| Definition | Neisseria meningitidis 053442, complete genome. |
|---|---|
| Accession | NC_010120 |
| Length | 2,153,416 |
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The map label for this gene is gyrA [H]
Identifier: 161870257
GI number: 161870257
Start: 1299134
End: 1301884
Strand: Direct
Name: gyrA [H]
Synonym: NMCC_1298
Alternate gene names: 161870257
Gene position: 1299134-1301884 (Clockwise)
Preceding gene: 161870256
Following gene: 161870258
Centisome position: 60.33
GC content: 54.93
Gene sequence:
>2751_bases ATGACCGACGCAACCATCCGCCACGACCACAAATTCGCCCTCGAAACCCTGCCGGTAAGCCTTGAAGACGAAATGCGCAA AAGCTATCTCGACTACGCCATGAGCGTCATTGTCGGGCGTGCGCTGCCGGACGTTCGCGACGGTCTCAAGCCGGTACACC GCCGCGTACTGTACGCGATGCACGAATTGAAAAACAACTGGAATGCCGCCTACAAAAAATCGGCGCGCATCGTCGGCGAC GTCATCGGTAAATACCACCCCCACGGCGATATCGCCGTATACGACACCATCGTCCGTATGGCGCAAAATTTCGCTATGCG TTATGTGCTGATAGACGGACAGGGCAACTTCGGATCGGTGGACGGGCTTGCCGCCGCAGCCATGCGCTACACCGAAATCC GCATGGCGAAAATTTCCCACGAAATGCTGGCAGACATTGAGGAAGAAACCGTCAATTTCGGCCCGAACTACGACGGTAGC GAACACGAGCCGCTTGTACTGCCGACCCGTTTCCCCACACTGCTCGTCAACGGCTCGTCCGGCATCGCCGTCGGCATGGC GACCAATATCCCGCCGCACAACCTTTCCGATACCGTCAATGCCTGCCTGCGCCTGCTCGATGCACCCGACACCGAAATCG ACGAACTGATCGACATTATCCAAGCCCCCGACTTCCCGACCGGGGCAACCATCTACGGCTTGAGCGGCGTGCGCGAAGGC TATAAAACAGGCCGCGGCCGCGTCGTTATGCGCGGTAAGACCCATATCGAACCCATAGGCAGAAACGGCGAACGCGAAGC CATCGTTATCGACGAAATCCCCTATCAGGTCAACAAAGCCAAGCTGGTCGAGAAAATCGGCGATTTGGTTCGGGAAAAAA CACTGGAAGGCATTTCCGAGCTCCGCGACGAATCCGACAAATCCGGTATGCGCGTCGTTATCGAGCTGAAACGCAACGAA AATGCCGAAGTCGTCTTAAACCAACTCTACAAACTGACTCCGCTGCAAGACAGTTTCGGCATCAATATGGTGGTTTTGGT CGACGGACAACCGCGCCTGTTGAACCTGAAACAGATTCTCTCCGAATTCCTGCGCCACCGCCGCGAAGTCGTTACCCGAC GTACGCTTTTCCGGCTGAAGAAGGCACGCCATGAAGGGCATATCGCCGAAGGCAAAGCGGTCGCACTGTCCAATATCGAT GCAATCATCAAGCTCATCAAAGAATCGCCCAACGCAGCCGAGGCCAAAGACAAACTGCTTGCGCACCCTTGGCGCAGCAG CCTCGTTGAAGAAATGCTGACGCGTTCCGGTCTGGATTTGGAAATGATGCGTCCGGAAGGATTGGCTGCAAACATCGGCT TGAAAGAGCAAGGTTATTACCTGAGCGAGATTCAGGCAGATGCTATTTTACGCATGAGCCTGCGAAACCTGACCGGCCTC GATCAAGAAGAAATTGTCGAAAGCTACAAAAACCTGATGGGTAAAATCATCGACTTTGTGGATATCCTCTCCAAACCCGA ACGCATTACCCAAATCATCCGCGACGAACTGGAAGAAATCAAAACCAACTATGGCGACGAACGCCGCAGCGAAATCAACC CGTTCGGTGGCGACATTGCCGATGAAGACCTGATTCCGCAACGCGAAATGGTCGTTACCCTGACACATGGCGGCTATATC AAAACCCAGCCGACCACCGACTATCAGGCGCAGCGTCGCGGCGGGCGCGGCAAACAGGCGGCTGCCACCAAAGACGAAGA CTTTATCGAAACCCTGTTTGTTGCCAACACGCATGATTATTTGATGTGCTTTACCAATTTGGGCAAGTGTCATTGGATTA AGGTTTACAAACTGCCCGAAGGCGGACGCAACAGCCGCGGCCGTCCGATTAACAACGTCATCCAGTTGGAAGAAGGCGAA AAAGTCAGCGCGATTCTGGCAGTACGCGAGTTCCCCGAAGACCAATACGTCTTCTTCGCCACCGCGCAGGGACTGGTGAA AAAAGTCCAACTTTCCGCCTTTAAAAACGTCCGCGCCCAAGGCATTAAAGCCATCGCGCTCAAAGAAGGTGACTACCTCG TCGGCGCTGCGCAAACAGGCGGTGCGGACGACATCATGCTGTTCTCCAACTTAGGTAAAGCCATCCGCTTCAACGAATAC TGGGAAAAATCCGGCAACGACGAAGCGGAAGATGCCGACATCGAAACCGAAATTTCAGACGGCATCGAAGATGAAACCGC CGACAGCGAAAACGCACTGCCGAGCGGCAAACACGGTGTTCGCCCGTCCGGTCGCGGCAGCGGCGGTTTGCGCGGTATGC GCCTGCCTGCCGACGGCAAAATCGTCAGCCTGATTACCTTCGCCCCTGAAACCGAAGAAAGCGGTTTGCAAGTTTTAACC GCCACCGCCAACGGATACGGAAAACGCACCCCGATTGCCGATTACAGCCGCAAAAACAAAGGCGGGCAAGGCAATATTGC CATTAACACCGGCGAGCGAAACGGCGATTTGGTCGCCGCAACCTTGGTCGGCGAAACCGACGATTTGATGCTGATTACCA GCGGCGGCGTACTTATCCGCACCAAAGTCGAACAAATCCGCGAAACCGGCCGCGCCGCAGCAGGCGTGAAACTGATTAAC TTGGACGAAGGCGAAACCTTGGTATCGCTGGAACGTGTTGCCGAAGACGAATCCGAACTCTCCGACGCTTCTGTAATTTC CAATGTAACCGAACCGGAAGTCGAGAACTGA
Upstream 100 bases:
>100_bases TAATCCGCACCGTGTTTCAGACGGCGTAACCGCCGCACCGTTCCGCGTCAAAATATGCTAAAATAAGCAACAATTTTTTG CCATACGAAACATTGAAACC
Downstream 100 bases:
>100_bases AAATCATCTCCCGATGCCGTCTGAAGATTCAGACGGCATTTATTTTATCCCTCATCCGTCATCCAGTTTCTCACAATATA GCGGATTATAGTCAATTAAA
Product: DNA gyrase subunit A
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 916; Mature: 915
Protein sequence:
>916_residues MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGD VIGKYHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS EHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELKRNE NAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNID AIIKLIKESPNAAEAKDKLLAHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIADEDLIPQREMVVTLTHGGYI KTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGE KVSAILAVREFPEDQYVFFATAQGLVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEY WEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQVLT ATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLIN LDEGETLVSLERVAEDESELSDASVISNVTEPEVEN
Sequences:
>Translated_916_residues MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGD VIGKYHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS EHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELKRNE NAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNID AIIKLIKESPNAAEAKDKLLAHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIADEDLIPQREMVVTLTHGGYI KTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGE KVSAILAVREFPEDQYVFFATAQGLVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEY WEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQVLT ATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLIN LDEGETLVSLERVAEDESELSDASVISNVTEPEVEN >Mature_915_residues TDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDV IGKYHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSE HEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREGY KTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELKRNEN AEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDA IIKLIKESPNAAEAKDKLLAHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLD QEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIADEDLIPQREMVVTLTHGGYIK TQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEK VSAILAVREFPEDQYVFFATAQGLVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEYW EKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQVLTA TANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINL DEGETLVSLERVAEDESELSDASVISNVTEPEVEN
Specific function: DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings [H]
COG id: COG0188
COG function: function code L; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the topoisomerase gyrA/parC subunit family [H]
Homologues:
Organism=Homo sapiens, GI19913408, Length=342, Percent_Identity=26.0233918128655, Blast_Score=86, Evalue=1e-16, Organism=Homo sapiens, GI19913406, Length=320, Percent_Identity=25.9375, Blast_Score=83, Evalue=1e-15, Organism=Escherichia coli, GI1788562, Length=891, Percent_Identity=53.8720538720539, Blast_Score=941, Evalue=0.0, Organism=Escherichia coli, GI1789396, Length=709, Percent_Identity=34.555712270804, Blast_Score=381, Evalue=1e-107, Organism=Caenorhabditis elegans, GI212645845, Length=406, Percent_Identity=24.6305418719212, Blast_Score=81, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6324241, Length=373, Percent_Identity=26.5415549597855, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI17136538, Length=411, Percent_Identity=24.8175182481752, Blast_Score=82, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020899 - InterPro: IPR005743 - InterPro: IPR006691 - InterPro: IPR002205 - InterPro: IPR013758 - InterPro: IPR013757 - InterPro: IPR013760 [H]
Pfam domain/function: PF03989 DNA_gyraseA_C; PF00521 DNA_topoisoIV [H]
EC number: =5.99.1.3 [H]
Molecular weight: Translated: 101289; Mature: 101158
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM CCCCCCCCCCCEEHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH HELKNNWNAAYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGNFGSV HHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCEEEEEEEECCCCCCCH DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEECCC GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG CEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCEEEECHHHHHH YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE HHCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL HHCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEECHHHHH SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDAIIKLIKESPNAAEAKDKLL HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHCCCCHHHHHHHHH AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL HCHHHHHHHHHHHHHCCCCEEEECCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCC DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCC DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY CCCCCCCCCEEEEEECCCEEECCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCC LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQYVFFA EEEECCCCCEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCEEEEE TAQGLVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEY EHHHHHHHHHHHHHHHHHHCCEEEEEEECCCEEEEECCCCCCCCCHHHHHCCCCEECHHH WEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSGGLRGMRLPADGK HHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC IVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAA EEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCHHCCCCCCCCEEEECCCCCCCEEEE TLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDESEL EEECCCCCEEEEECCCEEEEHHHHHHHHCCCHHHCEEEEECCCCCHHHHHHHHHCCHHHH SDASVISNVTEPEVEN HHHHHHHCCCCCCCCC >Mature Secondary Structure TDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM CCCCCCCCCCEEHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH HELKNNWNAAYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGNFGSV HHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCEEEEEEEECCCCCCCH DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEECCC GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG CEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCEEEECHHHHHH YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE HHCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL HHCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEECHHHHH SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDAIIKLIKESPNAAEAKDKLL HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHCCCCHHHHHHHHH AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL HCHHHHHHHHHHHHHCCCCEEEECCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCC DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCC DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY CCCCCCCCCEEEEEECCCEEECCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCC LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQYVFFA EEEECCCCCEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCEEEEE TAQGLVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEY EHHHHHHHHHHHHHHHHHHCCEEEEEEECCCEEEEECCCCCCCCCHHHHHCCCCEECHHH WEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSGGLRGMRLPADGK HHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC IVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAA EEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCHHCCCCCCCCEEEECCCCCCCEEEE TLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDESEL EEECCCCCEEEEECCCEEEEHHHHHHHHCCCHHHCEEEEECCCCCHHHHHHHHHCCHHHH SDASVISNVTEPEVEN HHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7830580 [H]