| Definition | Shigella flexneri 2a str. 2457T, complete genome. |
|---|---|
| Accession | NC_004741 |
| Length | 4,599,354 |
Click here to switch to the map view.
The map label for this gene is yggL
Identifier: 161486441
GI number: 161486441
Start: 3036082
End: 3036408
Strand: Reverse
Name: yggL
Synonym: S3159
Alternate gene names: 161486441
Gene position: 3036408-3036082 (Counterclockwise)
Preceding gene: 30064281
Following gene: 30064279
Centisome position: 66.02
GC content: 48.32
Gene sequence:
>327_bases ATGGCAAAGAACCGTAGCCGTCGTCTGCGTAAAAAAATGCACATCGACGAATTCCAGGAATTAGGATTTTCGGTGGCATG GCGATTCCCGGAAGGTACATCGGAAGAACAGATTGATAAAATCGTTGATGACTTTATTAACGAGGTTATCGAACCGAACA AACTGGCCTTTGACGGCAGCGGTTATCTGGCCTGGGAAGGTCTGATCTGCATGCAGGAAATCGGCAAATGCACCGAAGAA CATCAGGCGATTGTGCGTAAGTGGCTGGAAGAGTGCAAACTGGATGAGGTACGCACCAGCGAACTTTTCGACGTTTGGTG GGACTAA
Upstream 100 bases:
>100_bases ACGTACCGCGTCCGGCATCACGTCCGGTGACGAAATTTGAACAACGTGGTCATCGTCTTGGTCACGGAGTATGGGACTTA ATGTTCGAGAGGGTGAAATA
Downstream 100 bases:
>100_bases GAAAGCATACGGGCGATGACAAATGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACAGAGATGCACGATCGAGTA GGCGGGATAAGGCGTTTACG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 108; Mature: 107
Protein sequence:
>108_residues MAKNRSRRLRKKMHIDEFQELGFSVAWRFPEGTSEEQIDKIVDDFINEVIEPNKLAFDGSGYLAWEGLICMQEIGKCTEE HQAIVRKWLEECKLDEVRTSELFDVWWD
Sequences:
>Translated_108_residues MAKNRSRRLRKKMHIDEFQELGFSVAWRFPEGTSEEQIDKIVDDFINEVIEPNKLAFDGSGYLAWEGLICMQEIGKCTEE HQAIVRKWLEECKLDEVRTSELFDVWWD >Mature_107_residues AKNRSRRLRKKMHIDEFQELGFSVAWRFPEGTSEEQIDKIVDDFINEVIEPNKLAFDGSGYLAWEGLICMQEIGKCTEEH QAIVRKWLEECKLDEVRTSELFDVWWD
Specific function: Unknown
COG id: COG3171
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae HI_0341 [H]
Homologues:
Organism=Escherichia coli, GI87082190, Length=108, Percent_Identity=98.1481481481482, Blast_Score=217, Evalue=1e-58,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007416 [H]
Pfam domain/function: PF04320 DUF469 [H]
EC number: NA
Molecular weight: Translated: 12840; Mature: 12708
Theoretical pI: Translated: 4.50; Mature: 4.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKNRSRRLRKKMHIDEFQELGFSVAWRFPEGTSEEQIDKIVDDFINEVIEPNKLAFDGS CCCCHHHHHHHHHCHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEECCC GYLAWEGLICMQEIGKCTEEHQAIVRKWLEECKLDEVRTSELFDVWWD CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC >Mature Secondary Structure AKNRSRRLRKKMHIDEFQELGFSVAWRFPEGTSEEQIDKIVDDFINEVIEPNKLAFDGS CCCHHHHHHHHHCHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEECCC GYLAWEGLICMQEIGKCTEEHQAIVRKWLEECKLDEVRTSELFDVWWD CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503; 2001994 [H]