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The map label for this gene is secY [H]

Identifier: 161611306

GI number: 161611306

Start: 557858

End: 559228

Strand: Direct

Name: secY [H]

Synonym: pc0430

Alternate gene names: 161611306

Gene position: 557858-559228 (Clockwise)

Preceding gene: 46446063

Following gene: 46446065

Centisome position: 23.1

GC content: 37.64

Gene sequence:

>1371_bases
ATGCTGAATGGATTAAGACGTGTTTTTCAAATACCTGAACTAAAGACGAAAATTCTTATAACGCTTCTTTTACTTGCTGT
TTGCAGACTTGGAAGTTTTATTCCAGTTCCTGGAATTAATGGAGAAGTTGCAGTTAGCTTTTTTAGACATGCGACCGGTG
GAAGTCAAAATCTTTTTCAGATGGTCGATATTTTTTCTGGTGGTGCTTTTTCTCAGATGACTGTGATTGCTCTTGGTGTA
ACACCTTACATCTCAGCATCCATCATTATGCAATTGCTAGTTGCCCTTGTTCCTAGCTTACAAAGAGATTTGCGTGAAAA
TGGTGATGCAGGAAAGAGAAAAATTAATCGTTGGACTCGTTTTTTGACGATTGTTCTTTCTTTCTTACAATCTGCTCTTT
TTGCTAAATATGCGCTTCAAATAAATCTTTCGCGACCTGGTATTGTGGCTGGGGAATTGCTAGATATTACTGCATTTGGA
CTACCATGGCTTTTTTATTTGATAACTATTGCTACAATGACAACTGGAACGATGTTTTTGATGTGGGTAGGAGAGCAAAT
TACTGAACGTGGAATTGGTAATGGAATCAGCCTTATCATCTGTTTAGGTATTTTATCTCAAATTCCTACAGCAATGGGAT
TAATTTTCCAACAACTTAATCTGGACTCGCAAGAACCTGGCCAAATGAATTTTTCAACAATTTTAGTTTTGATCAGCGTT
TTTGTTGTTGTGACACTGGCGACTATTTTAGTAATTCAGGGGCACAGAAGAATTCCCCTCCAGCATGCAAGACGTGTTGT
AGGTAGAAAAGAAGTTCAGGGAGGAAGTTCTTATATTCCTTTAAAAATTAATTATGCAGGTGTTATCCCTGTTATTTTTG
CCTCGTCTTTATTAATGTTTCCAGCCACGCTGGGAACTTTTGTTGGACGAGGAAATTGGTTAGGAGAAGTGGCTAATTGG
CTATCGCCTGGTGGGCCTTTATATCTTGTCCTATTTGTAGCTTTGATTATATTTTTTACATACTTTTGGACAGCAACACA
ATTTAGGCCAGATCAAATTGCATCTGATATGAAAAAAAATGGTGCATTTATCCCAGGTATAAGACAAGGCAAACCAACAC
AAGATTATTTAGAAAGTACAATGAATCGAGTGACTCTACTAGGAGCTGTATTCTTGGCATTAATTGCAATTTTACCAACA
ATGATTGGTAGTGTGCTGGGAGTGCCTCCAACTATTAGTTATTTCTTTGGTGGAACAGCTCTGTTGATTTTAGTTGGAGT
TGTTTTAGATACAATGAAACAAGTAGAATCGCACCTTTTAATGAAGCGATATGATGGTTTCATGAAGAAAGGGCGAGTAC
GCGGCCGTTAA

Upstream 100 bases:

>100_bases
ACTTTTTATAAGTGATTTTTTGAATGAATTTATATTCAAATCACGCAAAAGAAATTTTCTTTTGAGGAAAAAAAGCAACC
TATTACCCAAAGATATAGAG

Downstream 100 bases:

>100_bases
TAGTTAAGAAAGCTTTAAGCATTAGTGCAAAGCTTCAAAATATGATTAAATAAAGTTGCAATAAAAAGAAAAGTTCAATA
CAATTTACAGTTCGTTTTCG

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 456; Mature: 456

Protein sequence:

>456_residues
MLNGLRRVFQIPELKTKILITLLLLAVCRLGSFIPVPGINGEVAVSFFRHATGGSQNLFQMVDIFSGGAFSQMTVIALGV
TPYISASIIMQLLVALVPSLQRDLRENGDAGKRKINRWTRFLTIVLSFLQSALFAKYALQINLSRPGIVAGELLDITAFG
LPWLFYLITIATMTTGTMFLMWVGEQITERGIGNGISLIICLGILSQIPTAMGLIFQQLNLDSQEPGQMNFSTILVLISV
FVVVTLATILVIQGHRRIPLQHARRVVGRKEVQGGSSYIPLKINYAGVIPVIFASSLLMFPATLGTFVGRGNWLGEVANW
LSPGGPLYLVLFVALIIFFTYFWTATQFRPDQIASDMKKNGAFIPGIRQGKPTQDYLESTMNRVTLLGAVFLALIAILPT
MIGSVLGVPPTISYFFGGTALLILVGVVLDTMKQVESHLLMKRYDGFMKKGRVRGR

Sequences:

>Translated_456_residues
MLNGLRRVFQIPELKTKILITLLLLAVCRLGSFIPVPGINGEVAVSFFRHATGGSQNLFQMVDIFSGGAFSQMTVIALGV
TPYISASIIMQLLVALVPSLQRDLRENGDAGKRKINRWTRFLTIVLSFLQSALFAKYALQINLSRPGIVAGELLDITAFG
LPWLFYLITIATMTTGTMFLMWVGEQITERGIGNGISLIICLGILSQIPTAMGLIFQQLNLDSQEPGQMNFSTILVLISV
FVVVTLATILVIQGHRRIPLQHARRVVGRKEVQGGSSYIPLKINYAGVIPVIFASSLLMFPATLGTFVGRGNWLGEVANW
LSPGGPLYLVLFVALIIFFTYFWTATQFRPDQIASDMKKNGAFIPGIRQGKPTQDYLESTMNRVTLLGAVFLALIAILPT
MIGSVLGVPPTISYFFGGTALLILVGVVLDTMKQVESHLLMKRYDGFMKKGRVRGR
>Mature_456_residues
MLNGLRRVFQIPELKTKILITLLLLAVCRLGSFIPVPGINGEVAVSFFRHATGGSQNLFQMVDIFSGGAFSQMTVIALGV
TPYISASIIMQLLVALVPSLQRDLRENGDAGKRKINRWTRFLTIVLSFLQSALFAKYALQINLSRPGIVAGELLDITAFG
LPWLFYLITIATMTTGTMFLMWVGEQITERGIGNGISLIICLGILSQIPTAMGLIFQQLNLDSQEPGQMNFSTILVLISV
FVVVTLATILVIQGHRRIPLQHARRVVGRKEVQGGSSYIPLKINYAGVIPVIFASSLLMFPATLGTFVGRGNWLGEVANW
LSPGGPLYLVLFVALIIFFTYFWTATQFRPDQIASDMKKNGAFIPGIRQGKPTQDYLESTMNRVTLLGAVFLALIAILPT
MIGSVLGVPPTISYFFGGTALLILVGVVLDTMKQVESHLLMKRYDGFMKKGRVRGR

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=446, Percent_Identity=40.5829596412556, Blast_Score=308, Evalue=6e-85,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 50049; Mature: 50049

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2 ; PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNGLRRVFQIPELKTKILITLLLLAVCRLGSFIPVPGINGEVAVSFFRHATGGSQNLFQ
CCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHH
MVDIFSGGAFSQMTVIALGVTPYISASIIMQLLVALVPSLQRDLRENGDAGKRKINRWTR
HHHHHCCCCHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
FLTIVLSFLQSALFAKYALQINLSRPGIVAGELLDITAFGLPWLFYLITIATMTTGTMFL
HHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MWVGEQITERGIGNGISLIICLGILSQIPTAMGLIFQQLNLDSQEPGQMNFSTILVLISV
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
FVVVTLATILVIQGHRRIPLQHARRVVGRKEVQGGSSYIPLKINYAGVIPVIFASSLLMF
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHH
PATLGTFVGRGNWLGEVANWLSPGGPLYLVLFVALIIFFTYFWTATQFRPDQIASDMKKN
HHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
GAFIPGIRQGKPTQDYLESTMNRVTLLGAVFLALIAILPTMIGSVLGVPPTISYFFGGTA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LLILVGVVLDTMKQVESHLLMKRYDGFMKKGRVRGR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLNGLRRVFQIPELKTKILITLLLLAVCRLGSFIPVPGINGEVAVSFFRHATGGSQNLFQ
CCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHH
MVDIFSGGAFSQMTVIALGVTPYISASIIMQLLVALVPSLQRDLRENGDAGKRKINRWTR
HHHHHCCCCHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
FLTIVLSFLQSALFAKYALQINLSRPGIVAGELLDITAFGLPWLFYLITIATMTTGTMFL
HHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MWVGEQITERGIGNGISLIICLGILSQIPTAMGLIFQQLNLDSQEPGQMNFSTILVLISV
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
FVVVTLATILVIQGHRRIPLQHARRVVGRKEVQGGSSYIPLKINYAGVIPVIFASSLLMF
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHH
PATLGTFVGRGNWLGEVANWLSPGGPLYLVLFVALIIFFTYFWTATQFRPDQIASDMKKN
HHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
GAFIPGIRQGKPTQDYLESTMNRVTLLGAVFLALIAILPTMIGSVLGVPPTISYFFGGTA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LLILVGVVLDTMKQVESHLLMKRYDGFMKKGRVRGR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10684935 [H]