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The map label for this gene is ygfZ [C]

Identifier: 161870132

GI number: 161870132

Start: 1160912

End: 1161826

Strand: Direct

Name: ygfZ [C]

Synonym: NMCC_1171

Alternate gene names: 161870132

Gene position: 1160912-1161826 (Clockwise)

Preceding gene: 161870130

Following gene: 161870133

Centisome position: 53.91

GC content: 54.75

Gene sequence:

>915_bases
ATGCGGCAACCGCATAAACAGATTTCCTTTATATTTCAGAGTACGCAAATGATGAAAACCTTACTGCCCTTTTTCGGCGT
GGTGCGCGTCAGCGGCGAAGACCGCCAAACCTTCCTGCACGGACAGCTTTCCAACGACATCAATAATCTTCAGACCGGGC
AGGCGTGTTATGCGACTTACAACACGCCCAAAGGCCGCGTCATCGCCAATATGATTGTCGTCAACCGAGGCGGCGATTTG
CTGCTGATTATGGCGCAAGACTTGCTTGAAGCAACGGTCAAACGTTTGCGGATGTTTGTGTTACGCGCCAAAGCCGTTTT
TGAAATCCTTGAAGATTACGCCGTCGACGCGGAATTGGCAGCATCCGCCGAACCGCTTGCCGCGCAAGAACCCAGTCTCG
TCTTTACCGCCGAATGCGTTTCAGACGGCATCTGCACCGTCGTCCTGCCCCATCGGGGCATTTTGCACATCGCCCCCAAA
AACGCCCTGCCCCCTTATGATGCCGCCGCCGAAAGCGCGTGGCGGCTGCACGAAATCCGCAGCGGTTATCCGTGGATATG
CGCGGCTACCAAAGAAACCGCCGTCGCCCAAATGCTCAACCAGCACATCATCGGCGGCGTACACTTCAAAAAAGGCTGCT
ATCCGGGACAGGAAATCATCGCGCGTGCCCAGTATCGGGGGCAGGTCAAACGCGGCTTGGCGGTATTGTCGGGAAATTCG
GCAGCCGAAGTGGGTAGCGTATTGGCAGCGGACGGCGAAGAGGCCGGCATCGTGCTTGACAGCGTAAAAGATTCGGAAAA
CTTTACCGCCCTTGCCGTAATTAAATTCTCCGCCGCTCAAAAAACACTGTCCGCCCCAAACGGCGGCAGCTTCAAAGCGG
TTCATCTCTTCTTTAAAACCGAAAATGCAGAATAA

Upstream 100 bases:

>100_bases
TGGGTTGCCGCCGGCAGAACGCCCGCCCGCGCCTGCGTGGAAGCTCGGCTCGCCCGTCCGGAGTGGCGCGTCGAAATCAA
AATAACCGCCATGAAGAAAG

Downstream 100 bases:

>100_bases
GCCCTCTAATGCCGTCTGAACCTTTTTCAGACGGCATTTTAAAACCGCCCCTGTTTTCGGTTACAATGCCGCATCCCTAA
TTTTTCAAACCACCACCATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MRQPHKQISFIFQSTQMMKTLLPFFGVVRVSGEDRQTFLHGQLSNDINNLQTGQACYATYNTPKGRVIANMIVVNRGGDL
LLIMAQDLLEATVKRLRMFVLRAKAVFEILEDYAVDAELAASAEPLAAQEPSLVFTAECVSDGICTVVLPHRGILHIAPK
NALPPYDAAAESAWRLHEIRSGYPWICAATKETAVAQMLNQHIIGGVHFKKGCYPGQEIIARAQYRGQVKRGLAVLSGNS
AAEVGSVLAADGEEAGIVLDSVKDSENFTALAVIKFSAAQKTLSAPNGGSFKAVHLFFKTENAE

Sequences:

>Translated_304_residues
MRQPHKQISFIFQSTQMMKTLLPFFGVVRVSGEDRQTFLHGQLSNDINNLQTGQACYATYNTPKGRVIANMIVVNRGGDL
LLIMAQDLLEATVKRLRMFVLRAKAVFEILEDYAVDAELAASAEPLAAQEPSLVFTAECVSDGICTVVLPHRGILHIAPK
NALPPYDAAAESAWRLHEIRSGYPWICAATKETAVAQMLNQHIIGGVHFKKGCYPGQEIIARAQYRGQVKRGLAVLSGNS
AAEVGSVLAADGEEAGIVLDSVKDSENFTALAVIKFSAAQKTLSAPNGGSFKAVHLFFKTENAE
>Mature_304_residues
MRQPHKQISFIFQSTQMMKTLLPFFGVVRVSGEDRQTFLHGQLSNDINNLQTGQACYATYNTPKGRVIANMIVVNRGGDL
LLIMAQDLLEATVKRLRMFVLRAKAVFEILEDYAVDAELAASAEPLAAQEPSLVFTAECVSDGICTVVLPHRGILHIAPK
NALPPYDAAAESAWRLHEIRSGYPWICAATKETAVAQMLNQHIIGGVHFKKGCYPGQEIIARAQYRGQVKRGLAVLSGNS
AAEVGSVLAADGEEAGIVLDSVKDSENFTALAVIKFSAAQKTLSAPNGGSFKAVHLFFKTENAE

Specific function: Folate-binding protein involved in regulating the level of ATP-dnaA and in the modification of some tRNAs. It is probably a key factor in regulatory networks that act via tRNA modification, such as initiation of chromosomal replication [H]

COG id: COG0354

COG function: function code R; Predicted aminomethyltransferase related to GcvT

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tRNA-modifying ygfZ family [H]

Homologues:

Organism=Escherichia coli, GI1789265, Length=264, Percent_Identity=25, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017703
- InterPro:   IPR006222 [H]

Pfam domain/function: PF01571 GCV_T [H]

EC number: NA

Molecular weight: Translated: 32987; Mature: 32987

Theoretical pI: Translated: 7.57; Mature: 7.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQPHKQISFIFQSTQMMKTLLPFFGVVRVSGEDRQTFLHGQLSNDINNLQTGQACYATY
CCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEECHHHCCHHHCCCCCEEEEEC
NTPKGRVIANMIVVNRGGDLLLIMAQDLLEATVKRLRMFVLRAKAVFEILEDYAVDAELA
CCCCCCEEEEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ASAEPLAAQEPSLVFTAECVSDGICTVVLPHRGILHIAPKNALPPYDAAAESAWRLHEIR
CCCCCCCCCCCCEEEEHHHHCCCCEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHHHHH
SGYPWICAATKETAVAQMLNQHIIGGVHFKKGCYPGQEIIARAQYRGQVKRGLAVLSGNS
CCCCEEEECCHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHHCEEEEECCC
AAEVGSVLAADGEEAGIVLDSVKDSENFTALAVIKFSAAQKTLSAPNGGSFKAVHLFFKT
HHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEEEEEHHHHHHHCCCCCCCEEEEEEEEEE
ENAE
CCCC
>Mature Secondary Structure
MRQPHKQISFIFQSTQMMKTLLPFFGVVRVSGEDRQTFLHGQLSNDINNLQTGQACYATY
CCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEECHHHCCHHHCCCCCEEEEEC
NTPKGRVIANMIVVNRGGDLLLIMAQDLLEATVKRLRMFVLRAKAVFEILEDYAVDAELA
CCCCCCEEEEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ASAEPLAAQEPSLVFTAECVSDGICTVVLPHRGILHIAPKNALPPYDAAAESAWRLHEIR
CCCCCCCCCCCCEEEEHHHHCCCCEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHHHHH
SGYPWICAATKETAVAQMLNQHIIGGVHFKKGCYPGQEIIARAQYRGQVKRGLAVLSGNS
CCCCEEEECCHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHHCEEEEECCC
AAEVGSVLAADGEEAGIVLDSVKDSENFTALAVIKFSAAQKTLSAPNGGSFKAVHLFFKT
HHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEEEEEHHHHHHHCCCCCCCEEEEEEEEEE
ENAE
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA