATTCGGAACGCTGGCGGCAAATCAAGCGGCACAGCCA
ATATTTAATCGGCGGCAATCTCAGGCTTTGGCAAAAACGCTTTTGGGAATATACTATCCGCGATGAGGCCGATTTTGCCT
GGCATTTTGATTATCTGCATTTCAATCCGGTCAAACATGGCTATGTAGGACAAATTTCCGATTGGGGGTTTTCTACGTTT
CACCGTTATGTCAAACAGGGTATTTATCCGCATAATTGGGGTGGCGGCAATGCGGACTTTTCTATTGGATACGATTGA

Upstream 100 bases:

>100_bases
GCGTTCTAGATTCCCACTTCCGTGGGAATGACGGTTCAGCAAGCGTAGGTCGGATACTTGTATCCGACAAAACCTTTAAC
ATTCCCATCATTGCAATCCA

Downstream 100 bases:

>100_bases
AGTAATGTCGGATTCGAGAATCCGACCTACGGAAAACTGAAAGAGCATCGGCTGCAGGACGGCATTATGCGCAAAGCCTG
CCGCAACCGTCCGCTGGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MQQCPKCRIQESDLQNHSEHNTMKYRRFYRNGGTYFFTVVTNKRQKILTDDAVRLALRQAVMAVRERYPFEILAWVLMPD
HLHTIWRLPDNDSAYSERWRQIKRHSQYLIGGNLRLWQKRFWEYTIRDEADFAWHFDYLHFNPVKHGYVGQISDWGFSTF
HRYVKQGIYPHNWGGGNADFSIGYD

Sequences:

>Translated_185_residues
MQQCPKCRIQESDLQNHSEHNTMKYRRFYRNGGTYFFTVVTNKRQKILTDDAVRLALRQAVMAVRERYPFEILAWVLMPD
HLHTIWRLPDNDSAYSERWRQIKRHSQYLIGGNLRLWQKRFWEYTIRDEADFAWHFDYLHFNPVKHGYVGQISDWGFSTF
HRYVKQGIYPHNWGGGNADFSIGYD
>Mature_185_residues
MQQCPKCRIQESDLQNHSEHNTMKYRRFYRNGGTYFFTVVTNKRQKILTDDAVRLALRQAVMAVRERYPFEILAWVLMPD
HLHTIWRLPDNDSAYSERWRQIKRHSQYLIGGNLRLWQKRFWEYTIRDEADFAWHFDYLHFNPVKHGYVGQISDWGFSTF
HRYVKQGIYPHNWGGGNADFSIGYD

Specific function: Unknown

COG id: COG1943

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0217 [H]

Homologues:

Organism=Escherichia coli, GI1786422, Length=161, Percent_Identity=49.6894409937888, Blast_Score=165, Evalue=1e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22383; Mature: 22383

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQCPKCRIQESDLQNHSEHNTMKYRRFYRNGGTYFFTVVTNKRQKILTDDAVRLALRQA
CCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
VMAVRERYPFEILAWVLMPDHLHTIWRLPDNDSAYSERWRQIKRHSQYLIGGNLRLWQKR
HHHHHHCCCHHHHHHHHCCHHHHHHEECCCCCCHHHHHHHHHHHHCCEEECCCHHHHHHH
FWEYTIRDEADFAWHFDYLHFNPVKHGYVGQISDWGFSTFHRYVKQGIYPHNWGGGNADF
HHHEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCE
SIGYD
ECCCC
>Mature Secondary Structure
MQQCPKCRIQESDLQNHSEHNTMKYRRFYRNGGTYFFTVVTNKRQKILTDDAVRLALRQA
CCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
VMAVRERYPFEILAWVLMPDHLHTIWRLPDNDSAYSERWRQIKRHSQYLIGGNLRLWQKR
HHHHHHCCCHHHHHHHHCCHHHHHHEECCCCCCHHHHHHHHHHHHCCEEECCCHHHHHHH
FWEYTIRDEADFAWHFDYLHFNPVKHGYVGQISDWGFSTFHRYVKQGIYPHNWGGGNADF
HHHEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCE
SIGYD
ECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7596361; 9278503 [H]