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The map label for this gene is ycaN [H]

Identifier: 161525149

GI number: 161525149

Start: 2176303

End: 2177205

Strand: Direct

Name: ycaN [H]

Synonym: Bmul_1977

Alternate gene names: 161525149

Gene position: 2176303-2177205 (Clockwise)

Preceding gene: 161525147

Following gene: 161525150

Centisome position: 63.11

GC content: 68.44

Gene sequence:

>903_bases
ATGCAAGTCGATCTCGGCGATCTGAACGCGTTCGTTGCCGTGGCGCGGGCGAAGGGCTTCCGCGAAGCGGCGAGAACGAC
GGGCACGAGCGCGTCCGGTCTCAGCGAGGCCGTGCGTCGGCTCGAGACGCAACTCGGCGTGCGGCTGCTTCATCGCACGA
CGCGCAGCGTGGCGCCGACCGAGGCCGGACAGCGGCTGCTCGCGCGGCTGATGCCCGCGCTGAGCGAAGTCGAAGCCGCG
CTCGACGTCGTCAACAGCTTCCGCGAGCGGCCGGCCGGCACGTTGAAGCTCAATGTCCCGCTCAGTGCGGCGCGGCTCGT
GCTGCCGTCCATCGTCCCGCGCTTTCTCGCGGCGTATCCGGAGATACGGCTTGAGCTCGTCGTTGAGGAAAGCTTCGTCG
ACATTCTCGAAGTCGGCTGTGATGCGGGCATTCGCTACGACGAGCGCCTCGAGCAGGACATGATCGCGATCCCGATCGGG
CCGCGCTCGCAGCGGTTCGCCACCGCCGCCGCGCCCGAGTATCTCGACCGGCGCGGCCGCCCGAAGCACCCGAGCGAACT
GCTCGATCACGCGTGCCTGCGCGGACGGTTTGCCAGCGGCTCGATGCCGCTGTGGGAGTTCGAGCGCGACGGCAAAGTGG
TCCGCGTCGATCCGTCGGGCCCGCTCGTCGTGCAGATCGGCGGTGCCGTCGATCTCGTCGTCGAGGCCGCGCGCTCGGGG
CTCGGCATCGTGCATCTTTACGAGGAGTGGCTTCGTCCGCATCTCGACAGCGGTGCGCTCGAGCCAGTGCTCGAAGGCTG
GTGGCGGCCGTTCTCCGGCCCGTATCTGTACTACCCGGGGCGACGTCTCGTGCCGGCGCCGTTGCGGGCGTTTATCGATT
TCATCAAGGCAGAGGGCGAATAG

Upstream 100 bases:

>100_bases
AAGCTCCTCTGACGACGATGATCGAGTGCCGCAGGTTACGCCGCATCGCGCTGCGCGATAATCCGTCACAATCTGCACGA
CCTGTACGAAAGGACGAACA

Downstream 100 bases:

>100_bases
GACGGCGTGGTGAGCGGGCAAGGTCGTTGTGCGGCGTCGGAACGAGCCGATTCGACCGGCGGCAGGAGGATCGTCGCGGG
TCGATATGGCGCGTCGCGGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MQVDLGDLNAFVAVARAKGFREAARTTGTSASGLSEAVRRLETQLGVRLLHRTTRSVAPTEAGQRLLARLMPALSEVEAA
LDVVNSFRERPAGTLKLNVPLSAARLVLPSIVPRFLAAYPEIRLELVVEESFVDILEVGCDAGIRYDERLEQDMIAIPIG
PRSQRFATAAAPEYLDRRGRPKHPSELLDHACLRGRFASGSMPLWEFERDGKVVRVDPSGPLVVQIGGAVDLVVEAARSG
LGIVHLYEEWLRPHLDSGALEPVLEGWWRPFSGPYLYYPGRRLVPAPLRAFIDFIKAEGE

Sequences:

>Translated_300_residues
MQVDLGDLNAFVAVARAKGFREAARTTGTSASGLSEAVRRLETQLGVRLLHRTTRSVAPTEAGQRLLARLMPALSEVEAA
LDVVNSFRERPAGTLKLNVPLSAARLVLPSIVPRFLAAYPEIRLELVVEESFVDILEVGCDAGIRYDERLEQDMIAIPIG
PRSQRFATAAAPEYLDRRGRPKHPSELLDHACLRGRFASGSMPLWEFERDGKVVRVDPSGPLVVQIGGAVDLVVEAARSG
LGIVHLYEEWLRPHLDSGALEPVLEGWWRPFSGPYLYYPGRRLVPAPLRAFIDFIKAEGE
>Mature_300_residues
MQVDLGDLNAFVAVARAKGFREAARTTGTSASGLSEAVRRLETQLGVRLLHRTTRSVAPTEAGQRLLARLMPALSEVEAA
LDVVNSFRERPAGTLKLNVPLSAARLVLPSIVPRFLAAYPEIRLELVVEESFVDILEVGCDAGIRYDERLEQDMIAIPIG
PRSQRFATAAAPEYLDRRGRPKHPSELLDHACLRGRFASGSMPLWEFERDGKVVRVDPSGPLVVQIGGAVDLVVEAARSG
LGIVHLYEEWLRPHLDSGALEPVLEGWWRPFSGPYLYYPGRRLVPAPLRAFIDFIKAEGE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=297, Percent_Identity=41.4141414141414, Blast_Score=235, Evalue=3e-63,
Organism=Escherichia coli, GI1787589, Length=297, Percent_Identity=36.026936026936, Blast_Score=184, Evalue=4e-48,
Organism=Escherichia coli, GI1786401, Length=303, Percent_Identity=30.03300330033, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI87081978, Length=293, Percent_Identity=28.6689419795222, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1789440, Length=259, Percent_Identity=28.1853281853282, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI145693193, Length=289, Percent_Identity=30.1038062283737, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1789639, Length=292, Percent_Identity=27.0547945205479, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1790399, Length=141, Percent_Identity=31.9148936170213, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787601, Length=127, Percent_Identity=27.5590551181102, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788748, Length=126, Percent_Identity=34.1269841269841, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788481, Length=313, Percent_Identity=24.6006389776358, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI145693105, Length=220, Percent_Identity=23.6363636363636, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786448, Length=296, Percent_Identity=24.3243243243243, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787879, Length=148, Percent_Identity=33.1081081081081, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33064; Mature: 33064

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVDLGDLNAFVAVARAKGFREAARTTGTSASGLSEAVRRLETQLGVRLLHRTTRSVAPT
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
EAGQRLLARLMPALSEVEAALDVVNSFRERPAGTLKLNVPLSAARLVLPSIVPRFLAAYP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHCC
EIRLELVVEESFVDILEVGCDAGIRYDERLEQDMIAIPIGPRSQRFATAAAPEYLDRRGR
CCEEEEEEHHHHHHHHHHCCCCCCCHHHHHCCCEEEECCCCCCCHHHHHCCHHHHHHCCC
PKHPSELLDHACLRGRFASGSMPLWEFERDGKVVRVDPSGPLVVQIGGAVDLVVEAARSG
CCCHHHHHHHHHHHCCCCCCCCCCEEECCCCCEEEECCCCCEEEEECCHHHHHHHHHHCC
LGIVHLYEEWLRPHLDSGALEPVLEGWWRPFSGPYLYYPGRRLVPAPLRAFIDFIKAEGE
CCHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQVDLGDLNAFVAVARAKGFREAARTTGTSASGLSEAVRRLETQLGVRLLHRTTRSVAPT
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
EAGQRLLARLMPALSEVEAALDVVNSFRERPAGTLKLNVPLSAARLVLPSIVPRFLAAYP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHCC
EIRLELVVEESFVDILEVGCDAGIRYDERLEQDMIAIPIGPRSQRFATAAAPEYLDRRGR
CCEEEEEEHHHHHHHHHHCCCCCCCHHHHHCCCEEEECCCCCCCHHHHHCCHHHHHHCCC
PKHPSELLDHACLRGRFASGSMPLWEFERDGKVVRVDPSGPLVVQIGGAVDLVVEAARSG
CCCHHHHHHHHHHHCCCCCCCCCCEEECCCCCEEEECCCCCEEEEECCHHHHHHHHHHCC
LGIVHLYEEWLRPHLDSGALEPVLEGWWRPFSGPYLYYPGRRLVPAPLRAFIDFIKAEGE
CCHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]