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The map label for this gene is yhdJ [C]

Identifier: 161870247

GI number: 161870247

Start: 1289070

End: 1290185

Strand: Direct

Name: yhdJ [C]

Synonym: NMCC_1288

Alternate gene names: 161870247

Gene position: 1289070-1290185 (Clockwise)

Preceding gene: 161870246

Following gene: 161870248

Centisome position: 59.86

GC content: 34.86

Gene sequence:

>1116_bases
ATGAAAAACAGGTTGGAGATTGCTAGAGAATTATTGGCAGATGATGGCGCAATTTATATAAACTTAGATTACCACGAAGT
ACATTATTGCAAAGTTTTGATGGACGAGATTTTTGGTGAATACAATTTCCAGCGTGAAATTATTTGGCGTATTGGTTGGG
TATCAGGCTATAAAACTACTGTCTCCAATTATATCCGTAATCATGACACCATTTTATTTTATTCAAAAGATTATAATCAT
CTGAATTTTAACAAATATTATATTGATAATAAGCATTTTAAGGTATTAGTAGATTTAGATAGGGCAACAAAAAATACATT
TACAAAATTCGGTATTAATAAAGAAACTGCCGAGAAAATCCTGCAAGAAATTAATTTTAGCAACCGTCCCGAACGTTATC
CGTTAGAAGATGTTTGGAATGCGAATGAATATGATGATTTGAATAGTATTGCAATTGTCAGCTATTCAGGCGAAAGCGTA
TCAAAAATGCTGGGATTAGAGGAAATTAAAGGACAAAAATCTGAAAAACTGTTAAAACGGATTTTAGAAGCGCATACCAA
GCCAAACGATATTGTTTTGGATTTTTTCGGTGGTAGCGGTACAACGGCAGCCGTTGCCCATAAAATGAATCGCCAATATA
TCTGTATCGAGCAAATAGACAAACAAACTGACACTATTGTAAAGCGGTTAAACAAGATTTTAGTAAACGAATCAAGTGGG
ATTTCCAAAGCCGTGAATTGGCAAGGTGGCGGCGAGTTTGTTTATGCCGAACTTGCTCCATTTAACGAAACCGCAAAACA
ACAAATTTTGGCTTGCGAAGATTCAGACGGCATCAAAACACTGTTTGAAGGTTTATGCGAACGCTATTTCTTGAAATACA
ACGTCAGCATAAATGAATTTAGCCAAATTATTGAAGAGCCTGAATTTCAATCTTTGCCATTAGACGAACAAAAACAAATG
GTGCTTGAAATGTTGGATTTAAATCAAATGTATGTTTCATTATCCGAAATGGATGACGAACAATTTGCAGATTGCCTGAA
CGATGATGATAAAGCCTTAAGCCGTGCATTCTATCAATCAGTAAAAAATCAAGCGGAGAAAAAAGATGGCGAATAA

Upstream 100 bases:

>100_bases
GGGCAAAATCAAGCTGATTTATATTGACCCGCCGTATAACACAGAAACCGATAGCTTTGCATATAACGATAAATTTAATC
GCTCTACTTGGCTGACATTT

Downstream 100 bases:

>100_bases
TAAAACGTTGTTTGAAGTGATTGAAAATGAACGTAAAGCGGTTAAAAAATACAAGCCTGAATTACTTGAAATGCCAGAAT
TTACGTCCAAAAACTTAAAA

Product: type III restriction/modification system modification methylase

Products: NA

Alternate protein names: M.HindVIP; HindVIP methyltransferase [H]

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MKNRLEIARELLADDGAIYINLDYHEVHYCKVLMDEIFGEYNFQREIIWRIGWVSGYKTTVSNYIRNHDTILFYSKDYNH
LNFNKYYIDNKHFKVLVDLDRATKNTFTKFGINKETAEKILQEINFSNRPERYPLEDVWNANEYDDLNSIAIVSYSGESV
SKMLGLEEIKGQKSEKLLKRILEAHTKPNDIVLDFFGGSGTTAAVAHKMNRQYICIEQIDKQTDTIVKRLNKILVNESSG
ISKAVNWQGGGEFVYAELAPFNETAKQQILACEDSDGIKTLFEGLCERYFLKYNVSINEFSQIIEEPEFQSLPLDEQKQM
VLEMLDLNQMYVSLSEMDDEQFADCLNDDDKALSRAFYQSVKNQAEKKDGE

Sequences:

>Translated_371_residues
MKNRLEIARELLADDGAIYINLDYHEVHYCKVLMDEIFGEYNFQREIIWRIGWVSGYKTTVSNYIRNHDTILFYSKDYNH
LNFNKYYIDNKHFKVLVDLDRATKNTFTKFGINKETAEKILQEINFSNRPERYPLEDVWNANEYDDLNSIAIVSYSGESV
SKMLGLEEIKGQKSEKLLKRILEAHTKPNDIVLDFFGGSGTTAAVAHKMNRQYICIEQIDKQTDTIVKRLNKILVNESSG
ISKAVNWQGGGEFVYAELAPFNETAKQQILACEDSDGIKTLFEGLCERYFLKYNVSINEFSQIIEEPEFQSLPLDEQKQM
VLEMLDLNQMYVSLSEMDDEQFADCLNDDDKALSRAFYQSVKNQAEKKDGE
>Mature_371_residues
MKNRLEIARELLADDGAIYINLDYHEVHYCKVLMDEIFGEYNFQREIIWRIGWVSGYKTTVSNYIRNHDTILFYSKDYNH
LNFNKYYIDNKHFKVLVDLDRATKNTFTKFGINKETAEKILQEINFSNRPERYPLEDVWNANEYDDLNSIAIVSYSGESV
SKMLGLEEIKGQKSEKLLKRILEAHTKPNDIVLDFFGGSGTTAAVAHKMNRQYICIEQIDKQTDTIVKRLNKILVNESSG
ISKAVNWQGGGEFVYAELAPFNETAKQQILACEDSDGIKTLFEGLCERYFLKYNVSINEFSQIIEEPEFQSLPLDEQKQM
VLEMLDLNQMYVSLSEMDDEQFADCLNDDDKALSRAFYQSVKNQAEKKDGE

Specific function: Unknown

COG id: COG2189

COG function: function code L; Adenine specific DNA methylase Mod

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002941
- InterPro:   IPR002052
- InterPro:   IPR001091 [H]

Pfam domain/function: PF01555 N6_N4_Mtase [H]

EC number: =2.1.1.72 [H]

Molecular weight: Translated: 43061; Mature: 43061

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNRLEIARELLADDGAIYINLDYHEVHYCKVLMDEIFGEYNFQREIIWRIGWVSGYKTT
CCCHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCHHHEEEECCCCCHHHH
VSNYIRNHDTILFYSKDYNHLNFNKYYIDNKHFKVLVDLDRATKNTFTKFGINKETAEKI
HHHHHCCCCEEEEEECCCCCCCCEEEEECCCCEEEEEEECHHHHHHHHHCCCCHHHHHHH
LQEINFSNRPERYPLEDVWNANEYDDLNSIAIVSYSGESVSKMLGLEEIKGQKSEKLLKR
HHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEEEEECCHHHHHHHCHHHHCCCHHHHHHHH
ILEAHTKPNDIVLDFFGGSGTTAAVAHKMNRQYICIEQIDKQTDTIVKRLNKILVNESSG
HHHHCCCCCCEEEEEECCCCCHHHHHHHCCCCEEEHHHHCCHHHHHHHHHHHHHHCCCCC
ISKAVNWQGGGEFVYAELAPFNETAKQQILACEDSDGIKTLFEGLCERYFLKYNVSINEF
CCCCCCCCCCCCEEEEEECCCCHHHHHHEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHH
SQIIEEPEFQSLPLDEQKQMVLEMLDLNQMYVSLSEMDDEQFADCLNDDDKALSRAFYQS
HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHH
VKNQAEKKDGE
HHHHHHHCCCC
>Mature Secondary Structure
MKNRLEIARELLADDGAIYINLDYHEVHYCKVLMDEIFGEYNFQREIIWRIGWVSGYKTT
CCCHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCHHHEEEECCCCCHHHH
VSNYIRNHDTILFYSKDYNHLNFNKYYIDNKHFKVLVDLDRATKNTFTKFGINKETAEKI
HHHHHCCCCEEEEEECCCCCCCCEEEEECCCCEEEEEEECHHHHHHHHHCCCCHHHHHHH
LQEINFSNRPERYPLEDVWNANEYDDLNSIAIVSYSGESVSKMLGLEEIKGQKSEKLLKR
HHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEEEEECCHHHHHHHCHHHHCCCHHHHHHHH
ILEAHTKPNDIVLDFFGGSGTTAAVAHKMNRQYICIEQIDKQTDTIVKRLNKILVNESSG
HHHHCCCCCCEEEEEECCCCCHHHHHHHCCCCEEEHHHHCCHHHHHHHHHHHHHHCCCCC
ISKAVNWQGGGEFVYAELAPFNETAKQQILACEDSDGIKTLFEGLCERYFLKYNVSINEF
CCCCCCCCCCCCEEEEEECCCCHHHHHHEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHH
SQIIEEPEFQSLPLDEQKQMVLEMLDLNQMYVSLSEMDDEQFADCLNDDDKALSRAFYQS
HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHH
VKNQAEKKDGE
HHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]