Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 161523942

GI number: 161523942

Start: 834180

End: 835571

Strand: Direct

Name: yfdE [H]

Synonym: Bmul_0762

Alternate gene names: 161523942

Gene position: 834180-835571 (Clockwise)

Preceding gene: 161523940

Following gene: 161523944

Centisome position: 24.19

GC content: 72.77

Gene sequence:

>1392_bases
ATGACACCCGAACACGCACTGACCCATTTGTGGCAACGCGCGCACGGCGACGCCGACGCGCTGTCGCGAGCGGCCGTGAC
CGGACACGATCCGGTCCTGCCCTCGACGTTTCGCATCGGTACGCTCGCGGCCGCGACGATCGCGGCGGCCGGCCTCGCGG
CGGCCGAATGCCATCGGTTGCGCACCGGCGTCGCGCAGCGTGTCGACGTGTCGGTGCGCGACGCGCTCGTCGCGTTTCGC
AGCGAACGCTATCTGCGCGTCGACGACGGACCGCCGCCCGAGCTGCGCCACCCGGTCACGGGCTTCTACGCGACGCGCGA
CGGCCGCTGGATCCAGCTGCATGCGAACTTTGCGCATCATCTGCACGGCATCCTCGACCTGCTCGATTGCGGCGAACGGC
CGGCCGATGTCGCCGCGGCGATCCGCACCTGGGATGGCGCCGCGCTCGATACCGCGCTGGCAGACGCCGGGCTCTGCGCG
GCGTTGATCAGAACGCCTGACGAGTGGGCCGCGCACGAACAGGCCCGCGCGATCGCGGCGCTGCCACTGTTCGAGATCGA
ACGGATCGGCGACGCGCCGCCGGAGCCGATCGGCGGCGGCACCGCCGCGCGCCCGCTCGACGGCGTACGCGTGCTCGATC
TGACGCGCATCATCGCGGGGCCGGTCGCGGGGCGCACGCTCGCTTCGCACGGCGCGCAGACTCTGCTCGTGAACGGGCCG
CACCTGCCGAACATCGCGCCGCTCGTGATCGACAACGGTCGCGGCAAGCGTTCCGCGTGGCTCGATCTGCGCGAGACGGC
GGGCGTCGACGCGCTGCGCGCGCTCGTGCGCGACGCCGACATCTTCCTGCAGGCATATCGTCCGGGTGCGCTCGCCGCGC
GCGGCTTCGGACCGCAGGCGCTGGCGGCGTCGCGTCCCGGCATCGTCTGCGTATCGGTGTCGGCGTACGGGCATGCGGGC
CCGTGGGCCGCACGGCGCGGCTTCGACAGTCTCGTGCAATCGGCGAGCGGCATCGCGTGGCGCGAGCAGCAGGCCGCGCA
CGCGGACGCGCCGCGCCATCTGCCCTGCCAGGCGCTCGATCATGCGACCGGATACCTGGCCGCATTCGGCGCGATGATTG
CGCTGATACGTCGCGCGCGCGAAGGGGGAAGCTGGCATGTGCGCGTGTCGCTCGCGCAGACGGGGCACTGGCTGCAATCG
TTCGGCGCGGTGCCGGACGGCATGCAGGCGCGCGATCTCGCGCTCGACGACGTACGCGACCGGATCGATCGCATCGCGTC
GGCGTTCGGCACGATCGATACGGTCCGGCCCGCCGAGCGGCTGTCGGCGACGCCGCCGTCGTTCGCGCGCCCGCCGGTGC
CGCTCGGCAGCGACGAGGCCCGCTGGCTCTGA

Upstream 100 bases:

>100_bases
CTACAACTATTCGTTATGTATTGATTCGCGCAATCAAGATTGATCGCGTGTGTGGCGAATTCTAGACTCGATTCCGTCTT
CGCAACGACGGACTGCCGCC

Downstream 100 bases:

>100_bases
ACGCCGCGCGCGAAGCGCGGCTTGCTTATTTGCGCAGTTCGACGACGAAGTCGTAGTAGTCGTTGCGGCAATACGTGTCG
GTCAGCTCGATCGCGCGCTG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 463; Mature: 462

Protein sequence:

>463_residues
MTPEHALTHLWQRAHGDADALSRAAVTGHDPVLPSTFRIGTLAAATIAAAGLAAAECHRLRTGVAQRVDVSVRDALVAFR
SERYLRVDDGPPPELRHPVTGFYATRDGRWIQLHANFAHHLHGILDLLDCGERPADVAAAIRTWDGAALDTALADAGLCA
ALIRTPDEWAAHEQARAIAALPLFEIERIGDAPPEPIGGGTAARPLDGVRVLDLTRIIAGPVAGRTLASHGAQTLLVNGP
HLPNIAPLVIDNGRGKRSAWLDLRETAGVDALRALVRDADIFLQAYRPGALAARGFGPQALAASRPGIVCVSVSAYGHAG
PWAARRGFDSLVQSASGIAWREQQAAHADAPRHLPCQALDHATGYLAAFGAMIALIRRAREGGSWHVRVSLAQTGHWLQS
FGAVPDGMQARDLALDDVRDRIDRIASAFGTIDTVRPAERLSATPPSFARPPVPLGSDEARWL

Sequences:

>Translated_463_residues
MTPEHALTHLWQRAHGDADALSRAAVTGHDPVLPSTFRIGTLAAATIAAAGLAAAECHRLRTGVAQRVDVSVRDALVAFR
SERYLRVDDGPPPELRHPVTGFYATRDGRWIQLHANFAHHLHGILDLLDCGERPADVAAAIRTWDGAALDTALADAGLCA
ALIRTPDEWAAHEQARAIAALPLFEIERIGDAPPEPIGGGTAARPLDGVRVLDLTRIIAGPVAGRTLASHGAQTLLVNGP
HLPNIAPLVIDNGRGKRSAWLDLRETAGVDALRALVRDADIFLQAYRPGALAARGFGPQALAASRPGIVCVSVSAYGHAG
PWAARRGFDSLVQSASGIAWREQQAAHADAPRHLPCQALDHATGYLAAFGAMIALIRRAREGGSWHVRVSLAQTGHWLQS
FGAVPDGMQARDLALDDVRDRIDRIASAFGTIDTVRPAERLSATPPSFARPPVPLGSDEARWL
>Mature_462_residues
TPEHALTHLWQRAHGDADALSRAAVTGHDPVLPSTFRIGTLAAATIAAAGLAAAECHRLRTGVAQRVDVSVRDALVAFRS
ERYLRVDDGPPPELRHPVTGFYATRDGRWIQLHANFAHHLHGILDLLDCGERPADVAAAIRTWDGAALDTALADAGLCAA
LIRTPDEWAAHEQARAIAALPLFEIERIGDAPPEPIGGGTAARPLDGVRVLDLTRIIAGPVAGRTLASHGAQTLLVNGPH
LPNIAPLVIDNGRGKRSAWLDLRETAGVDALRALVRDADIFLQAYRPGALAARGFGPQALAASRPGIVCVSVSAYGHAGP
WAARRGFDSLVQSASGIAWREQQAAHADAPRHLPCQALDHATGYLAAFGAMIALIRRAREGGSWHVRVSLAQTGHWLQSF
GAVPDGMQARDLALDDVRDRIDRIASAFGTIDTVRPAERLSATPPSFARPPVPLGSDEARWL

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=206, Percent_Identity=30.0970873786408, Blast_Score=96, Evalue=5e-20,
Organism=Homo sapiens, GI300863124, Length=206, Percent_Identity=30.0970873786408, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI300863126, Length=147, Percent_Identity=30.6122448979592, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI42794625, Length=199, Percent_Identity=28.643216080402, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI266456254, Length=199, Percent_Identity=28.643216080402, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI266458397, Length=199, Percent_Identity=28.643216080402, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI266458393, Length=199, Percent_Identity=28.643216080402, Blast_Score=75, Evalue=9e-14,
Organism=Escherichia coli, GI87082093, Length=199, Percent_Identity=25.1256281407035, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1788717, Length=149, Percent_Identity=26.1744966442953, Blast_Score=72, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI115535051, Length=203, Percent_Identity=30.5418719211823, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI32564160, Length=202, Percent_Identity=28.7128712871287, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24648431, Length=190, Percent_Identity=31.5789473684211, Blast_Score=92, Evalue=8e-19,
Organism=Drosophila melanogaster, GI24585488, Length=203, Percent_Identity=27.5862068965517, Blast_Score=80, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 49258; Mature: 49127

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPEHALTHLWQRAHGDADALSRAAVTGHDPVLPSTFRIGTLAAATIAAAGLAAAECHRL
CCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
RTGVAQRVDVSVRDALVAFRSERYLRVDDGPPPELRHPVTGFYATRDGRWIQLHANFAHH
HHHHHHHCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEEECCCCEEEEECCHHHH
LHGILDLLDCGERPADVAAAIRTWDGAALDTALADAGLCAALIRTPDEWAAHEQARAIAA
HHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LPLFEIERIGDAPPEPIGGGTAARPLDGVRVLDLTRIIAGPVAGRTLASHGAQTLLVNGP
CCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHCCCCEEEECCC
HLPNIAPLVIDNGRGKRSAWLDLRETAGVDALRALVRDADIFLQAYRPGALAARGFGPQA
CCCCCCEEEEECCCCCCHHHEEHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHH
LAASRPGIVCVSVSAYGHAGPWAARRGFDSLVQSASGIAWREQQAAHADAPRHLPCQALD
HHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHH
HATGYLAAFGAMIALIRRAREGGSWHVRVSLAQTGHWLQSFGAVPDGMQARDLALDDVRD
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
RIDRIASAFGTIDTVRPAERLSATPPSFARPPVPLGSDEARWL
HHHHHHHHHCCHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TPEHALTHLWQRAHGDADALSRAAVTGHDPVLPSTFRIGTLAAATIAAAGLAAAECHRL
CCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
RTGVAQRVDVSVRDALVAFRSERYLRVDDGPPPELRHPVTGFYATRDGRWIQLHANFAHH
HHHHHHHCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEEECCCCEEEEECCHHHH
LHGILDLLDCGERPADVAAAIRTWDGAALDTALADAGLCAALIRTPDEWAAHEQARAIAA
HHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LPLFEIERIGDAPPEPIGGGTAARPLDGVRVLDLTRIIAGPVAGRTLASHGAQTLLVNGP
CCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHCCCCEEEECCC
HLPNIAPLVIDNGRGKRSAWLDLRETAGVDALRALVRDADIFLQAYRPGALAARGFGPQA
CCCCCCEEEEECCCCCCHHHEEHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHH
LAASRPGIVCVSVSAYGHAGPWAARRGFDSLVQSASGIAWREQQAAHADAPRHLPCQALD
HHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHH
HATGYLAAFGAMIALIRRAREGGSWHVRVSLAQTGHWLQSFGAVPDGMQARDLALDDVRD
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
RIDRIASAFGTIDTVRPAERLSATPPSFARPPVPLGSDEARWL
HHHHHHHHHCCHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]