| Definition | Burkholderia multivorans ATCC 17616 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010084 |
| Length | 3,448,466 |
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The map label for this gene is alaS [H]
Identifier: 161525078
GI number: 161525078
Start: 2083506
End: 2086130
Strand: Reverse
Name: alaS [H]
Synonym: Bmul_1906
Alternate gene names: 161525078
Gene position: 2086130-2083506 (Counterclockwise)
Preceding gene: 161525080
Following gene: 161525076
Centisome position: 60.49
GC content: 67.01
Gene sequence:
>2625_bases ATGAAAGCTGCCGAAATCCGCGAGAAATTTCTCAAATTCTTCGAATCGAAGGGCCACACGATCGTCCGCTCGTCGAGCCT CGTGCCCGGTAACGATCCCACGCTGATGTTCACGAACTCGGGGATGGTCCAGTTCAAGGACGTCTTCCTCGGCACCGACC GGCGTCCGTACACGCGCGCGACGACGGCGCAGCGCAGCGTGCGCGCGGGCGGCAAGCACAACGACCTCGAGAACGTCGGC TACACCGCGCGGCACCACACGTTCTTCGAGATGCTCGGCAATTTCTCGTTCGGCGACTACTTCAAGCACGACGCGATCCG CTTCGCGTGGGAGCTGCTGACCACGGTCTACATGCTGCCGAAGGACAAGCTGTGGGTCACCGTGTACCAGGAAGACGACG AGGCGTACGACATCTGGGCGAAGGAAGTCGGCGTGCCGACCGAGCGCATCATCCGGATCGGCGACAACAAGGGCGCGCGC TACGCGTCCGACAACTTCTGGACGATGGGCGACACGGGTCCGTGCGGTCCGTGTACCGAGATCTTCTACGATCACGGCCC GGAGGTGTGGGGCGGGCCGCCGGGGTCGCCGGAAGAAGACGGCGACCGCTACATCGAAATCTGGAACCTCGTGTTCATGC AGTTCAACCGCGACGCGCAGGGCAACATGACGCGCCTGCCGAAGCCGTGCGTCGATACCGGCATGGGCCTCGAGCGTCTC GCCGCGGTGCTGCAGCACGTGCACAGCAACTATGAGATCGATCTGTTCCAGAACCTGATCAAGGCCGCCGCGCGCGTGAC CGAAGTCAGCGATCTGAACAACAACTCGCTGAAGGTGATCGCCGATCACATCCGCGCCTGCGCGTTCCTGATCGTCGACG GCGTGATTCCGGGCAACGAAGGCCGCGGCTACGTGCTGCGCCGCATCGTGCGCCGCGCGATCCGCCACGGCTACAAGCTC GGCCGCAAGGGCGCGTTCTTCCACAAGCTGGTGGCCGATCTCGTCGCCGAGATGGGCGCCGCGTATCCGGAGCTGAAGGA AGCCGAGCAGCGCGTGACCGACGTGCTGCGTCAGGAAGAGGAGCGCTTCTTCGAAACGATCGAGCACGGCATGTCGATCC TCGAATCGGCGCTCGCCGATCTCGAGGCGAAGGGCGGCAAGGTGCTCGACGGCGAACTCGCGTTCAAGCTGCACGACACC TACGGCTTCCCGCTCGATCTGACGGCCGACGTCTGCCGCGAGCGCGGCGTGACGGTCGACGAGCCGGCGTTCGACGACGC GATGGCGCGTCAGCGCGAGCAGGCGCGCGCGGCCGGCAAGTTCAAGGCCGCGCAGGGCCTCGAATACACGGGCGCGAAGA CGACGTTCCACGGCTACGAGGAGATCGCGTTCGACGACGCGAAGGTCGTCGCGCTGTACGTCGACGGCTCGGCCGTCACC GAAGTGAAGGCCGGCCAGGATGCGGTCGTCGTGCTCGATCACACGCCGTTCTACGCGGAATCGGGCGGCCAGGTCGGCGA CCAGGGCGTGCTCGCGAACGCGTCGACGCGCTTCGCGGTCGCCGACACGCTGAAGGTGCAGGCCGACGTGATCGGCCACC ACGGCACGCTCGAGCAGGGCACGCTGAAGGTCGGCGACGTGCTGCGCGCGGAGATCGACGCGCAGCGCCGTGCGCGCACG CAGCGCAACCACTCGGCGACGCACCTGATGCATAAGGCCCTGCGCGAAGTGCTCGGCTCGCACGTGCAGCAGAAGGGCTC GCTCGTCGACGCGGACAAAACGCGTTTCGACTTCGCGCATAACGCGCCGCTGACCGACGACGAAATCCGTCGCGTCGAAC AGATCGTCAACGACGAGATCCTGGCCAACGCGCCGGGCATTGTCCGAGTGATGCCGTACGACGAAGCGGTGAAGGGCGGC GCGATGGCGCTGTTCGGCGAGAAGTACGGCGACGAAGTGCGCGTGCTCGACCTCGGTTTCTCGCGCGAACTCTGCGGCGG CACGCACGTGAGCCGCACCGGCGACATCGGGCTGTTCAAGATCGTGATGGAAGGCGGCGTCGCGGCCGGCATCCGTCGCG TCGAGGCGATCACCGGCGACAACGCCGTGCGCTACGTGCAGGAACTCGACGCGCGCGTGAACGAAGCGGCGGCCGCGCTG AAGGCGCAGCCTGCCGAGCTCACGCAGCGCATCGCGCAGGTGCAGGATCAGGTCAAGTCGCTCGAGAAGGAACTCGCGGC GCTGAAGTCGAAGCTCGCGTCGAGCCAGGGCGACGAGCTCGCGCAGCAGGCCGTCGAAGTCGGCGGCGTGCACGTGCTGG CCGCGACGCTCGACGGCGCCGATGCGAAGACGCTGCGCGAGACGGTCGACAAGCTGAAGGACAAGCTGAAGAGCGCGGCG ATCGTGCTCGCGGCGGTCGAGGGCGGCAAGGTCAGCCTGATCGCCGGCGTGACGGCCGAGGCGAGCAAGAAGGTCAAGGC CGGCGAGCTCGTGAACTTCGTCGCGCAGCAAGTCGGCGGCAAGGGCGGCGGCCGTCCCGACATGGCACAGGCGGGCGGCA CCGAACCGGCGAACCTGCCGGCCGCGCTCGCCGGCGTGAAGGGCTGGGTCGAAGCACGGCTCTGA
Upstream 100 bases:
>100_bases ATTCAATCCCGTATAATCGATCGTTTCCGAACCATGCCGCCGCGCGTCCGCAACGGCCGCCGGCGTTTGAAGCCGTCTTA GCAGACTGTCCCCGCACGCC
Downstream 100 bases:
>100_bases TCGCCCGAGCGCGCGGCCGCGCGGCGCCCGCCGCGGTGCCGCGCTTCGCCGGCGACACGCAGGCTCACGCAAGCAAACGA AACGCCCCGATCGGCGCAGG
Product: alanyl-tRNA synthetase
Products: NA
Alternate protein names: Alanine--tRNA ligase; AlaRS [H]
Number of amino acids: Translated: 874; Mature: 874
Protein sequence:
>874_residues MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDRRPYTRATTAQRSVRAGGKHNDLENVG YTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYMLPKDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGAR YASDNFWTMGDTGPCGPCTEIFYDHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERL AAVLQHVHSNYEIDLFQNLIKAAARVTEVSDLNNNSLKVIADHIRACAFLIVDGVIPGNEGRGYVLRRIVRRAIRHGYKL GRKGAFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQEEERFFETIEHGMSILESALADLEAKGGKVLDGELAFKLHDT YGFPLDLTADVCRERGVTVDEPAFDDAMARQREQARAAGKFKAAQGLEYTGAKTTFHGYEEIAFDDAKVVALYVDGSAVT EVKAGQDAVVVLDHTPFYAESGGQVGDQGVLANASTRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRART QRNHSATHLMHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEQIVNDEILANAPGIVRVMPYDEAVKGG AMALFGEKYGDEVRVLDLGFSRELCGGTHVSRTGDIGLFKIVMEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAAL KAQPAELTQRIAQVQDQVKSLEKELAALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAA IVLAAVEGGKVSLIAGVTAEASKKVKAGELVNFVAQQVGGKGGGRPDMAQAGGTEPANLPAALAGVKGWVEARL
Sequences:
>Translated_874_residues MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDRRPYTRATTAQRSVRAGGKHNDLENVG YTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYMLPKDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGAR YASDNFWTMGDTGPCGPCTEIFYDHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERL AAVLQHVHSNYEIDLFQNLIKAAARVTEVSDLNNNSLKVIADHIRACAFLIVDGVIPGNEGRGYVLRRIVRRAIRHGYKL GRKGAFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQEEERFFETIEHGMSILESALADLEAKGGKVLDGELAFKLHDT YGFPLDLTADVCRERGVTVDEPAFDDAMARQREQARAAGKFKAAQGLEYTGAKTTFHGYEEIAFDDAKVVALYVDGSAVT EVKAGQDAVVVLDHTPFYAESGGQVGDQGVLANASTRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRART QRNHSATHLMHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEQIVNDEILANAPGIVRVMPYDEAVKGG AMALFGEKYGDEVRVLDLGFSRELCGGTHVSRTGDIGLFKIVMEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAAL KAQPAELTQRIAQVQDQVKSLEKELAALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAA IVLAAVEGGKVSLIAGVTAEASKKVKAGELVNFVAQQVGGKGGGRPDMAQAGGTEPANLPAALAGVKGWVEARL >Mature_874_residues MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDRRPYTRATTAQRSVRAGGKHNDLENVG YTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYMLPKDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGAR YASDNFWTMGDTGPCGPCTEIFYDHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERL AAVLQHVHSNYEIDLFQNLIKAAARVTEVSDLNNNSLKVIADHIRACAFLIVDGVIPGNEGRGYVLRRIVRRAIRHGYKL GRKGAFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQEEERFFETIEHGMSILESALADLEAKGGKVLDGELAFKLHDT YGFPLDLTADVCRERGVTVDEPAFDDAMARQREQARAAGKFKAAQGLEYTGAKTTFHGYEEIAFDDAKVVALYVDGSAVT EVKAGQDAVVVLDHTPFYAESGGQVGDQGVLANASTRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRART QRNHSATHLMHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEQIVNDEILANAPGIVRVMPYDEAVKGG AMALFGEKYGDEVRVLDLGFSRELCGGTHVSRTGDIGLFKIVMEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAAL KAQPAELTQRIAQVQDQVKSLEKELAALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAA IVLAAVEGGKVSLIAGVTAEASKKVKAGELVNFVAQQVGGKGGGRPDMAQAGGTEPANLPAALAGVKGWVEARL
Specific function: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction:alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editin
COG id: COG0013
COG function: function code J; Alanyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI109148542, Length=976, Percent_Identity=37.2950819672131, Blast_Score=526, Evalue=1e-149, Organism=Homo sapiens, GI38569417, Length=964, Percent_Identity=32.7800829875519, Blast_Score=441, Evalue=1e-123, Organism=Escherichia coli, GI1789048, Length=875, Percent_Identity=62.9714285714286, Blast_Score=1104, Evalue=0.0, Organism=Caenorhabditis elegans, GI17506981, Length=975, Percent_Identity=36.4102564102564, Blast_Score=530, Evalue=1e-150, Organism=Caenorhabditis elegans, GI17536681, Length=752, Percent_Identity=32.7127659574468, Blast_Score=366, Evalue=1e-101, Organism=Saccharomyces cerevisiae, GI6324911, Length=966, Percent_Identity=36.3354037267081, Blast_Score=549, Evalue=1e-157, Organism=Drosophila melanogaster, GI24582809, Length=958, Percent_Identity=36.1169102296451, Blast_Score=536, Evalue=1e-152, Organism=Drosophila melanogaster, GI45552267, Length=958, Percent_Identity=36.1169102296451, Blast_Score=536, Evalue=1e-152, Organism=Drosophila melanogaster, GI24658214, Length=788, Percent_Identity=31.0913705583756, Blast_Score=340, Evalue=3e-93,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002318 - InterPro: IPR018162 - InterPro: IPR018165 - InterPro: IPR018164 - InterPro: IPR023033 - InterPro: IPR003156 - InterPro: IPR018163 - InterPro: IPR012947 [H]
Pfam domain/function: PF02272 DHHA1; PF01411 tRNA-synt_2c; PF07973 tRNA_SAD [H]
EC number: =6.1.1.7 [H]
Molecular weight: Translated: 95394; Mature: 95394
Theoretical pI: Translated: 5.96; Mature: 5.96
Prosite motif: PS50860 AA_TRNA_LIGASE_II_ALA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDRRPYTRA CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCCEEEEHEEECCCCCCCCHH TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYMLP HHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE CCCEEEEEEECCCCHHHHHHHHHCCCHHHEEEECCCCCCCCCCCCCEECCCCCCCCHHHH IFYDHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERL HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCHHHH AAVLQHVHSNYEIDLFQNLIKAAARVTEVSDLNNNSLKVIADHIRACAFLIVDGVIPGNE HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC GRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQEE CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH ERFFETIEHGMSILESALADLEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGVTVD HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECEEEEEEECCCCCCCCCCHHHHHHCCCCCC EPAFDDAMARQREQARAAGKFKAAQGLEYTGAKTTFHGYEEIAFDDAKVVALYVDGSAVT CCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCEECCHHHHCCCCCEEEEEEECCCEEE EVKAGQDAVVVLDHTPFYAESGGQVGDQGVLANASTRFAVADTLKVQADVIGHHGTLEQG HCCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCEEEHHHHEEHHHHHCCCCCCCCC TLKVGDVLRAEIDAQRRARTQRNHSATHLMHKALREVLGSHVQQKGSLVDADKTRFDFAH CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCC NAPLTDDEIRRVEQIVNDEILANAPGIVRVMPYDEAVKGGAMALFGEKYGDEVRVLDLGF CCCCCHHHHHHHHHHHCCHHHCCCCCEEEECCCHHHHCCCEEEEECCCCCCEEEEEECCC SRELCGGTHVSRTGDIGLFKIVMEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAAL CHHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH KAQPAELTQRIAQVQDQVKSLEKELAALKSKLASSQGDELAQQAVEVGGVHVLAATLDGA HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEEEEECCCC DAKTLRETVDKLKDKLKSAAIVLAAVEGGKVSLIAGVTAEASKKVKAGELVNFVAQQVGG CHHHHHHHHHHHHHHHHHHEEEEEEECCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHCC KGGGRPDMAQAGGTEPANLPAALAGVKGWVEARL CCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDRRPYTRA CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCCEEEEHEEECCCCCCCCHH TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYMLP HHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE CCCEEEEEEECCCCHHHHHHHHHCCCHHHEEEECCCCCCCCCCCCCEECCCCCCCCHHHH IFYDHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERL HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCHHHH AAVLQHVHSNYEIDLFQNLIKAAARVTEVSDLNNNSLKVIADHIRACAFLIVDGVIPGNE HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC GRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQEE CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH ERFFETIEHGMSILESALADLEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGVTVD HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECEEEEEEECCCCCCCCCCHHHHHHCCCCCC EPAFDDAMARQREQARAAGKFKAAQGLEYTGAKTTFHGYEEIAFDDAKVVALYVDGSAVT CCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCEECCHHHHCCCCCEEEEEEECCCEEE EVKAGQDAVVVLDHTPFYAESGGQVGDQGVLANASTRFAVADTLKVQADVIGHHGTLEQG HCCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCEEEHHHHEEHHHHHCCCCCCCCC TLKVGDVLRAEIDAQRRARTQRNHSATHLMHKALREVLGSHVQQKGSLVDADKTRFDFAH CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCC NAPLTDDEIRRVEQIVNDEILANAPGIVRVMPYDEAVKGGAMALFGEKYGDEVRVLDLGF CCCCCHHHHHHHHHHHCCHHHCCCCCEEEECCCHHHHCCCEEEEECCCCCCEEEEEECCC SRELCGGTHVSRTGDIGLFKIVMEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAAL CHHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH KAQPAELTQRIAQVQDQVKSLEKELAALKSKLASSQGDELAQQAVEVGGVHVLAATLDGA HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEEEEECCCC DAKTLRETVDKLKDKLKSAAIVLAAVEGGKVSLIAGVTAEASKKVKAGELVNFVAQQVGG CHHHHHHHHHHHHHHHHHHEEEEEEECCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHCC KGGGRPDMAQAGGTEPANLPAALAGVKGWVEARL CCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA