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The map label for this gene is pecT [H]

Identifier: 161525223

GI number: 161525223

Start: 2246465

End: 2247313

Strand: Direct

Name: pecT [H]

Synonym: Bmul_2053

Alternate gene names: 161525223

Gene position: 2246465-2247313 (Clockwise)

Preceding gene: 161525211

Following gene: 161525225

Centisome position: 65.14

GC content: 72.2

Gene sequence:

>849_bases
ATGCGTCCGTTACCGCCCGAGCTGCTGCGCAGCTTCGTCGCCGTCGCGCAGTCCGGCAGCTTCACCGCCGCGTCCGAGCG
CGTGAGCCTGTCGCAGTCGACGGTGAGCCAGCACATCCGCCGCCTGGAGGAGCTGCTCGACCGGCCGCTGTTCGAGCGCG
ACACGCGCAACGTGCGCCTGTCGCAGCACGGCGATGCGCTGCTGCGCTACGCAGTGCGGATTCTCGAGCTGATGGACGAG
GCCGTTACCTCGGTGTGCGGGCCGCCGCTGTCGGGCAAGGTGCGGCTCGCGATGTCGGAGGATTTCGCGTCCGCGCATCT
GACGGCCGCGCTCGCGAGTTTCGTGCAGCGCAACCCGGACGTCGAGCTCGCGATCGCGACGGGGCTCTCCGGCGACCTGT
TCGACGCGCTCGACGAAGGCCGGCACGATCTCGTGTTCGCGAAGCGGATCGCGGGCAGCCGGCGCGGCCGCGTGATCCGC
AGCGAGCCGCTGTACTGGTGCACGGGCCCCGATTCGCGGATCACCGGCCACGAGACCGTGCTGCCGCTCGCACTGCATCC
GGAGCCGAGCGTGTCGCGCCGCCGCGTGCTCGAATCGCTCGAAGCGGTCGGGCGGCCGTACCGGATCGCGGTCGTCAGCA
GCAGCATCGCGGTGTTGCGCGCGGCCGCGAGCGCGGGGCTCGGCGTCAGCGCGTTCGCCGGCTACGTGATTCCCGCCGGG
CTCGCGCGGCTCGATGCGGGGCTGCCGGAACTCGGCGAGCTCGAATACGTGATCGACCGGCCGGCGGCCGCGTCGCGCTC
GACGCTCGCGCTGGAAGCGACGCTGATCGCGGCCGCCGCGCAGTTGTAG

Upstream 100 bases:

>100_bases
GGGCGTCCGCCATGCGGGCCGACCGGCGCGTGAATCGATACTAGCGCCGCAAAATCCGGCCATTTATGAAGTTGTCGAAA
CCGATTCAGTGGATTTAGCA

Downstream 100 bases:

>100_bases
CGGGCGGTGTCGCATCGCAGCCGTCGCACGGCGGCCGTCGTGCGATCGGCAACGACGCGCCGCGCGCGCCGCTTCGCCGT
TACGGCAGGAAACTGCGGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MRPLPPELLRSFVAVAQSGSFTAASERVSLSQSTVSQHIRRLEELLDRPLFERDTRNVRLSQHGDALLRYAVRILELMDE
AVTSVCGPPLSGKVRLAMSEDFASAHLTAALASFVQRNPDVELAIATGLSGDLFDALDEGRHDLVFAKRIAGSRRGRVIR
SEPLYWCTGPDSRITGHETVLPLALHPEPSVSRRRVLESLEAVGRPYRIAVVSSSIAVLRAAASAGLGVSAFAGYVIPAG
LARLDAGLPELGELEYVIDRPAAASRSTLALEATLIAAAAQL

Sequences:

>Translated_282_residues
MRPLPPELLRSFVAVAQSGSFTAASERVSLSQSTVSQHIRRLEELLDRPLFERDTRNVRLSQHGDALLRYAVRILELMDE
AVTSVCGPPLSGKVRLAMSEDFASAHLTAALASFVQRNPDVELAIATGLSGDLFDALDEGRHDLVFAKRIAGSRRGRVIR
SEPLYWCTGPDSRITGHETVLPLALHPEPSVSRRRVLESLEAVGRPYRIAVVSSSIAVLRAAASAGLGVSAFAGYVIPAG
LARLDAGLPELGELEYVIDRPAAASRSTLALEATLIAAAAQL
>Mature_282_residues
MRPLPPELLRSFVAVAQSGSFTAASERVSLSQSTVSQHIRRLEELLDRPLFERDTRNVRLSQHGDALLRYAVRILELMDE
AVTSVCGPPLSGKVRLAMSEDFASAHLTAALASFVQRNPDVELAIATGLSGDLFDALDEGRHDLVFAKRIAGSRRGRVIR
SEPLYWCTGPDSRITGHETVLPLALHPEPSVSRRRVLESLEAVGRPYRIAVVSSSIAVLRAAASAGLGVSAFAGYVIPAG
LARLDAGLPELGELEYVIDRPAAASRSTLALEATLIAAAAQL

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=254, Percent_Identity=33.4645669291339, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1787806, Length=157, Percent_Identity=35.6687898089172, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1790208, Length=143, Percent_Identity=33.5664335664336, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786448, Length=144, Percent_Identity=31.9444444444444, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI157672245, Length=252, Percent_Identity=27.7777777777778, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787589, Length=190, Percent_Identity=30.5263157894737, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788748, Length=241, Percent_Identity=28.6307053941909, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790262, Length=142, Percent_Identity=30.2816901408451, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI87082132, Length=279, Percent_Identity=26.8817204301075, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787601, Length=147, Percent_Identity=29.2517006802721, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788706, Length=120, Percent_Identity=32.5, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 30265; Mature: 30265

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPLPPELLRSFVAVAQSGSFTAASERVSLSQSTVSQHIRRLEELLDRPLFERDTRNVRL
CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCEEE
SQHGDALLRYAVRILELMDEAVTSVCGPPLSGKVRLAMSEDFASAHLTAALASFVQRNPD
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCC
VELAIATGLSGDLFDALDEGRHDLVFAKRIAGSRRGRVIRSEPLYWCTGPDSRITGHETV
EEEEEECCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCEEECCCEEEECCCCCCCCCCCEE
LPLALHPEPSVSRRRVLESLEAVGRPYRIAVVSSSIAVLRAAASAGLGVSAFAGYVIPAG
EEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LARLDAGLPELGELEYVIDRPAAASRSTLALEATLIAAAAQL
HHHHHCCCCCCCCCHHEECCCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRPLPPELLRSFVAVAQSGSFTAASERVSLSQSTVSQHIRRLEELLDRPLFERDTRNVRL
CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCEEE
SQHGDALLRYAVRILELMDEAVTSVCGPPLSGKVRLAMSEDFASAHLTAALASFVQRNPD
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCC
VELAIATGLSGDLFDALDEGRHDLVFAKRIAGSRRGRVIRSEPLYWCTGPDSRITGHETV
EEEEEECCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCEEECCCEEEECCCCCCCCCCCEE
LPLALHPEPSVSRRRVLESLEAVGRPYRIAVVSSSIAVLRAAASAGLGVSAFAGYVIPAG
EEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LARLDAGLPELGELEYVIDRPAAASRSTLALEATLIAAAAQL
HHHHHCCCCCCCCCHHEECCCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]