Click here to switch to the map view.

The map label for this gene is rbsC [H]

Identifier: 161524885

GI number: 161524885

Start: 1891640

End: 1892677

Strand: Direct

Name: rbsC [H]

Synonym: Bmul_1712

Alternate gene names: 161524885

Gene position: 1891640-1892677 (Clockwise)

Preceding gene: 161524884

Following gene: 161524886

Centisome position: 54.85

GC content: 67.73

Gene sequence:

>1038_bases
ATGATCAATCCGACCAAGCAGCGGAACCTCGCTTCCGCCACCGTCCATCCGGCGGCCGACCGTGCGCCGCAGGCGCGCGT
CGCCGATCATCGCGCGCGCATGCAGTCGCTGATGCGCACTGCCGGCATGCTACCGGTCCTTCTCGTCCTCTGCATCGGCT
TCGGTTTTCTGACCGACGGCTTCTTCACGCTGCAGAACCTGTCGATCGTCACGCAGCAGGCCTCGATCAACATCGTGCTC
GCGGCCGGGATGACATTCGTGATCCTGACGGGCGGCATCGACCTGTCGGTGGGCTCCGTGCTCGCCGCGGCGGCCGTCGC
GTCGCTGCTCGCGTCGACGATTCCGGGCTGGGGCTGGCTCGGCGTTCCCGCCGCGCTCGTGGTCGGCCTCGTGTTCGGCG
CGATCAACGGCGGCCTGATCTCGCTGCTGCGCCTGCCGCCGTTCATCGTGACGCTCGGCGCGATGACGGCCGTGCGCGGC
GTCGCGCGACTGCTCGGCAACGACACGACGGTATTCAATCCGCAACTGCCGTTCGCGTTCATCGGCAACGGCACGATCTT
CGGCGTGCCGTGGCTCGTCGTGATCGCTTGCGCGGTAATCGCGATTTCGTGGTTCATCCTGCGCCGCACGGTGCTCGGCA
TGCGCATCTATTCGGTCGGCGGCAATCCGGAAGCCGCTCGGCTGTCGGGCATCAACGTGCGCGCGATCCAGCTGTTCGTC
TATGCGGCCTCCGGGCTGCTCGCCGGGCTCGGTGCGGTGATGTCCGCGGCGCGCCTCTATGCGGCCAACGGGCTGCAGCT
CGGCCAGTCGTACGAACTCGACGCGATCGCCGCCGTGATTCTCGGCGGCACGAGCTTCGTCGGCGGCGTCGGCTCGATCG
TCGGCACGCTGATCGGCGCACTCATCATCGCGGTACTGACCAACGGGCTCGTACTGCTCGGCGTGTCCGACATCTGGCAG
TACATCATCAAGGGCCTCGTGATCATCGGCGCGGTCGCGCTCGACCGCTATCGCCAGCGCGACTCGGCGCGCACCTGA

Upstream 100 bases:

>100_bases
AGGAAGCGATCATCGCGCTCGCGACCGGCTCGCAGGCCGAACTCGCGGACGCGCACTGACCCCGGCCACTTCATTTCATT
CTTACATTCAGGTTACCGAA

Downstream 100 bases:

>100_bases
CGCGCGGCTCGCCGCTTTCCTCTGCGCGCAGGCAGGTCAACCTGCGCGCGTTCGCCAACAGACCTCACGGAGACACAACG
ACATGTTCAAGCACAAAGCC

Product: monosaccharide-transporting ATPase

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MINPTKQRNLASATVHPAADRAPQARVADHRARMQSLMRTAGMLPVLLVLCIGFGFLTDGFFTLQNLSIVTQQASINIVL
AAGMTFVILTGGIDLSVGSVLAAAAVASLLASTIPGWGWLGVPAALVVGLVFGAINGGLISLLRLPPFIVTLGAMTAVRG
VARLLGNDTTVFNPQLPFAFIGNGTIFGVPWLVVIACAVIAISWFILRRTVLGMRIYSVGGNPEAARLSGINVRAIQLFV
YAASGLLAGLGAVMSAARLYAANGLQLGQSYELDAIAAVILGGTSFVGGVGSIVGTLIGALIIAVLTNGLVLLGVSDIWQ
YIIKGLVIIGAVALDRYRQRDSART

Sequences:

>Translated_345_residues
MINPTKQRNLASATVHPAADRAPQARVADHRARMQSLMRTAGMLPVLLVLCIGFGFLTDGFFTLQNLSIVTQQASINIVL
AAGMTFVILTGGIDLSVGSVLAAAAVASLLASTIPGWGWLGVPAALVVGLVFGAINGGLISLLRLPPFIVTLGAMTAVRG
VARLLGNDTTVFNPQLPFAFIGNGTIFGVPWLVVIACAVIAISWFILRRTVLGMRIYSVGGNPEAARLSGINVRAIQLFV
YAASGLLAGLGAVMSAARLYAANGLQLGQSYELDAIAAVILGGTSFVGGVGSIVGTLIGALIIAVLTNGLVLLGVSDIWQ
YIIKGLVIIGAVALDRYRQRDSART
>Mature_345_residues
MINPTKQRNLASATVHPAADRAPQARVADHRARMQSLMRTAGMLPVLLVLCIGFGFLTDGFFTLQNLSIVTQQASINIVL
AAGMTFVILTGGIDLSVGSVLAAAAVASLLASTIPGWGWLGVPAALVVGLVFGAINGGLISLLRLPPFIVTLGAMTAVRG
VARLLGNDTTVFNPQLPFAFIGNGTIFGVPWLVVIACAVIAISWFILRRTVLGMRIYSVGGNPEAARLSGINVRAIQLFV
YAASGLLAGLGAVMSAARLYAANGLQLGQSYELDAIAAVILGGTSFVGGVGSIVGTLIGALIIAVLTNGLVLLGVSDIWQ
YIIKGLVIIGAVALDRYRQRDSART

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4158

COG function: function code R; Predicted ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=320, Percent_Identity=45, Blast_Score=189, Evalue=3e-49,
Organism=Escherichia coli, GI1790524, Length=303, Percent_Identity=37.953795379538, Blast_Score=155, Evalue=5e-39,
Organism=Escherichia coli, GI145693152, Length=331, Percent_Identity=32.9305135951662, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI1788896, Length=330, Percent_Identity=34.2424242424242, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI87082395, Length=293, Percent_Identity=37.2013651877133, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1788471, Length=340, Percent_Identity=37.3529411764706, Blast_Score=130, Evalue=9e-32,
Organism=Escherichia coli, GI145693214, Length=264, Percent_Identity=39.0151515151515, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1789992, Length=138, Percent_Identity=47.1014492753623, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1787793, Length=289, Percent_Identity=32.1799307958478, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI1787794, Length=313, Percent_Identity=30.0319488817891, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35760; Mature: 35760

Theoretical pI: Translated: 10.97; Mature: 10.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINPTKQRNLASATVHPAADRAPQARVADHRARMQSLMRTAGMLPVLLVLCIGFGFLTDG
CCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCC
FFTLQNLSIVTQQASINIVLAAGMTFVILTGGIDLSVGSVLAAAAVASLLASTIPGWGWL
HHHHHHHHHEEECCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHH
GVPAALVVGLVFGAINGGLISLLRLPPFIVTLGAMTAVRGVARLLGNDTTVFNPQLPFAF
HHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEE
IGNGTIFGVPWLVVIACAVIAISWFILRRTVLGMRIYSVGGNPEAARLSGINVRAIQLFV
ECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHCCCCCHHHHHHHH
YAASGLLAGLGAVMSAARLYAANGLQLGQSYELDAIAAVILGGTSFVGGVGSIVGTLIGA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LIIAVLTNGLVLLGVSDIWQYIIKGLVIIGAVALDRYRQRDSART
HHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MINPTKQRNLASATVHPAADRAPQARVADHRARMQSLMRTAGMLPVLLVLCIGFGFLTDG
CCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCC
FFTLQNLSIVTQQASINIVLAAGMTFVILTGGIDLSVGSVLAAAAVASLLASTIPGWGWL
HHHHHHHHHEEECCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHH
GVPAALVVGLVFGAINGGLISLLRLPPFIVTLGAMTAVRGVARLLGNDTTVFNPQLPFAF
HHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEE
IGNGTIFGVPWLVVIACAVIAISWFILRRTVLGMRIYSVGGNPEAARLSGINVRAIQLFV
ECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHCCCCCHHHHHHHH
YAASGLLAGLGAVMSAARLYAANGLQLGQSYELDAIAAVILGGTSFVGGVGSIVGTLIGA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LIIAVLTNGLVLLGVSDIWQYIIKGLVIIGAVALDRYRQRDSART
HHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]