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The map label for this gene is 161870056

Identifier: 161870056

GI number: 161870056

Start: 1074745

End: 1076289

Strand: Direct

Name: 161870056

Synonym: NMCC_1092

Alternate gene names: NA

Gene position: 1074745-1076289 (Clockwise)

Preceding gene: 161870055

Following gene: 161870057

Centisome position: 49.91

GC content: 39.03

Gene sequence:

>1545_bases
ATGATGCATGATTGCTGTCCTAAATGTGGCATATATATTGCTTTTCACCGACAAGATTTAGGTAAACCTAATTTGCAGCG
CTTTACAGAGTTGAAATATTGTTGGAATTGTCACTATGACTTGAGCAACAGTCCTTGTGAGAATGTTATTTTCTTTAATG
ATGAAATCAGGCTGCAATGGCAAAATTGGTTAAACCAAATTGCTAATCTTGATTATCTTTCTAATACCATTCGTTCTCGA
ATCAAAAATATTGCGCCTCAAATTAAAATTGCTAAACGACTAAGCCATAAAGCAGCAGAAATGAAATTTTCTCCTTTACA
AGGTAGCTTTCCAAATGCCGATTATCCGCTTTCAGTGGTACAAATAGATCATACAAAGTTAGACATTATTTTAGTTGACG
ATATATATCGTAAGCCTATTGGTAGGCCGTGGATTACGCTGGCGATTGATGTGTTCAGTCGAATGGTTACGGGATTTTAT
GTGTCATTCGATCCACCAAGTGCATTATCTACAGGTTTGTGTTTAGCACATAGTATTTTGTCTAAGGAAAGCTGGTTGGC
AAAACATGGAGTGAAAGGGCGGTGGCCTGTGTGGGGTTTGCCACGCAAAATTCATTTGGATAATGCAAAAGAATTCCGTG
GCAAAGTGCTGGAAAAGGCGTGTAAACAATACGGTATTGAAATTGAGTGGAGGCCTGTGGCACGTCCTCATTTCGGAGGA
CACATTGAGCGTTTACTAGGTACGATTTTGGATGAAGTCCACGGTTTAACTGGTACTACTTTTGCAAATACACAACAGAG
AAAAGATTATGCTTCCGAAAGCAAGGCGGCATTAACGCTAACTGAATTTGAAACGTGGTTAACACTATTTATTTGTGATG
TTTATCATCAGCGTACTCATTCTGGATTGGGGATCTCACCGTTAGCCAAATGGAAATCAGGTGTATTAGGAGATGATGTT
TCTTTAGGAACAGGATTACCTGATAAAGTGGTTGATGAGACACTATTGCGCTTGACCTTTATGCCGTTTGAAATGCGAAC
GGTGCAGCAATATGGGGTAGTTATCCATAAAATCACTTATTGGCATGACGTTTTACGACCATGGATTGCAGCAACTAATC
CGACTAATCCTAGACAGGCTCGCCAGTTCATTTTTCGCATAGATCCACGTGATTTAAGCGTGATTTGGTTTTATGACCCA
GATTTATCGATGTATTTTCCAATACCTTATCGGAACAGTTCGAATCCAGTTATCAGCATTTGGGAGTTACGAGAGATTCA
GAGACAATTAAAAAATGAGCAGAAACAGAATATTGATGAGAACATGATTTTTACAGCATACGGACGAATGCGAGAATTGG
AACAGCAAGCTCAAGGTAAGACTAAAGCTATCCGTCGCGCTCAACAACGTCGCCAATTAGATCAACGTACTCGAGCATCT
TTACCTATGTCTCAAATTGATTCGAGGAATATTATATCGTCTGAAAATGAGGAAAATATGTTTGATGATATTCAGCCTTT
TGATGATTTGGACGATTTATCATGA

Upstream 100 bases:

>100_bases
GTTGCCATAAACAAAATTTACCAGCTCCTCATGCCATGAAACATATTTCCGAAAATCATGGCGCATAGCCCTATATACAT
TTTGTCCAATACATCAAATC

Downstream 100 bases:

>100_bases
ATTATCCTCACCTTTCTCCCAAAGCAAAAGAACAACTAAAGTATAGCGATATTGAGCGCATCGAATACATACGTTCCCCT
CGTTGGATAGGTTATCCGCA

Product: hypothetical protein

Products: NA

Alternate protein names: ORF 480 [H]

Number of amino acids: Translated: 514; Mature: 514

Protein sequence:

>514_residues
MMHDCCPKCGIYIAFHRQDLGKPNLQRFTELKYCWNCHYDLSNSPCENVIFFNDEIRLQWQNWLNQIANLDYLSNTIRSR
IKNIAPQIKIAKRLSHKAAEMKFSPLQGSFPNADYPLSVVQIDHTKLDIILVDDIYRKPIGRPWITLAIDVFSRMVTGFY
VSFDPPSALSTGLCLAHSILSKESWLAKHGVKGRWPVWGLPRKIHLDNAKEFRGKVLEKACKQYGIEIEWRPVARPHFGG
HIERLLGTILDEVHGLTGTTFANTQQRKDYASESKAALTLTEFETWLTLFICDVYHQRTHSGLGISPLAKWKSGVLGDDV
SLGTGLPDKVVDETLLRLTFMPFEMRTVQQYGVVIHKITYWHDVLRPWIAATNPTNPRQARQFIFRIDPRDLSVIWFYDP
DLSMYFPIPYRNSSNPVISIWELREIQRQLKNEQKQNIDENMIFTAYGRMRELEQQAQGKTKAIRRAQQRRQLDQRTRAS
LPMSQIDSRNIISSENEENMFDDIQPFDDLDDLS

Sequences:

>Translated_514_residues
MMHDCCPKCGIYIAFHRQDLGKPNLQRFTELKYCWNCHYDLSNSPCENVIFFNDEIRLQWQNWLNQIANLDYLSNTIRSR
IKNIAPQIKIAKRLSHKAAEMKFSPLQGSFPNADYPLSVVQIDHTKLDIILVDDIYRKPIGRPWITLAIDVFSRMVTGFY
VSFDPPSALSTGLCLAHSILSKESWLAKHGVKGRWPVWGLPRKIHLDNAKEFRGKVLEKACKQYGIEIEWRPVARPHFGG
HIERLLGTILDEVHGLTGTTFANTQQRKDYASESKAALTLTEFETWLTLFICDVYHQRTHSGLGISPLAKWKSGVLGDDV
SLGTGLPDKVVDETLLRLTFMPFEMRTVQQYGVVIHKITYWHDVLRPWIAATNPTNPRQARQFIFRIDPRDLSVIWFYDP
DLSMYFPIPYRNSSNPVISIWELREIQRQLKNEQKQNIDENMIFTAYGRMRELEQQAQGKTKAIRRAQQRRQLDQRTRAS
LPMSQIDSRNIISSENEENMFDDIQPFDDLDDLS
>Mature_514_residues
MMHDCCPKCGIYIAFHRQDLGKPNLQRFTELKYCWNCHYDLSNSPCENVIFFNDEIRLQWQNWLNQIANLDYLSNTIRSR
IKNIAPQIKIAKRLSHKAAEMKFSPLQGSFPNADYPLSVVQIDHTKLDIILVDDIYRKPIGRPWITLAIDVFSRMVTGFY
VSFDPPSALSTGLCLAHSILSKESWLAKHGVKGRWPVWGLPRKIHLDNAKEFRGKVLEKACKQYGIEIEWRPVARPHFGG
HIERLLGTILDEVHGLTGTTFANTQQRKDYASESKAALTLTEFETWLTLFICDVYHQRTHSGLGISPLAKWKSGVLGDDV
SLGTGLPDKVVDETLLRLTFMPFEMRTVQQYGVVIHKITYWHDVLRPWIAATNPTNPRQARQFIFRIDPRDLSVIWFYDP
DLSMYFPIPYRNSSNPVISIWELREIQRQLKNEQKQNIDENMIFTAYGRMRELEQQAQGKTKAIRRAQQRRQLDQRTRAS
LPMSQIDSRNIISSENEENMFDDIQPFDDLDDLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337
- InterPro:   IPR015378
- InterPro:   IPR009004 [H]

Pfam domain/function: PF09299 Mu-transpos_C; PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 59687; Mature: 59687

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: PS50994 INTEGRASE ; PS00290 IG_MHC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMHDCCPKCGIYIAFHRQDLGKPNLQRFTELKYCWNCHYDLSNSPCENVIFFNDEIRLQW
CCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHEEECCCCCCCCCCCEEEECCCEEEHH
QNWLNQIANLDYLSNTIRSRIKNIAPQIKIAKRLSHKAAEMKFSPLQGSFPNADYPLSVV
HHHHHHHHCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCEECCCCCCCCCCCCCEEEE
QIDHTKLDIILVDDIYRKPIGRPWITLAIDVFSRMVTGFYVSFDPPSALSTGLCLAHSIL
EECCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHCEEEECCCCHHHHHHHHHHHHHH
SKESWLAKHGVKGRWPVWGLPRKIHLDNAKEFRGKVLEKACKQYGIEIEWRPVARPHFGG
HHHHHHHHCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCH
HIERLLGTILDEVHGLTGTTFANTQQRKDYASESKAALTLTEFETWLTLFICDVYHQRTH
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHC
SGLGISPLAKWKSGVLGDDVSLGTGLPDKVVDETLLRLTFMPFEMRTVQQYGVVIHKITY
CCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
WHDVLRPWIAATNPTNPRQARQFIFRIDPRDLSVIWFYDPDLSMYFPIPYRNSSNPVISI
HHHHHHHHHHCCCCCCHHHHHHHHEEECCCCEEEEEEECCCCCEEECCCCCCCCCCEEEH
WELREIQRQLKNEQKQNIDENMIFTAYGRMRELEQQAQGKTKAIRRAQQRRQLDQRTRAS
HHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC
LPMSQIDSRNIISSENEENMFDDIQPFDDLDDLS
CCHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCC
>Mature Secondary Structure
MMHDCCPKCGIYIAFHRQDLGKPNLQRFTELKYCWNCHYDLSNSPCENVIFFNDEIRLQW
CCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHEEECCCCCCCCCCCEEEECCCEEEHH
QNWLNQIANLDYLSNTIRSRIKNIAPQIKIAKRLSHKAAEMKFSPLQGSFPNADYPLSVV
HHHHHHHHCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCEECCCCCCCCCCCCCEEEE
QIDHTKLDIILVDDIYRKPIGRPWITLAIDVFSRMVTGFYVSFDPPSALSTGLCLAHSIL
EECCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHCEEEECCCCHHHHHHHHHHHHHH
SKESWLAKHGVKGRWPVWGLPRKIHLDNAKEFRGKVLEKACKQYGIEIEWRPVARPHFGG
HHHHHHHHCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCH
HIERLLGTILDEVHGLTGTTFANTQQRKDYASESKAALTLTEFETWLTLFICDVYHQRTH
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHC
SGLGISPLAKWKSGVLGDDVSLGTGLPDKVVDETLLRLTFMPFEMRTVQQYGVVIHKITY
CCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
WHDVLRPWIAATNPTNPRQARQFIFRIDPRDLSVIWFYDPDLSMYFPIPYRNSSNPVISI
HHHHHHHHHHCCCCCCHHHHHHHHEEECCCCEEEEEEECCCCCEEECCCCCCCCCCEEEH
WELREIQRQLKNEQKQNIDENMIFTAYGRMRELEQQAQGKTKAIRRAQQRRQLDQRTRAS
HHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC
LPMSQIDSRNIISSENEENMFDDIQPFDDLDDLS
CCHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2170815 [H]