Click here to switch to the map view.

The map label for this gene is rbcR [H]

Identifier: 161524697

GI number: 161524697

Start: 1681134

End: 1682027

Strand: Direct

Name: rbcR [H]

Synonym: Bmul_1524

Alternate gene names: 161524697

Gene position: 1681134-1682027 (Clockwise)

Preceding gene: 161524694

Following gene: 161524698

Centisome position: 48.75

GC content: 70.81

Gene sequence:

>894_bases
ATGACCCCGGATCAACTGATAACGTTCGCCGCCGTCGCCGAGCATCTGAACATCAGCCATGCGGCCGGCGCGCTGCATCT
GTCGCAGCCGGCCGTGTCCGGTCAGTTGCGGCTGCTGCAGGAGGAATTCGGCGAGCCGCTGTATCAGCGCGACGGGCGCG
GCATCCGGCTCACGCCGGTCGGCGAGCAGCTCGCGCAGTACGCAAAGGCGCAGCGCGATACGTTCGCGCAGGCACGCGCG
TTTCGCGACGCGGTGCGCGGCCTCGATGCCGGCACGCTGCGGATCGGCGCCAGCACGACGCCGGCGAGCTATCTGCTGCC
GTACCTGATCGCCGCTTTTCAGCCGCGTGCGCCGCGCATCGCGATCCAGACGATGAGCGGCAACACGGCCGACGTCGTCG
CCGCGTTGCCGTCGCTCGATATCGCGATGATCGAAGGGCCGCCCGGCGACGCGTTGCCGCCCGGTACCGCGGTGCACGTC
TGGCACGAGGACGAGATCGTCGCGATCGTGCCGGCCGGCCATCCGCTCGCCGCGCCCGAGTACGACGCCGGCGTGACGCT
CGACGCGCTCGCGCCGCATCCGCTCGTGCTGCGCGAGGAGGGCTCGGGCGTGCGGCAGCTCGTCGAGCGCGCGTTCGCGC
AGTGCGCGGCGCCGATGCGCGTCGCGTTCGAGATCGCCGGCGTCGAAGCCGTGAAGGAGGCCGTGCGCGCGGGCATGGGC
GTCGGCTTTGTGTCCGCGATGTCGTTGCGCCATCGCGATGCGGCGCTCGTCATGCGTTCTTTCGCGCCGACGCCGCTCAC
GCGGCATTTCTCGATTCTGGTTCCGCATGGCAGCGCGCCATCGCGGGCCGCCGCGCAGTTCCTCGAGATGAGCGTCGCGC
ACCCGATCGGATAA

Upstream 100 bases:

>100_bases
GACAGCGTCGTTGCGATGGTCTAATCCTAAATTCGTTATATCGATATGAAAAATTGTGATTTGTGACATAAACTATCCGC
CAAACCGATAATTCGACGCC

Downstream 100 bases:

>100_bases
CGGCCGCGGCTCTGCGCGCGGTGCACCACCACGGTGCGACGGCAGGCACGAACGATGCGCCTCGAGACGCGCGCGTCGCG
CGGGCGGGGCGGGCCCGCGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MTPDQLITFAAVAEHLNISHAAGALHLSQPAVSGQLRLLQEEFGEPLYQRDGRGIRLTPVGEQLAQYAKAQRDTFAQARA
FRDAVRGLDAGTLRIGASTTPASYLLPYLIAAFQPRAPRIAIQTMSGNTADVVAALPSLDIAMIEGPPGDALPPGTAVHV
WHEDEIVAIVPAGHPLAAPEYDAGVTLDALAPHPLVLREEGSGVRQLVERAFAQCAAPMRVAFEIAGVEAVKEAVRAGMG
VGFVSAMSLRHRDAALVMRSFAPTPLTRHFSILVPHGSAPSRAAAQFLEMSVAHPIG

Sequences:

>Translated_297_residues
MTPDQLITFAAVAEHLNISHAAGALHLSQPAVSGQLRLLQEEFGEPLYQRDGRGIRLTPVGEQLAQYAKAQRDTFAQARA
FRDAVRGLDAGTLRIGASTTPASYLLPYLIAAFQPRAPRIAIQTMSGNTADVVAALPSLDIAMIEGPPGDALPPGTAVHV
WHEDEIVAIVPAGHPLAAPEYDAGVTLDALAPHPLVLREEGSGVRQLVERAFAQCAAPMRVAFEIAGVEAVKEAVRAGMG
VGFVSAMSLRHRDAALVMRSFAPTPLTRHFSILVPHGSAPSRAAAQFLEMSVAHPIG
>Mature_296_residues
TPDQLITFAAVAEHLNISHAAGALHLSQPAVSGQLRLLQEEFGEPLYQRDGRGIRLTPVGEQLAQYAKAQRDTFAQARAF
RDAVRGLDAGTLRIGASTTPASYLLPYLIAAFQPRAPRIAIQTMSGNTADVVAALPSLDIAMIEGPPGDALPPGTAVHVW
HEDEIVAIVPAGHPLAAPEYDAGVTLDALAPHPLVLREEGSGVRQLVERAFAQCAAPMRVAFEIAGVEAVKEAVRAGMGV
GFVSAMSLRHRDAALVMRSFAPTPLTRHFSILVPHGSAPSRAAAQFLEMSVAHPIG

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=300, Percent_Identity=32.6666666666667, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1788481, Length=248, Percent_Identity=33.8709677419355, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1787530, Length=267, Percent_Identity=27.3408239700375, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1790208, Length=273, Percent_Identity=28.9377289377289, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790399, Length=268, Percent_Identity=25.7462686567164, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787879, Length=243, Percent_Identity=28.3950617283951, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1788296, Length=250, Percent_Identity=26.4, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87081904, Length=202, Percent_Identity=30.1980198019802, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788626, Length=245, Percent_Identity=30.2040816326531, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788887, Length=186, Percent_Identity=31.7204301075269, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1789204, Length=260, Percent_Identity=26.9230769230769, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787806, Length=181, Percent_Identity=27.0718232044199, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31411; Mature: 31280

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPDQLITFAAVAEHLNISHAAGALHLSQPAVSGQLRLLQEEFGEPLYQRDGRGIRLTPV
CCHHHHHHHHHHHHHCCCHHHHCEEEECCCCHHHHHHHHHHHHCCHHHHCCCCCEEECCC
GEQLAQYAKAQRDTFAQARAFRDAVRGLDAGTLRIGASTTPASYLLPYLIAAFQPRAPRI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEE
AIQTMSGNTADVVAALPSLDIAMIEGPPGDALPPGTAVHVWHEDEIVAIVPAGHPLAAPE
EEEECCCCCHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCC
YDAGVTLDALAPHPLVLREEGSGVRQLVERAFAQCAAPMRVAFEIAGVEAVKEAVRAGMG
CCCCEEECCCCCCCEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
VGFVSAMSLRHRDAALVMRSFAPTPLTRHFSILVPHGSAPSRAAAQFLEMSVAHPIG
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TPDQLITFAAVAEHLNISHAAGALHLSQPAVSGQLRLLQEEFGEPLYQRDGRGIRLTPV
CHHHHHHHHHHHHHCCCHHHHCEEEECCCCHHHHHHHHHHHHCCHHHHCCCCCEEECCC
GEQLAQYAKAQRDTFAQARAFRDAVRGLDAGTLRIGASTTPASYLLPYLIAAFQPRAPRI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEE
AIQTMSGNTADVVAALPSLDIAMIEGPPGDALPPGTAVHVWHEDEIVAIVPAGHPLAAPE
EEEECCCCCHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCC
YDAGVTLDALAPHPLVLREEGSGVRQLVERAFAQCAAPMRVAFEIAGVEAVKEAVRAGMG
CCCCEEECCCCCCCEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
VGFVSAMSLRHRDAALVMRSFAPTPLTRHFSILVPHGSAPSRAAAQFLEMSVAHPIG
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]