Click here to switch to the map view.

The map label for this gene is clpS

Identifier: 161523956

GI number: 161523956

Start: 852437

End: 852751

Strand: Direct

Name: clpS

Synonym: Bmul_0776

Alternate gene names: 161523956

Gene position: 852437-852751 (Clockwise)

Preceding gene: 161523954

Following gene: 161523957

Centisome position: 24.72

GC content: 57.46

Gene sequence:

>315_bases
ATGGCGATTATCCCGGACAAGCAGGACAGCACGGTCCTGGAACGCAAGCAACAGAAGCTCAAGCCACCTTCGATGTACAA
GGTGGTGTTGCTGAACGACGACTTCACGCCGATGGAATTCGTCGTGATGGTCGTGCAGGAGTATTTCAAGAAGGATCGCG
AGACGGCCACGCAGATCATGCTGAAGGTCCATCGCGAAGGGCGAGGGGTTTGTGGGGTCTATACGCGGGACATCGCGTCG
ACCAAAGTTGAGCAAGTCGTTACCCATGCGCGGCAGGCCGGGCATCCGCTGCAGTGCGTGATGGAGGAAGCATGA

Upstream 100 bases:

>100_bases
GAAGACGATCGCGTGTTTCCGGGATACCGGGGAGGGCGCCGGCCGGTCGGTCGGGTAATGGCAGGATTGCGGGCCTGTCC
GAGTTGTTTAGAATGGGTGT

Downstream 100 bases:

>100_bases
TTGCCCAGGAATTGGAAGTCAGCCTGCACATGGCGTTCATGGAAGCACGCCAGGCGCGCCATGAGTTCATTACGGTCGAG
CACCTGCTGCTCGCCCTGCT

Product: ATP-dependent Clp protease adaptor protein ClpS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 104; Mature: 103

Protein sequence:

>104_residues
MAIIPDKQDSTVLERKQQKLKPPSMYKVVLLNDDFTPMEFVVMVVQEYFKKDRETATQIMLKVHREGRGVCGVYTRDIAS
TKVEQVVTHARQAGHPLQCVMEEA

Sequences:

>Translated_104_residues
MAIIPDKQDSTVLERKQQKLKPPSMYKVVLLNDDFTPMEFVVMVVQEYFKKDRETATQIMLKVHREGRGVCGVYTRDIAS
TKVEQVVTHARQAGHPLQCVMEEA
>Mature_103_residues
AIIPDKQDSTVLERKQQKLKPPSMYKVVLLNDDFTPMEFVVMVVQEYFKKDRETATQIMLKVHREGRGVCGVYTRDIAST
KVEQVVTHARQAGHPLQCVMEEA

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family

Homologues:

Organism=Escherichia coli, GI1787108, Length=96, Percent_Identity=53.125, Blast_Score=116, Evalue=4e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CLPS_BURA4 (B1YVB1)

Other databases:

- EMBL:   CP001025
- RefSeq:   YP_001809131.1
- ProteinModelPortal:   B1YVB1
- SMR:   B1YVB1
- GeneID:   6178326
- GenomeReviews:   CP001025_GR
- KEGG:   bac:BamMC406_2437
- HOGENOM:   HBG644923
- OMA:   FVIHILE
- ProtClustDB:   PRK00033
- BioCyc:   BAMB398577:BAMMC406_2437-MONOMER
- HAMAP:   MF_00302
- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719
- Gene3D:   G3DSA:3.30.1390.10

Pfam domain/function: PF02617 ClpS; SSF54736 Ribosomal_L7/12_C/ClpS-like

EC number: NA

Molecular weight: Translated: 11936; Mature: 11805

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIIPDKQDSTVLERKQQKLKPPSMYKVVLLNDDFTPMEFVVMVVQEYFKKDRETATQIM
CCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LKVHREGRGVCGVYTRDIASTKVEQVVTHARQAGHPLQCVMEEA
HHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCC
>Mature Secondary Structure 
AIIPDKQDSTVLERKQQKLKPPSMYKVVLLNDDFTPMEFVVMVVQEYFKKDRETATQIM
CCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LKVHREGRGVCGVYTRDIASTKVEQVVTHARQAGHPLQCVMEEA
HHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA