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The map label for this gene is ihfB [H]

Identifier: 161870175

GI number: 161870175

Start: 1208709

End: 1208996

Strand: Direct

Name: ihfB [H]

Synonym: NMCC_1215

Alternate gene names: 161870175

Gene position: 1208709-1208996 (Clockwise)

Preceding gene: 161870174

Following gene: 161870177

Centisome position: 56.13

GC content: 51.04

Gene sequence:

>288_bases
TTGGCAGAAGTGTTTGCCGCCAAAAACGGCACGCATCTTCTGGCAAAAGACGTAGAGTACAGCGTAAAAGTCTTGGTTGA
CACCATGACTAGATCGCTTGCCCGAGGTCAACGCATCGAAATCCGCGGTTTCGGCAGCTTCGATTTGAACCATCGTCCTG
CCCGCATCGGTCGCAATCCCAAAACCGGCGAGCGTGTGGAAGTACCTGAAAAACATGTACCCCACTTCAAGCCCGGTAAA
GAATTGCGCGAGCGGGTCGACTTGGCTTTAAAAGAAAATGCCAATTAA

Upstream 100 bases:

>100_bases
AATGCCGGCACCACCAGCTTGGGCGACCTGCTGAAAGCCAAACTCTCCGGCGAACAAGAATAAGGTTGCAGACATGACAA
AGTCTGAGTTAATGGTTCGT

Downstream 100 bases:

>100_bases
ACCTTAGCATCAAAACGCCGCTGTTACGCGGCGTTTTTTCTGTGGTTTAACTTCATCCGCTGCTTCAATACCTTGAGCCA
AGCAAGCAACGGATTAGAGC

Product: integration host factor subunit beta

Products: NA

Alternate protein names: IHF-beta [H]

Number of amino acids: Translated: 95; Mature: 94

Protein sequence:

>95_residues
MAEVFAAKNGTHLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNHRPARIGRNPKTGERVEVPEKHVPHFKPGK
ELRERVDLALKENAN

Sequences:

>Translated_95_residues
MAEVFAAKNGTHLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNHRPARIGRNPKTGERVEVPEKHVPHFKPGK
ELRERVDLALKENAN
>Mature_94_residues
AEVFAAKNGTHLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNHRPARIGRNPKTGERVEVPEKHVPHFKPGKE
LRERVDLALKENAN

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1787141, Length=82, Percent_Identity=57.3170731707317, Blast_Score=101, Evalue=7e-24,
Organism=Escherichia coli, GI1788005, Length=89, Percent_Identity=37.0786516853933, Blast_Score=64, Evalue=1e-12,
Organism=Escherichia coli, GI1790433, Length=58, Percent_Identity=43.1034482758621, Blast_Score=63, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 10746; Mature: 10614

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEVFAAKNGTHLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNHRPARIGRNP
CCCEECCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCC
KTGERVEVPEKHVPHFKPGKELRERVDLALKENAN
CCCCCCCCCCCCCCCCCCCHHHHHHHCCHHCCCCC
>Mature Secondary Structure 
AEVFAAKNGTHLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNHRPARIGRNP
CCEECCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCC
KTGERVEVPEKHVPHFKPGKELRERVDLALKENAN
CCCCCCCCCCCCCCCCCCCHHHHHHHCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9714829 [H]