Click here to switch to the map view.

The map label for this gene is gam

Identifier: 161869971

GI number: 161869971

Start: 1004628

End: 1005146

Strand: Direct

Name: gam

Synonym: NMCC_1004

Alternate gene names: NA

Gene position: 1004628-1005146 (Clockwise)

Preceding gene: 161869970

Following gene: 161869978

Centisome position: 46.65

GC content: 52.22

Gene sequence:

>519_bases
ATGGCTAAAACCCGAATCAAACAGCCCGCCATCGAAGCGGCACAAGACAAAACGGAAGTTACTGCATTTATCCGCCAAAT
CGGCGACTTGCAGCGCGAAGTCAAACGCCTGGAAACCGAAGCCGGAGACAAAAAAGCGGCTATCGAAGAAGAATATGCCG
CCAAAGCCGCGCCGATGTGTGCCGAAATCATGAGCCTGACCGAACGTGTGGCCGCCTACTGCGAAGCGCATAAGGACGAG
CTGACGGAAAATGGTAAAACCAAAACCGTGGACTTTACCACCGGCCTGATTAAATGGCGCATCCGTCCGCCATCTGTCAA
GGTAACGGGCGTGGCCGCCGTCCTGGCGTGGCTCTCGGAAAAATCCGCCTTTGCCGAGTTTGTCCGCACTAAAAAGGAAA
TCGACAAAGACACCATCCTGAATCAAAAAGAGTGTTTTTCAGACGGCCAAGTTCCGGGGATTAAGATTGTGAGCGGCGTG
GAGGATTTTGTGATTGAGCCGAGCGAACAAATTCTATAA

Upstream 100 bases:

>100_bases
ATGCCCAAAAAGATCGTCGCAAATTCGTAATCGACGCATCAAATCAATTGGCTGCAATCCAGACATATCAAAAAATCTTC
AATTAAGGAAGGAAGAGAAA

Downstream 100 bases:

>100_bases
AATCAACAGCCTGATTTCAATTCAGTGTGTTGAAACGTGATTGAGCCTACGGAGCAGGAGCTTGCCTAGCCGGTTCAAAT
AGGCTTTAACCCATGATTTA

Product: host-nuclease inhibitor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MAKTRIKQPAIEAAQDKTEVTAFIRQIGDLQREVKRLETEAGDKKAAIEEEYAAKAAPMCAEIMSLTERVAAYCEAHKDE
LTENGKTKTVDFTTGLIKWRIRPPSVKVTGVAAVLAWLSEKSAFAEFVRTKKEIDKDTILNQKECFSDGQVPGIKIVSGV
EDFVIEPSEQIL

Sequences:

>Translated_172_residues
MAKTRIKQPAIEAAQDKTEVTAFIRQIGDLQREVKRLETEAGDKKAAIEEEYAAKAAPMCAEIMSLTERVAAYCEAHKDE
LTENGKTKTVDFTTGLIKWRIRPPSVKVTGVAAVLAWLSEKSAFAEFVRTKKEIDKDTILNQKECFSDGQVPGIKIVSGV
EDFVIEPSEQIL
>Mature_171_residues
AKTRIKQPAIEAAQDKTEVTAFIRQIGDLQREVKRLETEAGDKKAAIEEEYAAKAAPMCAEIMSLTERVAAYCEAHKDEL
TENGKTKTVDFTTGLIKWRIRPPSVKVTGVAAVLAWLSEKSAFAEFVRTKKEIDKDTILNQKECFSDGQVPGIKIVSGVE
DFVIEPSEQIL

Specific function: Protects linear double stranded DNA of Mu genome from exonuclease degradation [H]

COG id: COG4396

COG function: function code R; Mu-like prophage host-nuclease inhibitor protein Gam

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To phage Mu protein gam [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009951 [H]

Pfam domain/function: PF07352 Phage_Mu_Gam [H]

EC number: NA

Molecular weight: Translated: 19087; Mature: 18956

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKTRIKQPAIEAAQDKTEVTAFIRQIGDLQREVKRLETEAGDKKAAIEEEYAAKAAPMC
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
AEIMSLTERVAAYCEAHKDELTENGKTKTVDFTTGLIKWRIRPPSVKVTGVAAVLAWLSE
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEEECCCCEEHHHHHHHHHHHHH
KSAFAEFVRTKKEIDKDTILNQKECFSDGQVPGIKIVSGVEDFVIEPSEQIL
HHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHCHHHHHCCCHHHCC
>Mature Secondary Structure 
AKTRIKQPAIEAAQDKTEVTAFIRQIGDLQREVKRLETEAGDKKAAIEEEYAAKAAPMC
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
AEIMSLTERVAAYCEAHKDELTENGKTKTVDFTTGLIKWRIRPPSVKVTGVAAVLAWLSE
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEEECCCCEEHHHHHHHHHHHHH
KSAFAEFVRTKKEIDKDTILNQKECFSDGQVPGIKIVSGVEDFVIEPSEQIL
HHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHCHHHHHCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]