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The map label for this gene is abgR [H]

Identifier: 161523893

GI number: 161523893

Start: 784207

End: 785193

Strand: Reverse

Name: abgR [H]

Synonym: Bmul_0713

Alternate gene names: 161523893

Gene position: 785193-784207 (Counterclockwise)

Preceding gene: 161523898

Following gene: 161523892

Centisome position: 22.77

GC content: 69.91

Gene sequence:

>987_bases
ATGGATCCGCACAGTATCGAAGTGCAGGCCATTCTCGGATACTGTATTTTTGGCGAAAACCCATACCGTTTGCGCATGAC
TTTCGATCTCCGCCAGCTTCGCGCCTTCACCACGATCGTCGCGTGCGGCAGCCTCGGCCGCGCGGCCGAGGCGCTGCACG
TGACGCAGCCCGCGCTGTCGCGCATCCTGAAGCGTCTCGAGGAGCAGGTCGGCGCGCCGCTGTTCGAGCGCCACTCGAAA
GGCGTGCAGCTCACCGCGTTCGGCGAAGCGCTGCTGCCGCATGCGACGCTGCTGCAGCACGAGGCCGAGCACGCGCGCGA
GGAACTCGACGCGATGCGCGGCCTCGCGAAGGGCACGATCAAGGTCGGCGCGGTCGGCAGCATCGTGAGCCTCGTGTTGC
CGATCGCGATCGGCCGCGTGCTCGATCGCTGGCCGAACCTGCGCGTCGAGATTCTCGAAGGCGTATGGGACCGGCTCGCC
GAAGGGCTCTGCAAGCACGAGATCGACCTCGCGCTGTCCGCGCAGGCGGCCGACACCGACGAGATCGTCGCGATTCCCGA
ATGCCGGTGGACCGATCGCAGCCATATCGTTGCCGCGCCGCACCGTCCGCTGCGCGCGCTCGGCCGGCCGCCGACGCTCG
CCGACACGCTCCACGCGCGCTGGGCGCTGCCGCCGCGCGGCACCGCGCCGTTCGACCAGGTACGCGCCACCTTCGATTCG
CATGGACTGCCGCTGCCCGACATCGCGGTCGAGACGCGTTCGGTCACGACGCTGAAGAGCCTCGTCGCGCATGCGGGCTT
CCTCTCGTGGATGCCGGAGCCGATGTTCGGTGCCGAGCAGCGCGCGGGCACGATCGACGCGCTGCCGGTGCGCGAGGTGC
TCGCGCGGCGCATGCTGACCGCGTTCCGGCGCCGTCACGGGATCCTGCCGGGGCCGGCGGCGAAGCTGCTCGAGGAACTC
GTCGCGCTGACGCGCGAAGGCGGCTGA

Upstream 100 bases:

>100_bases
AACTGGCGGAACAGATGGATCACGGCGTCGCGAACGGTGGTCGCGGGCGTGGCGGCGGCGTGCGGTTGACCGGACATGCG
CGGCGTCTCCTCGAGAACGG

Downstream 100 bases:

>100_bases
TTCGATCCATCGCACAGCGCCGGACGCCTCCGGTGCGGCGCACCATCGAAATGCCGGGTTGACGCCTTGACTTTCATTCG
GCCGAATACGATCATTCGCT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MDPHSIEVQAILGYCIFGENPYRLRMTFDLRQLRAFTTIVACGSLGRAAEALHVTQPALSRILKRLEEQVGAPLFERHSK
GVQLTAFGEALLPHATLLQHEAEHAREELDAMRGLAKGTIKVGAVGSIVSLVLPIAIGRVLDRWPNLRVEILEGVWDRLA
EGLCKHEIDLALSAQAADTDEIVAIPECRWTDRSHIVAAPHRPLRALGRPPTLADTLHARWALPPRGTAPFDQVRATFDS
HGLPLPDIAVETRSVTTLKSLVAHAGFLSWMPEPMFGAEQRAGTIDALPVREVLARRMLTAFRRRHGILPGPAAKLLEEL
VALTREGG

Sequences:

>Translated_328_residues
MDPHSIEVQAILGYCIFGENPYRLRMTFDLRQLRAFTTIVACGSLGRAAEALHVTQPALSRILKRLEEQVGAPLFERHSK
GVQLTAFGEALLPHATLLQHEAEHAREELDAMRGLAKGTIKVGAVGSIVSLVLPIAIGRVLDRWPNLRVEILEGVWDRLA
EGLCKHEIDLALSAQAADTDEIVAIPECRWTDRSHIVAAPHRPLRALGRPPTLADTLHARWALPPRGTAPFDQVRATFDS
HGLPLPDIAVETRSVTTLKSLVAHAGFLSWMPEPMFGAEQRAGTIDALPVREVLARRMLTAFRRRHGILPGPAAKLLEEL
VALTREGG
>Mature_328_residues
MDPHSIEVQAILGYCIFGENPYRLRMTFDLRQLRAFTTIVACGSLGRAAEALHVTQPALSRILKRLEEQVGAPLFERHSK
GVQLTAFGEALLPHATLLQHEAEHAREELDAMRGLAKGTIKVGAVGSIVSLVLPIAIGRVLDRWPNLRVEILEGVWDRLA
EGLCKHEIDLALSAQAADTDEIVAIPECRWTDRSHIVAAPHRPLRALGRPPTLADTLHARWALPPRGTAPFDQVRATFDS
HGLPLPDIAVETRSVTTLKSLVAHAGFLSWMPEPMFGAEQRAGTIDALPVREVLARRMLTAFRRRHGILPGPAAKLLEEL
VALTREGG

Specific function: Could be the regulator of the abg operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=282, Percent_Identity=29.4326241134752, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI87081904, Length=262, Percent_Identity=30.9160305343511, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI157672245, Length=277, Percent_Identity=25.2707581227437, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI145693105, Length=161, Percent_Identity=30.4347826086957, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1789506, Length=291, Percent_Identity=25.085910652921, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1788481, Length=282, Percent_Identity=29.4326241134752, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI48994962, Length=160, Percent_Identity=31.25, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788887, Length=156, Percent_Identity=31.4102564102564, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1788297, Length=146, Percent_Identity=30.8219178082192, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1790208, Length=148, Percent_Identity=29.0540540540541, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789639, Length=136, Percent_Identity=25.7352941176471, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1787530, Length=184, Percent_Identity=24.4565217391304, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1786401, Length=184, Percent_Identity=26.6304347826087, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788626, Length=148, Percent_Identity=30.4054054054054, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36002; Mature: 36002

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPHSIEVQAILGYCIFGENPYRLRMTFDLRQLRAFTTIVACGSLGRAAEALHVTQPALS
CCCCCEEHHHHHHHHEECCCCEEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
RILKRLEEQVGAPLFERHSKGVQLTAFGEALLPHATLLQHEAEHAREELDAMRGLAKGTI
HHHHHHHHHHCCCHHHHCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCE
KVGAVGSIVSLVLPIAIGRVLDRWPNLRVEILEGVWDRLAEGLCKHEIDLALSAQAADTD
EECHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCC
EIVAIPECRWTDRSHIVAAPHRPLRALGRPPTLADTLHARWALPPRGTAPFDQVRATFDS
CEEECCCCCCCCCCCEEECCCHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHC
HGLPLPDIAVETRSVTTLKSLVAHAGFLSWMPEPMFGAEQRAGTIDALPVREVLARRMLT
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHH
AFRRRHGILPGPAAKLLEELVALTREGG
HHHHHCCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDPHSIEVQAILGYCIFGENPYRLRMTFDLRQLRAFTTIVACGSLGRAAEALHVTQPALS
CCCCCEEHHHHHHHHEECCCCEEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
RILKRLEEQVGAPLFERHSKGVQLTAFGEALLPHATLLQHEAEHAREELDAMRGLAKGTI
HHHHHHHHHHCCCHHHHCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCE
KVGAVGSIVSLVLPIAIGRVLDRWPNLRVEILEGVWDRLAEGLCKHEIDLALSAQAADTD
EECHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCC
EIVAIPECRWTDRSHIVAAPHRPLRALGRPPTLADTLHARWALPPRGTAPFDQVRATFDS
CEEECCCCCCCCCCCEEECCCHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHC
HGLPLPDIAVETRSVTTLKSLVAHAGFLSWMPEPMFGAEQRAGTIDALPVREVLARRMLT
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHH
AFRRRHGILPGPAAKLLEELVALTREGG
HHHHHCCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9829935 [H]