Click here to switch to the map view.

The map label for this gene is atpD [H]

Identifier: 161869279

GI number: 161869279

Start: 291067

End: 292464

Strand: Direct

Name: atpD [H]

Synonym: NMCC_0284

Alternate gene names: 161869279

Gene position: 291067-292464 (Clockwise)

Preceding gene: 161869278

Following gene: 161869280

Centisome position: 13.52

GC content: 52.5

Gene sequence:

>1398_bases
ATGAGCCAAGGCAAAATCGTACAAATTATCGGTGCGGTTGTTGACGTGGAATTTCCACGCGACATGATTCCGCGCGTTTA
CGACGCTTTGAAATTAGACGAAAACGGTCTGACTTTGGAAGTCCAACAGCTTTTGGGCGACGGCGTAGTCCGTACCATTG
CGATGGGCAGCTCGGACGGTTTGAAACGCGGCATGACTGTGAGCAATACCGGTGCGCCCATTACTGTGCCGGTAGGTAAA
GGTACGTTGGGACGCATTGTCGATGTATTGGGAACGCCTGTTGACGAAGCAGGTCCGATTGATACCGACAAGAGCCGTGC
CATCCACCAAGCCGCCCCTAAGTTTGACGAACTGTCTTCCACAACCGAATTGCTCGAAACGGGCATTAAAGTGATTGACT
TGCTGTGTCCGTTTGCCAAAGGCGGTAAAGTAGGTCTGTTCGGCGGTGCCGGTGTGGGTAAAACCGTGAACATGATGGAA
TTGATCAACAACATCGCCAAAGCGCACAGCGGCTTGTCCGTGTTCGCAGGCGTGGGTGAGCGTACCCGCGAAGGTAACGA
CTTCTACCACGAGATGAAAGATTCCAACGTATTGGATAAAGTGGCAATGGTTTACGGTCAGATGAACGAACCTCCGGGCA
ACCGTTTGCGCGTCGCATTGACCGGTTTGACCATGGCGGAATACTTCCGTGACGAAAAAGACGAAAACGGCAAAGGCCGC
GACGTATTGTTCTTCGTGGACAACATCTACCGTTACACCCTGGCTGGTACCGAAGTATCCGCATTGTTGGGCCGTATGCC
TTCTGCAGTGGGCTACCAACCGACATTGGCTGAAGAAATGGGTCGTTTGCAGGAGCGTATTACCTCTACCCAAACCGGTT
CTATTACTTCCATCCAAGCCGTATATGTACCTGCGGACGACTTGACCGACCCGTCTCCGGCAACAACGTTCGCCCACTTG
GACGCAACCGTCGTATTGAGCCGTGATATTGCCTCTTTGGGTATTTACCCGGCAGTTGACCCTCTTGACTCTACTTCACG
CCAACTGGATCCGATGGTCTTGGGTCAAGAACACTACGACGTGGCGCGCGGCGTACAGTCCACCCTGCAGAAATACAAAG
AATTGCGCGACATCATCGCCATCTTGGGTATGGACGAATTGTCTGACGAAGACAAACTGACCGTAATGCGTGCGCGTAAA
ATCCAACGCTTCCTGTCCCAACCGTTCCACGTTGCCGAAGTGTTTACAGGTTCTCCGGGCAAATATGTCGCCCTGCGCGA
TACCATTGCCGGCTTCAAAGCCATCTTGAACGGCGAATACGACCATCTGCCCGAGCAGGCATTCTATATGGTCGGCAGCA
TCGAAGAAGCGGTTGAGAAAGCGAAAACCTTAAACTGA

Upstream 100 bases:

>100_bases
TCGCGTCAAGCTGCGATTACCACGGAATTGTCAGAAATTGTAGCAGGTGCGGCGGCTGTCTGATGCCGTCTGAATCCTGT
ACAGAAATTAGGATACGATA

Downstream 100 bases:

>100_bases
GGAGGTCGGCATGAGCATCATGGAAGTTGAGGTGGTAAGTAGCGAGCAGAAAATCTATTCAGGCGAGGCAACATTTATCG
TTGTTCCGACTGTACAGGGC

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 465; Mature: 464

Protein sequence:

>465_residues
MSQGKIVQIIGAVVDVEFPRDMIPRVYDALKLDENGLTLEVQQLLGDGVVRTIAMGSSDGLKRGMTVSNTGAPITVPVGK
GTLGRIVDVLGTPVDEAGPIDTDKSRAIHQAAPKFDELSSTTELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMME
LINNIAKAHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDEKDENGKGR
DVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTQTGSITSIQAVYVPADDLTDPSPATTFAHL
DATVVLSRDIASLGIYPAVDPLDSTSRQLDPMVLGQEHYDVARGVQSTLQKYKELRDIIAILGMDELSDEDKLTVMRARK
IQRFLSQPFHVAEVFTGSPGKYVALRDTIAGFKAILNGEYDHLPEQAFYMVGSIEEAVEKAKTLN

Sequences:

>Translated_465_residues
MSQGKIVQIIGAVVDVEFPRDMIPRVYDALKLDENGLTLEVQQLLGDGVVRTIAMGSSDGLKRGMTVSNTGAPITVPVGK
GTLGRIVDVLGTPVDEAGPIDTDKSRAIHQAAPKFDELSSTTELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMME
LINNIAKAHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDEKDENGKGR
DVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTQTGSITSIQAVYVPADDLTDPSPATTFAHL
DATVVLSRDIASLGIYPAVDPLDSTSRQLDPMVLGQEHYDVARGVQSTLQKYKELRDIIAILGMDELSDEDKLTVMRARK
IQRFLSQPFHVAEVFTGSPGKYVALRDTIAGFKAILNGEYDHLPEQAFYMVGSIEEAVEKAKTLN
>Mature_464_residues
SQGKIVQIIGAVVDVEFPRDMIPRVYDALKLDENGLTLEVQQLLGDGVVRTIAMGSSDGLKRGMTVSNTGAPITVPVGKG
TLGRIVDVLGTPVDEAGPIDTDKSRAIHQAAPKFDELSSTTELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMEL
INNIAKAHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDEKDENGKGRD
VLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTQTGSITSIQAVYVPADDLTDPSPATTFAHLD
ATVVLSRDIASLGIYPAVDPLDSTSRQLDPMVLGQEHYDVARGVQSTLQKYKELRDIIAILGMDELSDEDKLTVMRARKI
QRFLSQPFHVAEVFTGSPGKYVALRDTIAGFKAILNGEYDHLPEQAFYMVGSIEEAVEKAKTLN

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=471, Percent_Identity=69.2144373673036, Blast_Score=648, Evalue=0.0,
Organism=Homo sapiens, GI50345984, Length=405, Percent_Identity=25.4320987654321, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI4757810, Length=405, Percent_Identity=25.4320987654321, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI19913424, Length=326, Percent_Identity=26.9938650306748, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI19913426, Length=395, Percent_Identity=23.2911392405063, Blast_Score=100, Evalue=5e-21,
Organism=Homo sapiens, GI19913428, Length=406, Percent_Identity=23.8916256157635, Blast_Score=99, Evalue=1e-20,
Organism=Escherichia coli, GI1790170, Length=467, Percent_Identity=81.7987152034261, Blast_Score=770, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=330, Percent_Identity=30.3030303030303, Blast_Score=133, Evalue=3e-32,
Organism=Escherichia coli, GI1790172, Length=426, Percent_Identity=26.2910798122066, Blast_Score=132, Evalue=5e-32,
Organism=Caenorhabditis elegans, GI25144756, Length=471, Percent_Identity=66.8789808917197, Blast_Score=630, Evalue=0.0,
Organism=Caenorhabditis elegans, GI71988080, Length=337, Percent_Identity=25.2225519287834, Blast_Score=111, Evalue=9e-25,
Organism=Caenorhabditis elegans, GI71988063, Length=337, Percent_Identity=25.2225519287834, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17565854, Length=329, Percent_Identity=27.0516717325228, Blast_Score=108, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI17510931, Length=359, Percent_Identity=24.7910863509749, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17570191, Length=410, Percent_Identity=23.4146341463415, Blast_Score=99, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI71988074, Length=369, Percent_Identity=22.2222222222222, Blast_Score=82, Evalue=4e-16,
Organism=Saccharomyces cerevisiae, GI6322581, Length=462, Percent_Identity=67.7489177489177, Blast_Score=634, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319370, Length=377, Percent_Identity=26.525198938992, Blast_Score=116, Evalue=9e-27,
Organism=Saccharomyces cerevisiae, GI6319603, Length=393, Percent_Identity=26.2086513994911, Blast_Score=114, Evalue=2e-26,
Organism=Saccharomyces cerevisiae, GI6320016, Length=300, Percent_Identity=25.3333333333333, Blast_Score=77, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24638766, Length=470, Percent_Identity=69.7872340425532, Blast_Score=651, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=471, Percent_Identity=63.9065817409766, Blast_Score=596, Evalue=1e-170,
Organism=Drosophila melanogaster, GI20129479, Length=325, Percent_Identity=27.6923076923077, Blast_Score=109, Evalue=5e-24,
Organism=Drosophila melanogaster, GI24658560, Length=407, Percent_Identity=25.5528255528256, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24583992, Length=328, Percent_Identity=26.8292682926829, Blast_Score=106, Evalue=4e-23,
Organism=Drosophila melanogaster, GI24583988, Length=328, Percent_Identity=26.5243902439024, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24583986, Length=328, Percent_Identity=26.5243902439024, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24583984, Length=328, Percent_Identity=26.5243902439024, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI281361666, Length=397, Percent_Identity=23.6775818639798, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24646341, Length=397, Percent_Identity=23.6775818639798, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI17136796, Length=397, Percent_Identity=23.6775818639798, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24638768, Length=91, Percent_Identity=53.8461538461538, Blast_Score=87, Evalue=2e-17,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 50422; Mature: 50291

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQGKIVQIIGAVVDVEFPRDMIPRVYDALKLDENGLTLEVQQLLGDGVVRTIAMGSSDG
CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHEECCCCCEEEHHHHHCCCHHHHEECCCCCC
LKRGMTVSNTGAPITVPVGKGTLGRIVDVLGTPVDEAGPIDTDKSRAIHQAAPKFDELSS
HHCCCEEECCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHH
TTELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE
HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEECCCCC
RTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDEKDENGKGR
CCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCCCCC
DVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTQTGSITSIQA
EEEEEEECHHHEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEE
VYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDSTSRQLDPMVLGQEHYD
EEECCCCCCCCCCCCEEHHCCEEEEEEHHHHHHCCCCCCCCCCCHHHHCCCHHCCCHHHH
VARGVQSTLQKYKELRDIIAILGMDELSDEDKLTVMRARKIQRFLSQPFHVAEVFTGSPG
HHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCCEEEHHEECCCC
KYVALRDTIAGFKAILNGEYDHLPEQAFYMVGSIEEAVEKAKTLN
CEEEEHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SQGKIVQIIGAVVDVEFPRDMIPRVYDALKLDENGLTLEVQQLLGDGVVRTIAMGSSDG
CCCHHHHHHHHHHCCCCCHHHHHHHHHHHEECCCCCEEEHHHHHCCCHHHHEECCCCCC
LKRGMTVSNTGAPITVPVGKGTLGRIVDVLGTPVDEAGPIDTDKSRAIHQAAPKFDELSS
HHCCCEEECCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHH
TTELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE
HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEECCCCC
RTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDEKDENGKGR
CCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCCCCC
DVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTQTGSITSIQA
EEEEEEECHHHEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEE
VYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDSTSRQLDPMVLGQEHYD
EEECCCCCCCCCCCCEEHHCCEEEEEEHHHHHHCCCCCCCCCCCHHHHCCCHHCCCHHHH
VARGVQSTLQKYKELRDIIAILGMDELSDEDKLTVMRARKIQRFLSQPFHVAEVFTGSPG
HHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCCEEEHHEECCCC
KYVALRDTIAGFKAILNGEYDHLPEQAFYMVGSIEEAVEKAKTLN
CEEEEHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 14500782 [H]