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The map label for this gene is ymdB [C]

Identifier: 161621800

GI number: 161621800

Start: 454792

End: 455307

Strand: Reverse

Name: ymdB [C]

Synonym: PPA0410

Alternate gene names: 161621800

Gene position: 455307-454792 (Counterclockwise)

Preceding gene: 50841896

Following gene: 50841889

Centisome position: 17.78

GC content: 62.6

Gene sequence:

>516_bases
ATGGCTGACATCACGATCCTTCGAGCAGACATCACCACCCTCGACGTCGATGCTGTCGTCAACGCGGCAAACCGTCAGTT
GGCTGGCGGCGGCGGGGTTGATGGAGCCATCCACCGGGCCGCTGGACCAGAACTGTCACAGGCATGCCGGAAGCTACGCG
AAACCACCCTGACCGATGGTCTGCCCACCGGTCAGTCGGTAGCCACCACTGCCGGAAAGATGCCCGCGAAGTGGGTCATC
CACACCGTCGGCCCGGTATGGGCTAAGACCATCGACAAGTCTGACCAGCTCGCCTCCTGCTATCGCACCTCTCTGCACGT
GGCCGACGAGATCGGCGCGCGAACCATTGCTTTTCCGACCATCTCTGCCGGGGTCTACGGCTACCCGATGGACGAGGCGA
CTCGGATCGCCGTCGAGACCTGCCGACAGACCGTCACCAAGGTAGACACGATTTACCTCGTTGCGTTCAATGCCGAGGCC
GAGGCCGGTTATCGAGCTGCCCTCGGAGAGGAGTGA

Upstream 100 bases:

>100_bases
CGACACCGCTACAGCATTACTTGCCAACTCTCGCGCGAGCATCGCGGTCACACCAGACGATTCCGCGGAGGGTGATCGCG
GGTCATGCACAATAGGGGCC

Downstream 100 bases:

>100_bases
TCCGGGTATTCGGGCGAGGACGCCGACAATTTAGTTAGCTAGCTCGGTAAGGATGCGTTCCAGCACAACAGCGTGATTGA
CCTCGCGATCACCAGCACCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MADITILRADITTLDVDAVVNAANRQLAGGGGVDGAIHRAAGPELSQACRKLRETTLTDGLPTGQSVATTAGKMPAKWVI
HTVGPVWAKTIDKSDQLASCYRTSLHVADEIGARTIAFPTISAGVYGYPMDEATRIAVETCRQTVTKVDTIYLVAFNAEA
EAGYRAALGEE

Sequences:

>Translated_171_residues
MADITILRADITTLDVDAVVNAANRQLAGGGGVDGAIHRAAGPELSQACRKLRETTLTDGLPTGQSVATTAGKMPAKWVI
HTVGPVWAKTIDKSDQLASCYRTSLHVADEIGARTIAFPTISAGVYGYPMDEATRIAVETCRQTVTKVDTIYLVAFNAEA
EAGYRAALGEE
>Mature_170_residues
ADITILRADITTLDVDAVVNAANRQLAGGGGVDGAIHRAAGPELSQACRKLRETTLTDGLPTGQSVATTAGKMPAKWVIH
TVGPVWAKTIDKSDQLASCYRTSLHVADEIGARTIAFPTISAGVYGYPMDEATRIAVETCRQTVTKVDTIYLVAFNAEAE
AGYRAALGEE

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI13569840, Length=171, Percent_Identity=45.6140350877193, Blast_Score=139, Evalue=8e-34,
Organism=Homo sapiens, GI117968621, Length=159, Percent_Identity=46.5408805031447, Blast_Score=139, Evalue=2e-33,
Organism=Homo sapiens, GI154813199, Length=150, Percent_Identity=34.6666666666667, Blast_Score=86, Evalue=1e-17,
Organism=Homo sapiens, GI226371718, Length=176, Percent_Identity=29.5454545454545, Blast_Score=86, Evalue=1e-17,
Organism=Homo sapiens, GI226371716, Length=176, Percent_Identity=29.5454545454545, Blast_Score=86, Evalue=1e-17,
Organism=Homo sapiens, GI226371714, Length=176, Percent_Identity=29.5454545454545, Blast_Score=86, Evalue=1e-17,
Organism=Homo sapiens, GI226371712, Length=176, Percent_Identity=29.5454545454545, Blast_Score=86, Evalue=1e-17,
Organism=Homo sapiens, GI226371710, Length=176, Percent_Identity=29.5454545454545, Blast_Score=86, Evalue=1e-17,
Organism=Homo sapiens, GI226371706, Length=176, Percent_Identity=29.5454545454545, Blast_Score=86, Evalue=1e-17,
Organism=Homo sapiens, GI207450721, Length=144, Percent_Identity=31.25, Blast_Score=85, Evalue=4e-17,
Organism=Homo sapiens, GI8923143, Length=144, Percent_Identity=31.25, Blast_Score=84, Evalue=4e-17,
Organism=Homo sapiens, GI20336746, Length=164, Percent_Identity=30.4878048780488, Blast_Score=81, Evalue=5e-16,
Organism=Escherichia coli, GI1787283, Length=172, Percent_Identity=45.9302325581395, Blast_Score=140, Evalue=3e-35,
Organism=Caenorhabditis elegans, GI17538214, Length=177, Percent_Identity=42.9378531073446, Blast_Score=124, Evalue=2e-29,
Organism=Drosophila melanogaster, GI24586353, Length=144, Percent_Identity=34.0277777777778, Blast_Score=74, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 18036; Mature: 17904

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADITILRADITTLDVDAVVNAANRQLAGGGGVDGAIHRAAGPELSQACRKLRETTLTDG
CCCEEEEECCCCEEHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCC
LPTGQSVATTAGKMPAKWVIHTVGPVWAKTIDKSDQLASCYRTSLHVADEIGARTIAFPT
CCCCCHHHHHCCCCCHHHHEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEECCE
ISAGVYGYPMDEATRIAVETCRQTVTKVDTIYLVAFNAEAEAGYRAALGEE
ECCCCCCCCCCHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCHHCCCCC
>Mature Secondary Structure 
ADITILRADITTLDVDAVVNAANRQLAGGGGVDGAIHRAAGPELSQACRKLRETTLTDG
CCEEEEECCCCEEHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCC
LPTGQSVATTAGKMPAKWVIHTVGPVWAKTIDKSDQLASCYRTSLHVADEIGARTIAFPT
CCCCCHHHHHCCCCCHHHHEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEECCE
ISAGVYGYPMDEATRIAVETCRQTVTKVDTIYLVAFNAEAEAGYRAALGEE
ECCCCCCCCCCHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12000953 [H]