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The map label for this gene is opuCB [H]

Identifier: 160902586

GI number: 160902586

Start: 1205395

End: 1206051

Strand: Direct

Name: opuCB [H]

Synonym: Pmob_1125

Alternate gene names: 160902586

Gene position: 1205395-1206051 (Clockwise)

Preceding gene: 160902583

Following gene: 160902587

Centisome position: 55.56

GC content: 35.46

Gene sequence:

>657_bases
GTGGAATTCTTCGAATATATTTCTAGTAGTTCAAGTATCATAATTAGAGAGTTTCTAAATCATTTGAAAATCATAGGTTT
ATCTTTACCTTTTTCCATAGGTATAGGAGTACCTACAGGAATTTTTATATCAAGGCATCCTAAAGCCGCAAACATAGTTA
TCTACATTGCCAGTATTCTGATGACTATCCCAAGTTTGGCCCTTTTTGGGATTATGGTTGTAATTTTGTCTCCTTTTGGA
GCTGGCTTAGGGGTTACACCTGCCGTGATTGCTCTGATTATATACTCTTTACTTCCAATTATAAGAAATACATTAACAGC
TATTCAAGCCCTAGACCCACAAATGATAGAGGCTGCTAAAGGAATGGGAATGACCGAATCTCAAATATTATTCAAGATCC
GTTTACCTTTATCGATCCCTACTATAATGTCTGGGGTAAGAAATGCTGTAGTAATGGGAGTCGGCGTTGCTACTTTAGGA
TATTTTGTTGCTTCAGGAGGATTAGGATACTTTATTTTTGCTGGGTTAAGCAGGTCACGGTATCCAATGGTAATAACAGG
GGTAATATTGGTCTCAATTTTGGGTGTTTTAGCTAATTATCTTTTACTAAAATTTGAGGATTTAATTACTCCAAAGGGTC
TTAAAATTAAAGAATAA

Upstream 100 bases:

>100_bases
ATTGTAACTTACTTATATTCTAAAAAGATTAAAAATGTGTTATAATATTTATCGCAATGATGAACAAAATAATTTACAAT
GAGAAGAAGGGAGTGAAACA

Downstream 100 bases:

>100_bases
GATAAAAATCATAGGAGGAACATTAAAATGGCAATAAAATTAGTTGATCTCACAAAAAAGTATGGTGATTTTACCGCCGT
TAATAATTTAAATATCGAAT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MEFFEYISSSSSIIIREFLNHLKIIGLSLPFSIGIGVPTGIFISRHPKAANIVIYIASILMTIPSLALFGIMVVILSPFG
AGLGVTPAVIALIIYSLLPIIRNTLTAIQALDPQMIEAAKGMGMTESQILFKIRLPLSIPTIMSGVRNAVVMGVGVATLG
YFVASGGLGYFIFAGLSRSRYPMVITGVILVSILGVLANYLLLKFEDLITPKGLKIKE

Sequences:

>Translated_218_residues
MEFFEYISSSSSIIIREFLNHLKIIGLSLPFSIGIGVPTGIFISRHPKAANIVIYIASILMTIPSLALFGIMVVILSPFG
AGLGVTPAVIALIIYSLLPIIRNTLTAIQALDPQMIEAAKGMGMTESQILFKIRLPLSIPTIMSGVRNAVVMGVGVATLG
YFVASGGLGYFIFAGLSRSRYPMVITGVILVSILGVLANYLLLKFEDLITPKGLKIKE
>Mature_218_residues
MEFFEYISSSSSIIIREFLNHLKIIGLSLPFSIGIGVPTGIFISRHPKAANIVIYIASILMTIPSLALFGIMVVILSPFG
AGLGVTPAVIALIIYSLLPIIRNTLTAIQALDPQMIEAAKGMGMTESQILFKIRLPLSIPTIMSGVRNAVVMGVGVATLG
YFVASGGLGYFIFAGLSRSRYPMVITGVILVSILGVLANYLLLKFEDLITPKGLKIKE

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine and choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788449, Length=194, Percent_Identity=37.6288659793814, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1788451, Length=226, Percent_Identity=32.3008849557522, Blast_Score=106, Evalue=9e-25,
Organism=Escherichia coli, GI1789033, Length=171, Percent_Identity=32.7485380116959, Blast_Score=97, Evalue=6e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23358; Mature: 23358

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFFEYISSSSSIIIREFLNHLKIIGLSLPFSIGIGVPTGIFISRHPKAANIVIYIASIL
CCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEECCCCCCCCEEECCCCHHHHHHHHHHHH
MTIPSLALFGIMVVILSPFGAGLGVTPAVIALIIYSLLPIIRNTLTAIQALDPQMIEAAK
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
GMGMTESQILFKIRLPLSIPTIMSGVRNAVVMGVGVATLGYFVASGGLGYFIFAGLSRSR
CCCCCHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCC
YPMVITGVILVSILGVLANYLLLKFEDLITPKGLKIKE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECC
>Mature Secondary Structure
MEFFEYISSSSSIIIREFLNHLKIIGLSLPFSIGIGVPTGIFISRHPKAANIVIYIASIL
CCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEECCCCCCCCEEECCCCHHHHHHHHHHHH
MTIPSLALFGIMVVILSPFGAGLGVTPAVIALIIYSLLPIIRNTLTAIQALDPQMIEAAK
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
GMGMTESQILFKIRLPLSIPTIMSGVRNAVVMGVGVATLGYFVASGGLGYFIFAGLSRSR
CCCCCHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCC
YPMVITGVILVSILGVLANYLLLKFEDLITPKGLKIKE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377 [H]