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The map label for this gene is radC [C]

Identifier: 161523974

GI number: 161523974

Start: 873293

End: 874063

Strand: Reverse

Name: radC [C]

Synonym: Bmul_0794

Alternate gene names: 161523974

Gene position: 874063-873293 (Counterclockwise)

Preceding gene: 161523983

Following gene: 161523973

Centisome position: 25.35

GC content: 73.15

Gene sequence:

>771_bases
ATGCTCATATCCTGCCCTCTTCCGCCCGTCGAATGCCGCGACGCGCACGACGCGCCGCCGGCCCCGCCCGAGCGTGCGCA
GCCCGACGCGCCGCGCTGGCGCCGGCCGGGCAACTGGCGGCCGAACCTGCCGCGCGAACGGCTGCTCGAGCGCGGGCCCG
CCGCGCTGACCGACGACGAGCTCGTCGCGCTGCTGCTCGGCTCGGGCGTGCGCGGGCACAGCGTGTTCGCGAGCGCCCGC
GCGCTGCTGGTGCGCTTCGGTTCGCTGCGCGGGCTGCTCGATGCGACGCCGGCCGATTTCGGCGCATGTCCGGGCATCGG
GCCGGCGCGCGCGGGACTGCTCGGCGCGATCACCGAGCTCGCGCGCCGCGCGCTCGCGGAAAAGGCGCTGCTGCGCCGGC
CGATCGACTCGCCGGCCGCCGTCGACGACTATCTTCGGCTGAAGATCGGCACACGGCCGTACGAAGTCTTCGTCACGCTG
TATCTGGACGCGCGGCACGGGCTCATCGACATGGAGGAAAACACGCGCGGCTCGCTGACGCGCATGGCCGTCTATCCGCG
CGAGATCGTGCGCAGCGCGATGCGGATGAACGCGGCCGCGCTGATCGTCGCGCACAATCATCCGTCGGGCGCCGTGCAGC
CGAGTGCCGAGGATCGGCGGCTCACACGCACGCTGCGCGACGCGCTCGCGCTGGTCGACGTGCGGCTGCTCGACCACGTC
GTCGTCGGCAAGGCCGACACATTCTCGTTCGCGCGCGCCGGTTGGCTGTAG

Upstream 100 bases:

>100_bases
CGAGGCCCAGCGCAAAGCCAATATTGTAAGTCACCTGAGCGCGCAAGGCTGAAAGTGCGACGACGTTGCACGTGCGGCCG
CCGCCAATGGAGTTTCGACG

Downstream 100 bases:

>100_bases
ACTGTGGCGCGGCGCCCCTCCGCGGAGCGCCGCAACGGCGATGCGAAATTAGGTTTGATTTTCCTGATATTTTTCTGCTA
GAATCGCCGTCTGTCTTTTT

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MLISCPLPPVECRDAHDAPPAPPERAQPDAPRWRRPGNWRPNLPRERLLERGPAALTDDELVALLLGSGVRGHSVFASAR
ALLVRFGSLRGLLDATPADFGACPGIGPARAGLLGAITELARRALAEKALLRRPIDSPAAVDDYLRLKIGTRPYEVFVTL
YLDARHGLIDMEENTRGSLTRMAVYPREIVRSAMRMNAAALIVAHNHPSGAVQPSAEDRRLTRTLRDALALVDVRLLDHV
VVGKADTFSFARAGWL

Sequences:

>Translated_256_residues
MLISCPLPPVECRDAHDAPPAPPERAQPDAPRWRRPGNWRPNLPRERLLERGPAALTDDELVALLLGSGVRGHSVFASAR
ALLVRFGSLRGLLDATPADFGACPGIGPARAGLLGAITELARRALAEKALLRRPIDSPAAVDDYLRLKIGTRPYEVFVTL
YLDARHGLIDMEENTRGSLTRMAVYPREIVRSAMRMNAAALIVAHNHPSGAVQPSAEDRRLTRTLRDALALVDVRLLDHV
VVGKADTFSFARAGWL
>Mature_256_residues
MLISCPLPPVECRDAHDAPPAPPERAQPDAPRWRRPGNWRPNLPRERLLERGPAALTDDELVALLLGSGVRGHSVFASAR
ALLVRFGSLRGLLDATPADFGACPGIGPARAGLLGAITELARRALAEKALLRRPIDSPAAVDDYLRLKIGTRPYEVFVTL
YLDARHGLIDMEENTRGSLTRMAVYPREIVRSAMRMNAAALIVAHNHPSGAVQPSAEDRRLTRTLRDALALVDVRLLDHV
VVGKADTFSFARAGWL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=221, Percent_Identity=39.3665158371041, Blast_Score=178, Evalue=3e-46,
Organism=Escherichia coli, GI2367100, Length=120, Percent_Identity=45.8333333333333, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1788997, Length=120, Percent_Identity=45, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1788312, Length=143, Percent_Identity=41.2587412587413, Blast_Score=101, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 27930; Mature: 27930

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLISCPLPPVECRDAHDAPPAPPERAQPDAPRWRRPGNWRPNLPRERLLERGPAALTDDE
CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHH
LVALLLGSGVRGHSVFASARALLVRFGSLRGLLDATPADFGACPGIGPARAGLLGAITEL
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
ARRALAEKALLRRPIDSPAAVDDYLRLKIGTRPYEVFVTLYLDARHGLIDMEENTRGSLT
HHHHHHHHHHHHCCCCCCHHHHHEEEEEECCCCEEEEEEEEEECCCCEEECCCCCCCCCH
RMAVYPREIVRSAMRMNAAALIVAHNHPSGAVQPSAEDRRLTRTLRDALALVDVRLLDHV
HHHHCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VVGKADTFSFARAGWL
HHCCCCHHHHHHHCCC
>Mature Secondary Structure
MLISCPLPPVECRDAHDAPPAPPERAQPDAPRWRRPGNWRPNLPRERLLERGPAALTDDE
CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHH
LVALLLGSGVRGHSVFASARALLVRFGSLRGLLDATPADFGACPGIGPARAGLLGAITEL
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
ARRALAEKALLRRPIDSPAAVDDYLRLKIGTRPYEVFVTLYLDARHGLIDMEENTRGSLT
HHHHHHHHHHHHCCCCCCHHHHHEEEEEECCCCEEEEEEEEEECCCCEEECCCCCCCCCH
RMAVYPREIVRSAMRMNAAALIVAHNHPSGAVQPSAEDRRLTRTLRDALALVDVRLLDHV
HHHHCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VVGKADTFSFARAGWL
HHCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA