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The map label for this gene is cph2 [H]

Identifier: 161525286

GI number: 161525286

Start: 2326941

End: 2328776

Strand: Direct

Name: cph2 [H]

Synonym: Bmul_2116

Alternate gene names: 161525286

Gene position: 2326941-2328776 (Clockwise)

Preceding gene: 161525284

Following gene: 161525287

Centisome position: 67.48

GC content: 69.17

Gene sequence:

>1836_bases
ATGGAAGCCAACAGGAAACAGACGCCGCGCAAGGGCCCCTGGCGCAGCGCATTGCATACGCTGCGCCGCTTCGCCTGGTC
GGGCGGCGCGCTGATGCCTGCGCGCGCCGGCGCCCCGCGTCGCGACGATACCGTGCGCAACTGGCTGGAACAGACGGTCG
GCACGGTCGATTTCCTCGCCCACGTCGATCGCGAGCTGCGCTTCCTCTACGTATCGGAAGCGAGCCTGCGCTTCATCGGC
TATCACCGCGACTATCTGCACACGCTGACGCTGCGCGACCTGATCGCCGAACAGGATACCGCGGCGCTCGAAGACCTGCT
TGCGCGCGCCGCGCGCTCGGGGCAGGTCGAGAAGGCGACGATGAGCATCGTCAAGTCGCTGACCTACCCGCTCGACGTCG
AGCTGCGCGCGGTGAAGAGCCGCCACCACGGCGTCGAAGGCTTCGCGATCGCCGCGTTCGACATCTCGTCGTGGCGCGCG
CTCGAGGCGCGGCTCACGTACGAAATGCATCACGATCCGATGACGGGGCTCGACAATCTGTCGGCGCTCGTGCCCGCGCT
GATCCGCGCGCAGCAGACGGCCGACGACGAAGGCACGTGCGCGGCGCTGCTGCTGCTCGATCTCGACGATTACCAGCGGA
TCAACCGCGCGCTCGGCTACGACGCGGGCGACGCGCTGCTGCGCGAAACCGCCCGGCGGCTGCGCACGCTCGTCGCGCCC
GACGAACTGCTCGCGCGCGTCGCGAGCGACAAGTTCGCGGTCGTGCTCGCCGCGCCGGACCGCGCACGCGCGTGCGACGC
GGCGGACGCGCTCGCGCGCCGGCTGCAGGCCGCGGTGCGCGAGCCATACACGTACCACGGGCAACCGGTGCATCTTTCGG
CAAGCATCGGCATCGCGCTGTATCCGGACGAGCGCGCGGCGCCGCATCGCGCGCAGCACCACAGTCCGCTGCTGCGCCGC
GCCGATCACGCGCTCGCGCAGGCGAAGGCGTCGGGCGGCAATGCGCTCGCGTTCCATGCGCCCGTCGACGATCCGGCCGA
CGCCGAACGGCTGAAGCTCGAAGCCGATCTGTACGACGGCGTGCGCAACGGCGAATTCTCGCTGCATTTCCAGCCGATCA
CGCGCAGCCAATCGGGCGCGGTGGTCGGCGTCGAGGCGCTGATCCGCTGGCGCCATCCCGTTCACGGGCTCGTGCCGCCG
GCCACCTTCATTCCGCTCGCCGAATCGATCGGGCTCATCAACTATCTCGGCAACTGGGTGCTGAAGGCCGCCTGCATGCA
GCTCGTCGCGTGGGATCGGCAGGGGCTCGCGCTGCAATACGTCGCGGTCAACGTGTCGCCGCAGCAGTTCCGCGATCCGC
GCTTCACGCAAAGCGTGCGCGATGCGATCGCGCTGACCGGCATCGATCCGCGGCGCATCGTGCTCGAGATCACCGAAAGC
CTGCTGATGCACGATCCCGCGCATGCGAAGGGGCTGCTCGAGGAGCTGACCGAGCTCGGCATCCGCTTCGCGATCGACGA
TTTCGGCACCGGCTATTCGAGCCTCGCCTATCTGCAGCGCTTCCCGCTCGCGAAGCTGAAGATCGACCGCAGCTTCGTCG
AGAATCTGCTGACCTCGCGCAACGATCGCGCGATCGTGTCGGCGGTCGTCGGGCTCGCGCAGACGCTCGAGCTCGAACTC
GTCGCCGAAGGCGTCGAGACCGAAGCGCAGCGCGCCCTGCTGACCGAAATGGGCTGCAACCACATCCAGGGCTGGCTCGT
CTGTCAGGCGCTGCCGTCCGAGGAGCTCGCGCGCCGCTTCGCGGCGCAGCAGCTGCACCTGCACGCGGCGGCCTGA

Upstream 100 bases:

>100_bases
CGGCCCGCGCAGCGCGCCGGCCGGTCCGTTAAAGATTCCTCGCAGTCTGCCGTTATTCCTCCCGGACAACCGGTTCCAGC
CCTTCACGTCAGCGAGAAAC

Downstream 100 bases:

>100_bases
CGGGCCGGACGGATCGTATGTCAATTACCGAACGCCTGGCCCCGACCGCGCTGCTCGACAAGCTGTGGGCGCGGATGAAC
GAACGCGGCGACTTCCCGCT

Product: PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 611; Mature: 611

Protein sequence:

>611_residues
MEANRKQTPRKGPWRSALHTLRRFAWSGGALMPARAGAPRRDDTVRNWLEQTVGTVDFLAHVDRELRFLYVSEASLRFIG
YHRDYLHTLTLRDLIAEQDTAALEDLLARAARSGQVEKATMSIVKSLTYPLDVELRAVKSRHHGVEGFAIAAFDISSWRA
LEARLTYEMHHDPMTGLDNLSALVPALIRAQQTADDEGTCAALLLLDLDDYQRINRALGYDAGDALLRETARRLRTLVAP
DELLARVASDKFAVVLAAPDRARACDAADALARRLQAAVREPYTYHGQPVHLSASIGIALYPDERAAPHRAQHHSPLLRR
ADHALAQAKASGGNALAFHAPVDDPADAERLKLEADLYDGVRNGEFSLHFQPITRSQSGAVVGVEALIRWRHPVHGLVPP
ATFIPLAESIGLINYLGNWVLKAACMQLVAWDRQGLALQYVAVNVSPQQFRDPRFTQSVRDAIALTGIDPRRIVLEITES
LLMHDPAHAKGLLEELTELGIRFAIDDFGTGYSSLAYLQRFPLAKLKIDRSFVENLLTSRNDRAIVSAVVGLAQTLELEL
VAEGVETEAQRALLTEMGCNHIQGWLVCQALPSEELARRFAAQQLHLHAAA

Sequences:

>Translated_611_residues
MEANRKQTPRKGPWRSALHTLRRFAWSGGALMPARAGAPRRDDTVRNWLEQTVGTVDFLAHVDRELRFLYVSEASLRFIG
YHRDYLHTLTLRDLIAEQDTAALEDLLARAARSGQVEKATMSIVKSLTYPLDVELRAVKSRHHGVEGFAIAAFDISSWRA
LEARLTYEMHHDPMTGLDNLSALVPALIRAQQTADDEGTCAALLLLDLDDYQRINRALGYDAGDALLRETARRLRTLVAP
DELLARVASDKFAVVLAAPDRARACDAADALARRLQAAVREPYTYHGQPVHLSASIGIALYPDERAAPHRAQHHSPLLRR
ADHALAQAKASGGNALAFHAPVDDPADAERLKLEADLYDGVRNGEFSLHFQPITRSQSGAVVGVEALIRWRHPVHGLVPP
ATFIPLAESIGLINYLGNWVLKAACMQLVAWDRQGLALQYVAVNVSPQQFRDPRFTQSVRDAIALTGIDPRRIVLEITES
LLMHDPAHAKGLLEELTELGIRFAIDDFGTGYSSLAYLQRFPLAKLKIDRSFVENLLTSRNDRAIVSAVVGLAQTLELEL
VAEGVETEAQRALLTEMGCNHIQGWLVCQALPSEELARRFAAQQLHLHAAA
>Mature_611_residues
MEANRKQTPRKGPWRSALHTLRRFAWSGGALMPARAGAPRRDDTVRNWLEQTVGTVDFLAHVDRELRFLYVSEASLRFIG
YHRDYLHTLTLRDLIAEQDTAALEDLLARAARSGQVEKATMSIVKSLTYPLDVELRAVKSRHHGVEGFAIAAFDISSWRA
LEARLTYEMHHDPMTGLDNLSALVPALIRAQQTADDEGTCAALLLLDLDDYQRINRALGYDAGDALLRETARRLRTLVAP
DELLARVASDKFAVVLAAPDRARACDAADALARRLQAAVREPYTYHGQPVHLSASIGIALYPDERAAPHRAQHHSPLLRR
ADHALAQAKASGGNALAFHAPVDDPADAERLKLEADLYDGVRNGEFSLHFQPITRSQSGAVVGVEALIRWRHPVHGLVPP
ATFIPLAESIGLINYLGNWVLKAACMQLVAWDRQGLALQYVAVNVSPQQFRDPRFTQSVRDAIALTGIDPRRIVLEITES
LLMHDPAHAKGLLEELTELGIRFAIDDFGTGYSSLAYLQRFPLAKLKIDRSFVENLLTSRNDRAIVSAVVGLAQTLELEL
VAEGVETEAQRALLTEMGCNHIQGWLVCQALPSEELARRFAAQQLHLHAAA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=428, Percent_Identity=34.5794392523364, Blast_Score=264, Evalue=1e-71,
Organism=Escherichia coli, GI1787541, Length=447, Percent_Identity=32.662192393736, Blast_Score=241, Evalue=9e-65,
Organism=Escherichia coli, GI226510982, Length=425, Percent_Identity=30.8235294117647, Blast_Score=179, Evalue=3e-46,
Organism=Escherichia coli, GI87081743, Length=249, Percent_Identity=36.144578313253, Blast_Score=156, Evalue=3e-39,
Organism=Escherichia coli, GI1786507, Length=243, Percent_Identity=34.5679012345679, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1788502, Length=256, Percent_Identity=34.375, Blast_Score=143, Evalue=3e-35,
Organism=Escherichia coli, GI1790496, Length=230, Percent_Identity=33.4782608695652, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI87081980, Length=260, Percent_Identity=31.9230769230769, Blast_Score=129, Evalue=6e-31,
Organism=Escherichia coli, GI1787055, Length=231, Percent_Identity=32.4675324675325, Blast_Score=128, Evalue=1e-30,
Organism=Escherichia coli, GI1788849, Length=244, Percent_Identity=31.9672131147541, Blast_Score=123, Evalue=4e-29,
Organism=Escherichia coli, GI87081845, Length=248, Percent_Identity=32.258064516129, Blast_Score=118, Evalue=9e-28,
Organism=Escherichia coli, GI87082096, Length=432, Percent_Identity=25.9259259259259, Blast_Score=105, Evalue=9e-24,
Organism=Escherichia coli, GI1788381, Length=213, Percent_Identity=29.1079812206573, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI1787262, Length=179, Percent_Identity=27.3743016759777, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1787410, Length=258, Percent_Identity=24.4186046511628, Blast_Score=69, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 67581; Mature: 67581

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: PS50112 PAS ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEANRKQTPRKGPWRSALHTLRRFAWSGGALMPARAGAPRRDDTVRNWLEQTVGTVDFLA
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
HVDRELRFLYVSEASLRFIGYHRDYLHTLTLRDLIAEQDTAALEDLLARAARSGQVEKAT
HHCCCEEEEEEECCCEEEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHH
MSIVKSLTYPLDVELRAVKSRHHGVEGFAIAAFDISSWRALEARLTYEMHHDPMTGLDNL
HHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHEEEEECCCCCCCHHHH
SALVPALIRAQQTADDEGTCAALLLLDLDDYQRINRALGYDAGDALLRETARRLRTLVAP
HHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCH
DELLARVASDKFAVVLAAPDRARACDAADALARRLQAAVREPYTYHGQPVHLSASIGIAL
HHHHHHHCCCCEEEEEECCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECEEEE
YPDERAAPHRAQHHSPLLRRADHALAQAKASGGNALAFHAPVDDPADAERLKLEADLYDG
CCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHEEEEHHHHCC
VRNGEFSLHFQPITRSQSGAVVGVEALIRWRHPVHGLVPPATFIPLAESIGLINYLGNWV
CCCCCEEEEEEECCCCCCCCEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LKAACMQLVAWDRQGLALQYVAVNVSPQQFRDPRFTQSVRDAIALTGIDPRRIVLEITES
HHHHHHHHHHHCCCCCEEEEEEEECCHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
LLMHDPAHAKGLLEELTELGIRFAIDDFGTGYSSLAYLQRFPLAKLKIDRSFVENLLTSR
HHHCCCHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
NDRAIVSAVVGLAQTLELELVAEGVETEAQRALLTEMGCNHIQGWLVCQALPSEELARRF
CCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHCHHHEEECCCHHHHHHHH
AAQQLHLHAAA
HHHHHHHEECC
>Mature Secondary Structure
MEANRKQTPRKGPWRSALHTLRRFAWSGGALMPARAGAPRRDDTVRNWLEQTVGTVDFLA
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
HVDRELRFLYVSEASLRFIGYHRDYLHTLTLRDLIAEQDTAALEDLLARAARSGQVEKAT
HHCCCEEEEEEECCCEEEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHH
MSIVKSLTYPLDVELRAVKSRHHGVEGFAIAAFDISSWRALEARLTYEMHHDPMTGLDNL
HHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHEEEEECCCCCCCHHHH
SALVPALIRAQQTADDEGTCAALLLLDLDDYQRINRALGYDAGDALLRETARRLRTLVAP
HHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCH
DELLARVASDKFAVVLAAPDRARACDAADALARRLQAAVREPYTYHGQPVHLSASIGIAL
HHHHHHHCCCCEEEEEECCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECEEEE
YPDERAAPHRAQHHSPLLRRADHALAQAKASGGNALAFHAPVDDPADAERLKLEADLYDG
CCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHEEEEHHHHCC
VRNGEFSLHFQPITRSQSGAVVGVEALIRWRHPVHGLVPPATFIPLAESIGLINYLGNWV
CCCCCEEEEEEECCCCCCCCEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LKAACMQLVAWDRQGLALQYVAVNVSPQQFRDPRFTQSVRDAIALTGIDPRRIVLEITES
HHHHHHHHHHHCCCCCEEEEEEEECCHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
LLMHDPAHAKGLLEELTELGIRFAIDDFGTGYSSLAYLQRFPLAKLKIDRSFVENLLTSR
HHHCCCHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
NDRAIVSAVVGLAQTLELELVAEGVETEAQRALLTEMGCNHIQGWLVCQALPSEELARRF
CCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHCHHHEEECCCHHHHHHHH
AAQQLHLHAAA
HHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]