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The map label for this gene is yfdE [H]

Identifier: 161524622

GI number: 161524622

Start: 1595209

End: 1596414

Strand: Direct

Name: yfdE [H]

Synonym: Bmul_1449

Alternate gene names: 161524622

Gene position: 1595209-1596414 (Clockwise)

Preceding gene: 161524621

Following gene: 161524623

Centisome position: 46.26

GC content: 68.82

Gene sequence:

>1206_bases
ATGAGCGCCAGCCAGGGCCCGCTCGCGGGCGTCAAAGTGCTCGAATTCGGAACGCTGATCGCCGGGCCGTTCGCGTCGCG
GCTGTTCGCCGAGTTCGGCGCCGAAGTCATCAAGATCGAAGACCCGAAAGGCGGCGATCCGCTGCGCAAGTGGCGCAAGC
TTCATCCGGAGCAGGGCGGCACGTCGCTGTGGTGGGCCGTGCAGGCGCGCAACAAGAAATCGGTCACGCTGAACCTGAAA
TCGGACGCCGGCAAGACGATCGCGCGCCAGCTCGCGCGCGAAGCCGACATCGTGATCGAGAACTTCCGTCCGGGCCTGCT
CGAAAAGCTCGGCCTCGGCTACGACGTGCTGTCGGCCGAGAATCCGGGCCTCGTGATGGTGCGCCTGTCCGGCTACGGGC
AGACGGGCCCGTATCGCGACCGCCCGGGCTTCGGCGCGATCGCCGAATCGATGGGCGGGCTGCGCCACATCACCGGCTAT
CCCGACCTGCCGCCGCCGCGCATCGGCATCTCGATCGGCGATTCGATCGCCGCGCTGCACGGCGTGATCGGCGCGCTGAT
GGCGCTGCATCACCGCAAGGTGAACGGCGGCGCGGGGCAGGTCGTCGACGTCGCGCTATATGAAGCGGTGTTCAACATGA
TGGAAAGCGTCGTGCCGGAGTACGGCGTGTACGGGATGGTGCGCGAGCGCACCGGCGCGTCGCTGCCCGGCATCGTGCCG
TCGAACACGTACGCGTGCCGCGACGGCAGCATCGTGATCGGCGGCAACAGCGATCCGATCTTCAAGCGGCTGATGAAGGC
GATCGAGCGCGACGATCTCGCGGACGATCCGGCGCTCGCGCAGAACGACGGGCGCGTGCCGCGCACGCAGGAAATCGACG
ACGCGATCGCCGCATGGCTCGCGCCGCGCACGATCGACGAGGCGCTCGAGGTGTTGCATGCGGCCGACGTGCCGGCCGGG
CGCATCTACAGCGTCGCCGACATGTTCACCGATCCGCAGTTCGCCGCACGCCAGATGATCCAGCACTTCAAGCTCGCCGA
CGGTACCGACATCCCGCTGCCGAACGTGACGCCGAAGCTGTCCGACACGCCGGGCGAAACGCGCTGGCTCGGGCCGGCGC
TCGGCGAGCATACGGACGAGGTGCTGCGCGGCCTCGGCTACGACGCGCAGGCCATCGCGGCGCTGCGCGAGGCCGGCGCG
ATCTGA

Upstream 100 bases:

>100_bases
GTCGACGCGGGCACGATCGCCCGCGCGATGCTCGACCGCCGCACGATGTAATTTCCGGCGCCGCCCGCCGGCGGCGCCGT
TCCTCATGTCAGGGAGACAC

Downstream 100 bases:

>100_bases
GCGCGAACGCCGCCGCGCGATGCGGCGGCGCACCGTGCGCGCATGTGTCCGGCTGCCGTCGGACTGTCGCTCGCGCGCCA
TCTTTCCTCGGTTACAATCG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MSASQGPLAGVKVLEFGTLIAGPFASRLFAEFGAEVIKIEDPKGGDPLRKWRKLHPEQGGTSLWWAVQARNKKSVTLNLK
SDAGKTIARQLAREADIVIENFRPGLLEKLGLGYDVLSAENPGLVMVRLSGYGQTGPYRDRPGFGAIAESMGGLRHITGY
PDLPPPRIGISIGDSIAALHGVIGALMALHHRKVNGGAGQVVDVALYEAVFNMMESVVPEYGVYGMVRERTGASLPGIVP
SNTYACRDGSIVIGGNSDPIFKRLMKAIERDDLADDPALAQNDGRVPRTQEIDDAIAAWLAPRTIDEALEVLHAADVPAG
RIYSVADMFTDPQFAARQMIQHFKLADGTDIPLPNVTPKLSDTPGETRWLGPALGEHTDEVLRGLGYDAQAIAALREAGA
I

Sequences:

>Translated_401_residues
MSASQGPLAGVKVLEFGTLIAGPFASRLFAEFGAEVIKIEDPKGGDPLRKWRKLHPEQGGTSLWWAVQARNKKSVTLNLK
SDAGKTIARQLAREADIVIENFRPGLLEKLGLGYDVLSAENPGLVMVRLSGYGQTGPYRDRPGFGAIAESMGGLRHITGY
PDLPPPRIGISIGDSIAALHGVIGALMALHHRKVNGGAGQVVDVALYEAVFNMMESVVPEYGVYGMVRERTGASLPGIVP
SNTYACRDGSIVIGGNSDPIFKRLMKAIERDDLADDPALAQNDGRVPRTQEIDDAIAAWLAPRTIDEALEVLHAADVPAG
RIYSVADMFTDPQFAARQMIQHFKLADGTDIPLPNVTPKLSDTPGETRWLGPALGEHTDEVLRGLGYDAQAIAALREAGA
I
>Mature_400_residues
SASQGPLAGVKVLEFGTLIAGPFASRLFAEFGAEVIKIEDPKGGDPLRKWRKLHPEQGGTSLWWAVQARNKKSVTLNLKS
DAGKTIARQLAREADIVIENFRPGLLEKLGLGYDVLSAENPGLVMVRLSGYGQTGPYRDRPGFGAIAESMGGLRHITGYP
DLPPPRIGISIGDSIAALHGVIGALMALHHRKVNGGAGQVVDVALYEAVFNMMESVVPEYGVYGMVRERTGASLPGIVPS
NTYACRDGSIVIGGNSDPIFKRLMKAIERDDLADDPALAQNDGRVPRTQEIDDAIAAWLAPRTIDEALEVLHAADVPAGR
IYSVADMFTDPQFAARQMIQHFKLADGTDIPLPNVTPKLSDTPGETRWLGPALGEHTDEVLRGLGYDAQAIAALREAGAI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=396, Percent_Identity=31.0606060606061, Blast_Score=202, Evalue=6e-52,
Organism=Homo sapiens, GI300863124, Length=423, Percent_Identity=31.2056737588652, Blast_Score=194, Evalue=1e-49,
Organism=Homo sapiens, GI300863126, Length=396, Percent_Identity=29.2929292929293, Blast_Score=169, Evalue=4e-42,
Organism=Homo sapiens, GI13376042, Length=423, Percent_Identity=28.1323877068558, Blast_Score=149, Evalue=6e-36,
Organism=Homo sapiens, GI266456254, Length=394, Percent_Identity=25.8883248730964, Blast_Score=113, Evalue=4e-25,
Organism=Homo sapiens, GI42794625, Length=394, Percent_Identity=25.8883248730964, Blast_Score=112, Evalue=4e-25,
Organism=Homo sapiens, GI266458393, Length=260, Percent_Identity=28.8461538461538, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI266458397, Length=260, Percent_Identity=28.8461538461538, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI266458395, Length=131, Percent_Identity=35.1145038167939, Blast_Score=89, Evalue=6e-18,
Organism=Homo sapiens, GI42822893, Length=131, Percent_Identity=35.1145038167939, Blast_Score=89, Evalue=1e-17,
Organism=Escherichia coli, GI87082093, Length=339, Percent_Identity=33.6283185840708, Blast_Score=206, Evalue=2e-54,
Organism=Escherichia coli, GI1786222, Length=403, Percent_Identity=30.0248138957816, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1788717, Length=430, Percent_Identity=29.5348837209302, Blast_Score=160, Evalue=2e-40,
Organism=Caenorhabditis elegans, GI115535051, Length=337, Percent_Identity=26.4094955489614, Blast_Score=102, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI32564160, Length=304, Percent_Identity=26.9736842105263, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24648431, Length=396, Percent_Identity=31.5656565656566, Blast_Score=219, Evalue=2e-57,
Organism=Drosophila melanogaster, GI24585488, Length=364, Percent_Identity=28.021978021978, Blast_Score=110, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42957; Mature: 42825

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSASQGPLAGVKVLEFGTLIAGPFASRLFAEFGAEVIKIEDPKGGDPLRKWRKLHPEQGG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCC
TSLWWAVQARNKKSVTLNLKSDAGKTIARQLAREADIVIENFRPGLLEKLGLGYDVLSAE
CEEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEECCC
NPGLVMVRLSGYGQTGPYRDRPGFGAIAESMGGLRHITGYPDLPPPRIGISIGDSIAALH
CCCEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCCEEEECCHHHHHHH
GVIGALMALHHRKVNGGAGQVVDVALYEAVFNMMESVVPEYGVYGMVRERTGASLPGIVP
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCC
SNTYACRDGSIVIGGNSDPIFKRLMKAIERDDLADDPALAQNDGRVPRTQEIDDAIAAWL
CCCEEECCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
APRTIDEALEVLHAADVPAGRIYSVADMFTDPQFAARQMIQHFKLADGTDIPLPNVTPKL
CHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
SDTPGETRWLGPALGEHTDEVLRGLGYDAQAIAALREAGAI
CCCCCCCEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
SASQGPLAGVKVLEFGTLIAGPFASRLFAEFGAEVIKIEDPKGGDPLRKWRKLHPEQGG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCC
TSLWWAVQARNKKSVTLNLKSDAGKTIARQLAREADIVIENFRPGLLEKLGLGYDVLSAE
CEEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEECCC
NPGLVMVRLSGYGQTGPYRDRPGFGAIAESMGGLRHITGYPDLPPPRIGISIGDSIAALH
CCCEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCCEEEECCHHHHHHH
GVIGALMALHHRKVNGGAGQVVDVALYEAVFNMMESVVPEYGVYGMVRERTGASLPGIVP
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCC
SNTYACRDGSIVIGGNSDPIFKRLMKAIERDDLADDPALAQNDGRVPRTQEIDDAIAAWL
CCCEEECCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
APRTIDEALEVLHAADVPAGRIYSVADMFTDPQFAARQMIQHFKLADGTDIPLPNVTPKL
CHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
SDTPGETRWLGPALGEHTDEVLRGLGYDAQAIAALREAGAI
CCCCCCCEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]