Click here to switch to the map view.

The map label for this gene is ssb [H]

Identifier: 161870329

GI number: 161870329

Start: 1392363

End: 1392887

Strand: Reverse

Name: ssb [H]

Synonym: NMCC_1373

Alternate gene names: 161870329

Gene position: 1392887-1392363 (Counterclockwise)

Preceding gene: 161870330

Following gene: 161870328

Centisome position: 64.68

GC content: 59.24

Gene sequence:

>525_bases
ATGTCATTGAACAAAGTCATCCTTATCGGCCGCCTCGGACGCGATCCCGAAGTGCGCTATATGCCCAACGGCGAGGCGGT
GTGTAATTTCAGCGTCGCCACCAGCGAAACATGGAACGACCGCAACGGCCAACGTGTAGAGCGCACCGAGTGGCACAACA
TCACGATGTACCGCAAACTGGCGGAAATTGCCGGGCAATACCTCAAAAAAGGCGGGCTGGTTTATTTGGAAGGCAGAATC
CAAAGCCGCAAATACCAAGGTAAAGACGGCATCGAGCGCACCGCTTACGATATTGTCGCCAACGAAATGAAAATGTTGGG
CGGGCGCAATGAAAACAGCGGCGGCGCACCTTACGAGGAAGGTTACGGTCAGAGTCAGGAGGCTTACCAACGCCCCGCGC
AGCAAAGCCGGCAGCCTGCCCCCGACGCGCCGTCCCATCCTCAAGAAGCACCAGCCGCGCCGCGCCGCCAACCCGTGCCG
GCCGCCGCCCCGGTCGAGGATATTGACGACGACATCCCGTTCTGA

Upstream 100 bases:

>100_bases
CATCGGTTTCAGTTTCGACGGGCAGACCGTCTATCTCAAAGTGTTGCAGAAGGGTTTCGATCAGGCTGCCGCTGAAAAAA
TCATCACAGGAGTTTAAAAA

Downstream 100 bases:

>100_bases
ATTTTACGGCAGCACATCCTCGCGGAGGGAAATCATAAAGGACGGAGAAACCTTAAACCTTACGGGGCAGGGTTTCTCTT
TTTTGCATTTGTGCCGGCTT

Product: single-stranded binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKLAEIAGQYLKKGGLVYLEGRI
QSRKYQGKDGIERTAYDIVANEMKMLGGRNENSGGAPYEEGYGQSQEAYQRPAQQSRQPAPDAPSHPQEAPAAPRRQPVP
AAAPVEDIDDDIPF

Sequences:

>Translated_174_residues
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKLAEIAGQYLKKGGLVYLEGRI
QSRKYQGKDGIERTAYDIVANEMKMLGGRNENSGGAPYEEGYGQSQEAYQRPAQQSRQPAPDAPSHPQEAPAAPRRQPVP
AAAPVEDIDDDIPF
>Mature_173_residues
SLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKLAEIAGQYLKKGGLVYLEGRIQ
SRKYQGKDGIERTAYDIVANEMKMLGGRNENSGGAPYEEGYGQSQEAYQRPAQQSRQPAPDAPSHPQEAPAAPRRQPVPA
AAPVEDIDDDIPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Homo sapiens, GI4507231, Length=113, Percent_Identity=38.0530973451327, Blast_Score=80, Evalue=8e-16,
Organism=Escherichia coli, GI1790494, Length=181, Percent_Identity=46.4088397790055, Blast_Score=139, Evalue=1e-34,
Organism=Drosophila melanogaster, GI85725234, Length=106, Percent_Identity=30.188679245283, Blast_Score=63, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24647376, Length=106, Percent_Identity=30.188679245283, Blast_Score=63, Evalue=9e-11,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 19463; Mature: 19332

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKL
CCCCCEEEEEECCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCCCHHCCCCHHHHHHH
AEIAGQYLKKGGLVYLEGRIQSRKYQGKDGIERTAYDIVANEMKMLGGRNENSGGAPYEE
HHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
GYGQSQEAYQRPAQQSRQPAPDAPSHPQEAPAAPRRQPVPAAAPVEDIDDDIPF
CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
>Mature Secondary Structure 
SLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKL
CCCCEEEEEECCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCCCHHCCCCHHHHHHH
AEIAGQYLKKGGLVYLEGRIQSRKYQGKDGIERTAYDIVANEMKMLGGRNENSGGAPYEE
HHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
GYGQSQEAYQRPAQQSRQPAPDAPSHPQEAPAAPRRQPVPAAAPVEDIDDDIPF
CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]