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The map label for this gene is yifB [H]

Identifier: 160902635

GI number: 160902635

Start: 1259750

End: 1261249

Strand: Direct

Name: yifB [H]

Synonym: Pmob_1175

Alternate gene names: 160902635

Gene position: 1259750-1261249 (Clockwise)

Preceding gene: 160902634

Following gene: 160902636

Centisome position: 58.07

GC content: 36.93

Gene sequence:

>1500_bases
ATGAAATATTCTAAGATAAAAACTGGTTGCATAGACGGGTTTAAAGTAGAAAATATCTTAGTAGAAATCGACGTAAACTC
CCGTTCTACCCAACAGACATTCAAAATAGTAGGCATGCCCTCCACATCAGTTTTAGAAAGTGAGAAACGAGTTACAAGTG
CCATTAGAAATACTGGGTTTACAATTCCTAACGGATCGATAGTTGCGAATCTTTCACCCACCTCTATGAGAAAAGACGGC
TCACATTTTGATTTACCAATTGCCGTTTCCTTGTTGGAGGCGTCAGGTCAGATAAAAGAATTAAGTGAAGATTACTATAT
ATTTGGTGAACTTGGTTTGAATGGAGAAGTTAGACCAGTTTCTGGGATATCTCTTTTCTTGATGTATATAAAAGAAAGAA
ATCAACAAGCAAAATTCATAATTCCACGGGGAAATCAGGGGGAAAGTAAATTTGTAGAAAAGAACGAGGTTATCGTTATA
GATAGCTTGAAAGATATCGAAAATATATCGTTAGGTATTTTGGATGATTACTCTCCAAAGTATGAGGATATTGTACAACC
ATCTTACAACTTAGATTTTCGTGAAATCAAAGGTCAAATATTTGCCAAAAGGGGAATAGAGATAGCAGCCAGTGGATTTC
ACAATGTCTTAATGAGAGGATCTCCCGGTTCAGGAAAAACAATGATAGCTAAAAGGGTTCCAACAATATTACCAGATATG
ACGAGGGAAGAAATCATCGAATCTACGATGATTTATTCAGTTGCTGGATATATGAACACGATAATTGATAAAAGGCCCTT
CAGATCACCTCACCACACAGCCTCGACAGCCTCAATAATAGGGGGAGGAGCCGTTCCGAAACCTGGTGAAATAAGCTTGG
CTCACAATGGTGTGTTATTCATGGATGAGTTCCCCGAGTACCGTACGGATGTAATAGAATCTCTAAGACAGCCTTTAGAA
GACGGAGAAGTGACGGTAACAAGAGCAAAATCCGTTGCTAATTTTCCTGCAAGGTTCATGCTTATAGCATCTCAAAATCC
TTGTCCATGTGGATATTATGGAGATAAGGAGATAGAATGTACGTGTAGTTTGAACCAGATCTTAAATTACAACAGAAAAA
TATCAGGACCCATATTGGACAGAATAGATATTAGAATAGATACACCAAGGGTAAAAATAGATGAACTCATGTCCAAAGAA
GACGGAGAAAGCTCCGAAAAGATTAAAGAAAGAGTTTCAAAAGCTTCCCAAATACAGATAAAAAGGCAAAATAAATTGAA
TGGAAAACTTAGCAATAAAGAGCTGAAGAAATTTGCTGTTCTTAGTGAAAAAGCGGAAGACTTTCTAAAACAAGCAGCTA
TCAATTTAAAATTAACCGCTAGATCGGTAAACAGGGTAGTAAGAATTTCACGAACTATAGCTGACACTTTTGATTCAAAA
AATGTGGAAATAAGTCATGTTTCGGAAGCCCTGAATTACAGAGGGAGAAAAATCATATGA

Upstream 100 bases:

>100_bases
TTTTAACTTTTACTATCATCATTTTTATCACACAAAAATTGGGTAAGGAAAAGTTAGAAAGTGATAAGTGAAATTAAGTA
ATGTACAAAAAGGGGGAAAA

Downstream 100 bases:

>100_bases
GAAAAATATCTTCTTTTTTTCTGTTACTTTTATTGGTATTAAGTGCAGTTTATGCTAATTCACAAGAGTTAATAACAATA
CCAGATATAGAAAACCTAGA

Product: Mg chelatase subunit ChlI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 499; Mature: 499

Protein sequence:

>499_residues
MKYSKIKTGCIDGFKVENILVEIDVNSRSTQQTFKIVGMPSTSVLESEKRVTSAIRNTGFTIPNGSIVANLSPTSMRKDG
SHFDLPIAVSLLEASGQIKELSEDYYIFGELGLNGEVRPVSGISLFLMYIKERNQQAKFIIPRGNQGESKFVEKNEVIVI
DSLKDIENISLGILDDYSPKYEDIVQPSYNLDFREIKGQIFAKRGIEIAASGFHNVLMRGSPGSGKTMIAKRVPTILPDM
TREEIIESTMIYSVAGYMNTIIDKRPFRSPHHTASTASIIGGGAVPKPGEISLAHNGVLFMDEFPEYRTDVIESLRQPLE
DGEVTVTRAKSVANFPARFMLIASQNPCPCGYYGDKEIECTCSLNQILNYNRKISGPILDRIDIRIDTPRVKIDELMSKE
DGESSEKIKERVSKASQIQIKRQNKLNGKLSNKELKKFAVLSEKAEDFLKQAAINLKLTARSVNRVVRISRTIADTFDSK
NVEISHVSEALNYRGRKII

Sequences:

>Translated_499_residues
MKYSKIKTGCIDGFKVENILVEIDVNSRSTQQTFKIVGMPSTSVLESEKRVTSAIRNTGFTIPNGSIVANLSPTSMRKDG
SHFDLPIAVSLLEASGQIKELSEDYYIFGELGLNGEVRPVSGISLFLMYIKERNQQAKFIIPRGNQGESKFVEKNEVIVI
DSLKDIENISLGILDDYSPKYEDIVQPSYNLDFREIKGQIFAKRGIEIAASGFHNVLMRGSPGSGKTMIAKRVPTILPDM
TREEIIESTMIYSVAGYMNTIIDKRPFRSPHHTASTASIIGGGAVPKPGEISLAHNGVLFMDEFPEYRTDVIESLRQPLE
DGEVTVTRAKSVANFPARFMLIASQNPCPCGYYGDKEIECTCSLNQILNYNRKISGPILDRIDIRIDTPRVKIDELMSKE
DGESSEKIKERVSKASQIQIKRQNKLNGKLSNKELKKFAVLSEKAEDFLKQAAINLKLTARSVNRVVRISRTIADTFDSK
NVEISHVSEALNYRGRKII
>Mature_499_residues
MKYSKIKTGCIDGFKVENILVEIDVNSRSTQQTFKIVGMPSTSVLESEKRVTSAIRNTGFTIPNGSIVANLSPTSMRKDG
SHFDLPIAVSLLEASGQIKELSEDYYIFGELGLNGEVRPVSGISLFLMYIKERNQQAKFIIPRGNQGESKFVEKNEVIVI
DSLKDIENISLGILDDYSPKYEDIVQPSYNLDFREIKGQIFAKRGIEIAASGFHNVLMRGSPGSGKTMIAKRVPTILPDM
TREEIIESTMIYSVAGYMNTIIDKRPFRSPHHTASTASIIGGGAVPKPGEISLAHNGVLFMDEFPEYRTDVIESLRQPLE
DGEVTVTRAKSVANFPARFMLIASQNPCPCGYYGDKEIECTCSLNQILNYNRKISGPILDRIDIRIDTPRVKIDELMSKE
DGESSEKIKERVSKASQIQIKRQNKLNGKLSNKELKKFAVLSEKAEDFLKQAAINLKLTARSVNRVVRISRTIADTFDSK
NVEISHVSEALNYRGRKII

Specific function: Unknown

COG id: COG0606

COG function: function code O; Predicted ATPase with chaperone activity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Mg-chelatase subunits D/I family. ComM subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693202, Length=501, Percent_Identity=39.1217564870259, Blast_Score=349, Evalue=2e-97,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR004482
- InterPro:   IPR000523
- InterPro:   IPR020568
- InterPro:   IPR002078 [H]

Pfam domain/function: PF01078 Mg_chelatase [H]

EC number: NA

Molecular weight: Translated: 55686; Mature: 55686

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: PS50051 MCM_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYSKIKTGCIDGFKVENILVEIDVNSRSTQQTFKIVGMPSTSVLESEKRVTSAIRNTGF
CCCCCCCCCCCCCEEEEEEEEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCC
TIPNGSIVANLSPTSMRKDGSHFDLPIAVSLLEASGQIKELSEDYYIFGELGLNGEVRPV
CCCCCCEEEECCCHHHCCCCCCCCCHHHEEEHHCCCCHHHCCCCEEEEEEECCCCCCCCC
SGISLFLMYIKERNQQAKFIIPRGNQGESKFVEKNEVIVIDSLKDIENISLGILDDYSPK
CHHHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCCCEEEEECCCCCCCCEEEEECCCCCC
YEDIVQPSYNLDFREIKGQIFAKRGIEIAASGFHNVLMRGSPGSGKTMIAKRVPTILPDM
HHHHCCCCCCCCHHHHHHHHHHHCCCEEEECCCHHEEEECCCCCCCEEHHHHCCHHCCCC
TREEIIESTMIYSVAGYMNTIIDKRPFRSPHHTASTASIIGGGAVPKPGEISLAHNGVLF
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHEECCCCCCCCCCEEEECCCEEE
MDEFPEYRTDVIESLRQPLEDGEVTVTRAKSVANFPARFMLIASQNPCPCGYYGDKEIEC
ECCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCEEEEEEECCCCCCCCCCCCCCEEE
TCSLNQILNYNRKISGPILDRIDIRIDTPRVKIDELMSKEDGESSEKIKERVSKASQIQI
EEEHHHHHCCCCCCCCCCEEEEEEEEECCCEEHHHHHCCCCCCHHHHHHHHHHHHHHEEE
KRQNKLNGKLSNKELKKFAVLSEKAEDFLKQAAINLKLTARSVNRVVRISRTIADTFDSK
EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHHHHHHHHHHHHCCCC
NVEISHVSEALNYRGRKII
CEEHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKYSKIKTGCIDGFKVENILVEIDVNSRSTQQTFKIVGMPSTSVLESEKRVTSAIRNTGF
CCCCCCCCCCCCCEEEEEEEEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCC
TIPNGSIVANLSPTSMRKDGSHFDLPIAVSLLEASGQIKELSEDYYIFGELGLNGEVRPV
CCCCCCEEEECCCHHHCCCCCCCCCHHHEEEHHCCCCHHHCCCCEEEEEEECCCCCCCCC
SGISLFLMYIKERNQQAKFIIPRGNQGESKFVEKNEVIVIDSLKDIENISLGILDDYSPK
CHHHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCCCEEEEECCCCCCCCEEEEECCCCCC
YEDIVQPSYNLDFREIKGQIFAKRGIEIAASGFHNVLMRGSPGSGKTMIAKRVPTILPDM
HHHHCCCCCCCCHHHHHHHHHHHCCCEEEECCCHHEEEECCCCCCCEEHHHHCCHHCCCC
TREEIIESTMIYSVAGYMNTIIDKRPFRSPHHTASTASIIGGGAVPKPGEISLAHNGVLF
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHEECCCCCCCCCCEEEECCCEEE
MDEFPEYRTDVIESLRQPLEDGEVTVTRAKSVANFPARFMLIASQNPCPCGYYGDKEIEC
ECCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCEEEEEEECCCCCCCCCCCCCCEEE
TCSLNQILNYNRKISGPILDRIDIRIDTPRVKIDELMSKEDGESSEKIKERVSKASQIQI
EEEHHHHHCCCCCCCCCCEEEEEEEEECCCEEHHHHHCCCCCCHHHHHHHHHHHHHHEEE
KRQNKLNGKLSNKELKKFAVLSEKAEDFLKQAAINLKLTARSVNRVVRISRTIADTFDSK
EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHHHHHHHHHHHHCCCC
NVEISHVSEALNYRGRKII
CEEHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]