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The map label for this gene is sodC [H]

Identifier: 161870273

GI number: 161870273

Start: 1316213

End: 1316773

Strand: Direct

Name: sodC [H]

Synonym: NMCC_1314

Alternate gene names: 161870273

Gene position: 1316213-1316773 (Clockwise)

Preceding gene: 161870272

Following gene: 161870278

Centisome position: 61.12

GC content: 43.49

Gene sequence:

>561_bases
ATGAATATGAAAACCTTATTAGCACTAGCGGTTAGTGCAGTATGTTCAGTTGGTGTTGCGCAAGCACACGAGCATAATAC
GATACCTAAAGGTGCTTCTATTGAAGTGAAAGTGCAACAACTTGATCCAGTAAACGGTAACAAAGATGTGGGTACAGTGA
CTATTACTGAATCTAACTATGGTCTTGTGTTTACCCCTGATTTACAAGGATTAAGCGAAGGCTTACATGGTTTCCACATC
CATGAAAACCCAAGCTGTGAGCCAAAAGAAAAAGAAGGTAAATTGACAGCTGGTTTAGGCGCAGGCGGTCACTGGGATCC
TAAAGGTGCAAAACAACATGGTTACCCATGGCAAGATGATGCACACTTAGGTGATTTACCTGCATTAACTGTATTGCATG
ATGGCACAGCAACAAATCCTGTTTTAGCACCACGTCTTAAACATTTAGATGATGTTCGCGGTCACTCTATTATGATCCAC
ACGGGTGGTGATAATCACTCCGATCATCCAGCTCCACTTGGCGGTGGCGGCCCACGTATGGCATGTGGCGTGATTAAATA
A

Upstream 100 bases:

>100_bases
AAATAACAATTAATGTAAAATTTTCGTAAAAATTTATCGGCTTTTAAAACAAAATTGACTAAAATAGTCGCGAGTTTTTA
CTGCAATAAAGGAGATTGCA

Downstream 100 bases:

>100_bases
TTCGATTGTTCGAAACGAAAAGTGCGGTGAATTTTGACCGCACTTTTTTGCTAGATATTTAGCATTTAATTCACGACTTC
AGCAGTATAGTGAATTAAAT

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MNMKTLLALAVSAVCSVGVAQAHEHNTIPKGASIEVKVQQLDPVNGNKDVGTVTITESNYGLVFTPDLQGLSEGLHGFHI
HENPSCEPKEKEGKLTAGLGAGGHWDPKGAKQHGYPWQDDAHLGDLPALTVLHDGTATNPVLAPRLKHLDDVRGHSIMIH
TGGDNHSDHPAPLGGGGPRMACGVIK

Sequences:

>Translated_186_residues
MNMKTLLALAVSAVCSVGVAQAHEHNTIPKGASIEVKVQQLDPVNGNKDVGTVTITESNYGLVFTPDLQGLSEGLHGFHI
HENPSCEPKEKEGKLTAGLGAGGHWDPKGAKQHGYPWQDDAHLGDLPALTVLHDGTATNPVLAPRLKHLDDVRGHSIMIH
TGGDNHSDHPAPLGGGGPRMACGVIK
>Mature_186_residues
MNMKTLLALAVSAVCSVGVAQAHEHNTIPKGASIEVKVQQLDPVNGNKDVGTVTITESNYGLVFTPDLQGLSEGLHGFHI
HENPSCEPKEKEGKLTAGLGAGGHWDPKGAKQHGYPWQDDAHLGDLPALTVLHDGTATNPVLAPRLKHLDDVRGHSIMIH
TGGDNHSDHPAPLGGGGPRMACGVIK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Escherichia coli, GI1787934, Length=180, Percent_Identity=48.3333333333333, Blast_Score=161, Evalue=2e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 19520; Mature: 19520

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: PS00087 SOD_CU_ZN_1 ; PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMKTLLALAVSAVCSVGVAQAHEHNTIPKGASIEVKVQQLDPVNGNKDVGTVTITESNY
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEEECCCC
GLVFTPDLQGLSEGLHGFHIHENPSCEPKEKEGKLTAGLGAGGHWDPKGAKQHGYPWQDD
CEEECCCHHHHHCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC
AHLGDLPALTVLHDGTATNPVLAPRLKHLDDVRGHSIMIHTGGDNHSDHPAPLGGGGPRM
CCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC
ACGVIK
EEECCC
>Mature Secondary Structure
MNMKTLLALAVSAVCSVGVAQAHEHNTIPKGASIEVKVQQLDPVNGNKDVGTVTITESNY
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEEECCCC
GLVFTPDLQGLSEGLHGFHIHENPSCEPKEKEGKLTAGLGAGGHWDPKGAKQHGYPWQDD
CEEECCCHHHHHCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC
AHLGDLPALTVLHDGTATNPVLAPRLKHLDDVRGHSIMIHTGGDNHSDHPAPLGGGGPRM
CCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC
ACGVIK
EEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]