Click here to switch to the map view.

The map label for this gene is ybeQ [C]

Identifier: 161870202

GI number: 161870202

Start: 1234061

End: 1235494

Strand: Direct

Name: ybeQ [C]

Synonym: NMCC_1242

Alternate gene names: 161870202

Gene position: 1234061-1235494 (Clockwise)

Preceding gene: 161870201

Following gene: 161870203

Centisome position: 57.31

GC content: 54.39

Gene sequence:

>1434_bases
ATGATTCGACAAAACGGAAAACGATCTGATATGAACAATCCCGACTTACCCTATCGGCAGGCCTTAGAACGCCTGTCTCA
AAAACAATATAACTTTACCGAAGTCCGCCGACTGCTGACAGAAGCGGCCTCGGCAGGTCATCCCGCCGCCGCATTCGAGT
TGGCAAAACACCTGATGGACGCGGACAGCCCCTACCAAGACCGCGAACAAGGTATGGAAATGCTCCGCATCGCCGCCGAA
CAGGGACATCCCTACGCGCGTTACAATCTGGCATATATCCAAGAATTGGAAGGCGCACCCCCGGAAACCCTGATATCGCT
TTACAGACCATTAGCAGAGGAAGGGCTGCCTGAAGCACAAGTCCGCCTGATGTACCTGCTGTATGCGTCCCGACATTTTG
AAGAAGCCCTGAAATGGGCAAAAACAAGCGCAAAAAACAACAACCCCCACGGGCAATACCTGCTTGCCCAATACTGCCGG
TACGGCACGCCGCCGGATTTTGAAACGGCACACCTTCTCTACCGCGAGGCTGCAGCACAAGGCTTGGCGGCGGCACAATG
GCAGCTCGGCCTTCAATACCGTTTCGGACAAGGTACACCAACCGACACGACCCAAGCTATCAATCATTTGCGCGCCGCCG
CACAACAAGGATACATTCCCGCCTACACCCCGCTTGCCGAGCTCATCCTACCTACGGCTCCCGATAAAGCCGTTTACCGG
TTTCAACAGGCCGCACAGGAAAATGACCCCGATGCCCATGCCGCACTTGCCGACATCTACCTGCAAGGCAAGCATCCGGA
AAGAAACTACAAACTTGCCCTGCATCACGCCGAAGCAGCCGCCGCCGAACGCCATCCCGAAGGTTTGCGGATACTGGGCG
ACATCTGCCGCTACGGACTGGGCATGACTTCCGATAAAGAAAAAGCCCGGCATTATTACCGGCAGGCAGCCGAAGCCGGC
AGCCTTACCGCCTATCAGAAACTCATATCCGACAGCGCGTTAAACCATCCTGACCAATACGGCGGCATTAAAGATTCCGC
CATTAGGCGGCAAAGGGCAGAACAGCTTTATCAAAAAGCCCAAGCCCTGCATTATGGATTACAATGCGCGCCCGAATACG
CAGCCGCGCTCAAACTCTACACAGAAGCCGCAGAACTCGGACACAGCAAAGCCCAAACCAATCTGGGCAGCATGTATTAC
TTCGGACAGGGTATGACCGCCGACTACAATGAAGCACGCAAATGGTTTGAAAAAGCCGCCGCAAAAAAAGACAGTATGGC
GTTCTACAACCTCGCCTGCATCCATTACAGCGGACACGGTGTCGGGCCGGACAAAGAAAAAGCCTGCCGCTACCTGCAAG
AAGCCATAAACAACGGATACGGGCAAAAAAGCGTCCTGCAAGAACTGCTGCAACAATGGCAAAATGCCGTCTGA

Upstream 100 bases:

>100_bases
AAGTGAATCGGTTCCGTACTATTTGTACTGTCTGCGGCTTCGTCGCCTTGTCCTGATTTTTGTTAATCCACTATAAACCT
AACTTCATAACACAATAACG

Downstream 100 bases:

>100_bases
ACAGCGTTACACCTACCCTGCCGAAACGAAACAGGTATAATCGCCCCTTTCCCTTCCCGCCGTCCGAACAGGCCTTTCAC
ATTCAGACGGCATCCTGATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 477; Mature: 477

Protein sequence:

>477_residues
MIRQNGKRSDMNNPDLPYRQALERLSQKQYNFTEVRRLLTEAASAGHPAAAFELAKHLMDADSPYQDREQGMEMLRIAAE
QGHPYARYNLAYIQELEGAPPETLISLYRPLAEEGLPEAQVRLMYLLYASRHFEEALKWAKTSAKNNNPHGQYLLAQYCR
YGTPPDFETAHLLYREAAAQGLAAAQWQLGLQYRFGQGTPTDTTQAINHLRAAAQQGYIPAYTPLAELILPTAPDKAVYR
FQQAAQENDPDAHAALADIYLQGKHPERNYKLALHHAEAAAAERHPEGLRILGDICRYGLGMTSDKEKARHYYRQAAEAG
SLTAYQKLISDSALNHPDQYGGIKDSAIRRQRAEQLYQKAQALHYGLQCAPEYAAALKLYTEAAELGHSKAQTNLGSMYY
FGQGMTADYNEARKWFEKAAAKKDSMAFYNLACIHYSGHGVGPDKEKACRYLQEAINNGYGQKSVLQELLQQWQNAV

Sequences:

>Translated_477_residues
MIRQNGKRSDMNNPDLPYRQALERLSQKQYNFTEVRRLLTEAASAGHPAAAFELAKHLMDADSPYQDREQGMEMLRIAAE
QGHPYARYNLAYIQELEGAPPETLISLYRPLAEEGLPEAQVRLMYLLYASRHFEEALKWAKTSAKNNNPHGQYLLAQYCR
YGTPPDFETAHLLYREAAAQGLAAAQWQLGLQYRFGQGTPTDTTQAINHLRAAAQQGYIPAYTPLAELILPTAPDKAVYR
FQQAAQENDPDAHAALADIYLQGKHPERNYKLALHHAEAAAAERHPEGLRILGDICRYGLGMTSDKEKARHYYRQAAEAG
SLTAYQKLISDSALNHPDQYGGIKDSAIRRQRAEQLYQKAQALHYGLQCAPEYAAALKLYTEAAELGHSKAQTNLGSMYY
FGQGMTADYNEARKWFEKAAAKKDSMAFYNLACIHYSGHGVGPDKEKACRYLQEAINNGYGQKSVLQELLQQWQNAV
>Mature_477_residues
MIRQNGKRSDMNNPDLPYRQALERLSQKQYNFTEVRRLLTEAASAGHPAAAFELAKHLMDADSPYQDREQGMEMLRIAAE
QGHPYARYNLAYIQELEGAPPETLISLYRPLAEEGLPEAQVRLMYLLYASRHFEEALKWAKTSAKNNNPHGQYLLAQYCR
YGTPPDFETAHLLYREAAAQGLAAAQWQLGLQYRFGQGTPTDTTQAINHLRAAAQQGYIPAYTPLAELILPTAPDKAVYR
FQQAAQENDPDAHAALADIYLQGKHPERNYKLALHHAEAAAAERHPEGLRILGDICRYGLGMTSDKEKARHYYRQAAEAG
SLTAYQKLISDSALNHPDQYGGIKDSAIRRQRAEQLYQKAQALHYGLQCAPEYAAALKLYTEAAELGHSKAQTNLGSMYY
FGQGMTADYNEARKWFEKAAAKKDSMAFYNLACIHYSGHGVGPDKEKACRYLQEAINNGYGQKSVLQELLQQWQNAV

Specific function: Unknown

COG id: COG0790

COG function: function code R; FOG: TPR repeat, SEL1 subfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 9 Sel1-like repeats [H]

Homologues:

Organism=Homo sapiens, GI19923669, Length=519, Percent_Identity=22.9287090558767, Blast_Score=73, Evalue=5e-13,
Organism=Homo sapiens, GI151301150, Length=378, Percent_Identity=25.3968253968254, Blast_Score=70, Evalue=3e-12,
Organism=Escherichia coli, GI87081769, Length=332, Percent_Identity=28.6144578313253, Blast_Score=96, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17563256, Length=504, Percent_Identity=24.4047619047619, Blast_Score=65, Evalue=1e-10,
Organism=Drosophila melanogaster, GI21355295, Length=391, Percent_Identity=24.2966751918159, Blast_Score=82, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006597
- InterPro:   IPR011990 [H]

Pfam domain/function: PF08238 Sel1 [H]

EC number: NA

Molecular weight: Translated: 53640; Mature: 53640

Theoretical pI: Translated: 7.31; Mature: 7.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRQNGKRSDMNNPDLPYRQALERLSQKQYNFTEVRRLLTEAASAGHPAAAFELAKHLMD
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
ADSPYQDREQGMEMLRIAAEQGHPYARYNLAYIQELEGAPPETLISLYRPLAEEGLPEAQ
CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH
VRLMYLLYASRHFEEALKWAKTSAKNNNPHGQYLLAQYCRYGTPPDFETAHLLYREAAAQ
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
GLAAAQWQLGLQYRFGQGTPTDTTQAINHLRAAAQQGYIPAYTPLAELILPTAPDKAVYR
HHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHH
FQQAAQENDPDAHAALADIYLQGKHPERNYKLALHHAEAAAAERHPEGLRILGDICRYGL
HHHHHHCCCCHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHCCCCHHHHHHHHHHHCC
GMTSDKEKARHYYRQAAEAGSLTAYQKLISDSALNHPDQYGGIKDSAIRRQRAEQLYQKA
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHH
QALHYGLQCAPEYAAALKLYTEAAELGHSKAQTNLGSMYYFGQGMTADYNEARKWFEKAA
HHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHH
AKKDSMAFYNLACIHYSGHGVGPDKEKACRYLQEAINNGYGQKSVLQELLQQWQNAV
CCCCCCHHEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIRQNGKRSDMNNPDLPYRQALERLSQKQYNFTEVRRLLTEAASAGHPAAAFELAKHLMD
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
ADSPYQDREQGMEMLRIAAEQGHPYARYNLAYIQELEGAPPETLISLYRPLAEEGLPEAQ
CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH
VRLMYLLYASRHFEEALKWAKTSAKNNNPHGQYLLAQYCRYGTPPDFETAHLLYREAAAQ
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
GLAAAQWQLGLQYRFGQGTPTDTTQAINHLRAAAQQGYIPAYTPLAELILPTAPDKAVYR
HHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHH
FQQAAQENDPDAHAALADIYLQGKHPERNYKLALHHAEAAAAERHPEGLRILGDICRYGL
HHHHHHCCCCHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHCCCCHHHHHHHHHHHCC
GMTSDKEKARHYYRQAAEAGSLTAYQKLISDSALNHPDQYGGIKDSAIRRQRAEQLYQKA
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHH
QALHYGLQCAPEYAAALKLYTEAAELGHSKAQTNLGSMYYFGQGMTADYNEARKWFEKAA
HHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHH
AKKDSMAFYNLACIHYSGHGVGPDKEKACRYLQEAINNGYGQKSVLQELLQQWQNAV
CCCCCCHHEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10710307 [H]