Click here to switch to the map view.

The map label for this gene is nrdD [H]

Identifier: 160902442

GI number: 160902442

Start: 1039411

End: 1041303

Strand: Direct

Name: nrdD [H]

Synonym: Pmob_0978

Alternate gene names: 160902442

Gene position: 1039411-1041303 (Clockwise)

Preceding gene: 160902437

Following gene: 160902443

Centisome position: 47.91

GC content: 36.19

Gene sequence:

>1893_bases
ATGGATTTAGATTCTATCAAAGACAGTTTGTTGTTGAAACCAGTAACTATAAATAAACGCCAAGAAGGAGAATTAAGGAA
AGAAAATTTAATTAAAGAACAAAAAAAACGCAGTGTAGAGAATTATTCAAATGCAGAAAAAATGAGTTTTGATGTAAGGA
AAACGATAAATGAATATATCGAAATGAAAGACTGGCGAACCAACGAAAATTCAAACACTACTTATTCTTATCCGGGTTTG
TACTTACACTTAGCTGGGAGCGCTTTAGCAAATTATGTGTTAAACGAAATATACCCTTCAGAAATATCACAGGCTCATTC
ATCAGGTGCTTTACATATTCATGACTTATCCCATGGTATAGTCGCTTACTGTGCCGGATGGTCACTTATGGATCTAATAA
AGAAAGGTTTTGGGGGTGTAGAAGGGAAAATCAATGCCAAGCCTGCCAAACACCTTTCCGCCTTAACTGGACAAATGGTG
AATTTTTTGGGTGTTATGCAAATGGAATTTGCAGGTGCCCAGGCTTTTAACTCTGTAGACACTTTGCTCGCACCCTTTGT
AAGAGCGGATAAATTAAGTTATGATGAGGTGAAACAGTTCATTCAACAAATGGTCTTCGCAATGAACGTACCTTCTAGAT
GGGGATCGCAACCACCTTTTATAAACTTTACACTTGATTGGACAGTTCCTGATGATCTAAAAAACGAACCTGCAATTGTT
GGCGGAAAGGAAATTGGAGTATATGGAGATTATCAAAAAGAGATGAATATGGTGAACAAAGCCTTCTTAGAAACTATGCT
TGAAGGAGATGCAAATGGCAGAATTTTTTCTTTCCCCATCCCAACTTACAATATTACCAAAGAGTTCGATTGGGAAGGTG
AAAATGTCGATTTATTGATGGAAGCTACAGCCAAATATGGGTTACCCTACTTCCAAAACTTCATCTCAAGTTCATTGAAC
CCGGGCGATGTAAGAAGTATGTGCTGCAGGTTACAACTCGATCTAAGGGAATTAAAAAATAGAGGTGGGGGCCTTTTTGG
CTCAGCAGACAAAACAGGTTCCATAGGTGTAGTAACAATCAATCTTCCTCGAATAGGATATATATCTAAAACTAAAGAAG
AATATTTTGAAAACTTAAAATCAATGATGGATTTGGCTAAAACTTCTTTAGAAATAAAAAGATACGTGATAGAAGAAAAT
CTTTCCAAAAATCTTATGCCCTATACAAAAGTTTATTTGGGCCATTTCAACAACCATTTTTCAACCATAGGAATAATAGG
AATGCATGAGTCACTTTTAAATTTCATGGGGAGAGGTATTGAAACCAACGAAGGAAGAGAATTTGCAATAGAAGTTTTGA
ATTATATGAGATCAGTTTTGAAAGATTATCAAGAAGAAACTGGAAATTTATACAACCTAGAAGCAACACCTGCAGAAGGA
GCATCTTATCGGTTAGCTAAAAAAGACAAACAACTTTATCCTGACATAATAACTTCAGGTGACGATGAACCGTACTACAC
AAATTCGACATTTTTACCAGTTGGAATCACTGAAGACCCGTTTGAAGTACTTGAGCATCAAGCACCATTACAAACTTTAT
ACACATCCGGTACAGTAGTACATATCTTTTTGCAGGAAAAACCCCAAGCAAGTACTTTAAAAACTTTTATTAAAAAAGCT
TTTAGTCAATACCCAGTTCCATATATGACTATAACGCCAACTTTTTCCATTTGCGAAACCCATGGTTACATTGCAGGAGA
ACATTTTGAATGTCCCATTTGTGGCAAACCTACCGAAGTTTATTCAAGGGTTGTTGGATATTACAGGCCTGTGAAAAGTT
GGAATAAAGGAAAGCAACAAGAATTCAAAGAAAGGCTTGAGTACAGAGTATGA

Upstream 100 bases:

>100_bases
TGACAAATACAATATACAGTGGTATGATATAAAATATAACACAATAAATTGAGTCTTTTGTAAAACATTTTGACATTTAA
CTATAAGGGGGTTGAAAAAT

Downstream 100 bases:

>100_bases
AAATCGCATCTATGCAAAAAGTAAGCTTTATTGATTACCCGGACAAAATAGCTGCCGTGCTATTTTGTCCCTATTGTAAT
CTAAGATGCCCCTATTGCCA

Product: anaerobic ribonucleoside triphosphate reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 630; Mature: 630

Protein sequence:

>630_residues
MDLDSIKDSLLLKPVTINKRQEGELRKENLIKEQKKRSVENYSNAEKMSFDVRKTINEYIEMKDWRTNENSNTTYSYPGL
YLHLAGSALANYVLNEIYPSEISQAHSSGALHIHDLSHGIVAYCAGWSLMDLIKKGFGGVEGKINAKPAKHLSALTGQMV
NFLGVMQMEFAGAQAFNSVDTLLAPFVRADKLSYDEVKQFIQQMVFAMNVPSRWGSQPPFINFTLDWTVPDDLKNEPAIV
GGKEIGVYGDYQKEMNMVNKAFLETMLEGDANGRIFSFPIPTYNITKEFDWEGENVDLLMEATAKYGLPYFQNFISSSLN
PGDVRSMCCRLQLDLRELKNRGGGLFGSADKTGSIGVVTINLPRIGYISKTKEEYFENLKSMMDLAKTSLEIKRYVIEEN
LSKNLMPYTKVYLGHFNNHFSTIGIIGMHESLLNFMGRGIETNEGREFAIEVLNYMRSVLKDYQEETGNLYNLEATPAEG
ASYRLAKKDKQLYPDIITSGDDEPYYTNSTFLPVGITEDPFEVLEHQAPLQTLYTSGTVVHIFLQEKPQASTLKTFIKKA
FSQYPVPYMTITPTFSICETHGYIAGEHFECPICGKPTEVYSRVVGYYRPVKSWNKGKQQEFKERLEYRV

Sequences:

>Translated_630_residues
MDLDSIKDSLLLKPVTINKRQEGELRKENLIKEQKKRSVENYSNAEKMSFDVRKTINEYIEMKDWRTNENSNTTYSYPGL
YLHLAGSALANYVLNEIYPSEISQAHSSGALHIHDLSHGIVAYCAGWSLMDLIKKGFGGVEGKINAKPAKHLSALTGQMV
NFLGVMQMEFAGAQAFNSVDTLLAPFVRADKLSYDEVKQFIQQMVFAMNVPSRWGSQPPFINFTLDWTVPDDLKNEPAIV
GGKEIGVYGDYQKEMNMVNKAFLETMLEGDANGRIFSFPIPTYNITKEFDWEGENVDLLMEATAKYGLPYFQNFISSSLN
PGDVRSMCCRLQLDLRELKNRGGGLFGSADKTGSIGVVTINLPRIGYISKTKEEYFENLKSMMDLAKTSLEIKRYVIEEN
LSKNLMPYTKVYLGHFNNHFSTIGIIGMHESLLNFMGRGIETNEGREFAIEVLNYMRSVLKDYQEETGNLYNLEATPAEG
ASYRLAKKDKQLYPDIITSGDDEPYYTNSTFLPVGITEDPFEVLEHQAPLQTLYTSGTVVHIFLQEKPQASTLKTFIKKA
FSQYPVPYMTITPTFSICETHGYIAGEHFECPICGKPTEVYSRVVGYYRPVKSWNKGKQQEFKERLEYRV
>Mature_630_residues
MDLDSIKDSLLLKPVTINKRQEGELRKENLIKEQKKRSVENYSNAEKMSFDVRKTINEYIEMKDWRTNENSNTTYSYPGL
YLHLAGSALANYVLNEIYPSEISQAHSSGALHIHDLSHGIVAYCAGWSLMDLIKKGFGGVEGKINAKPAKHLSALTGQMV
NFLGVMQMEFAGAQAFNSVDTLLAPFVRADKLSYDEVKQFIQQMVFAMNVPSRWGSQPPFINFTLDWTVPDDLKNEPAIV
GGKEIGVYGDYQKEMNMVNKAFLETMLEGDANGRIFSFPIPTYNITKEFDWEGENVDLLMEATAKYGLPYFQNFISSSLN
PGDVRSMCCRLQLDLRELKNRGGGLFGSADKTGSIGVVTINLPRIGYISKTKEEYFENLKSMMDLAKTSLEIKRYVIEEN
LSKNLMPYTKVYLGHFNNHFSTIGIIGMHESLLNFMGRGIETNEGREFAIEVLNYMRSVLKDYQEETGNLYNLEATPAEG
ASYRLAKKDKQLYPDIITSGDDEPYYTNSTFLPVGITEDPFEVLEHQAPLQTLYTSGTVVHIFLQEKPQASTLKTFIKKA
FSQYPVPYMTITPTFSICETHGYIAGEHFECPICGKPTEVYSRVVGYYRPVKSWNKGKQQEFKERLEYRV

Specific function: Unknown

COG id: COG1328

COG function: function code F; Oxygen-sensitive ribonucleoside-triphosphate reductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 glycine radical domain [H]

Homologues:

Organism=Escherichia coli, GI1790686, Length=624, Percent_Identity=24.0384615384615, Blast_Score=118, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005144
- InterPro:   IPR001150
- InterPro:   IPR019777
- InterPro:   IPR012833 [H]

Pfam domain/function: PF03477 ATP-cone; PF01228 Gly_radical [H]

EC number: =1.17.4.2 [H]

Molecular weight: Translated: 71496; Mature: 71496

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLDSIKDSLLLKPVTINKRQEGELRKENLIKEQKKRSVENYSNAEKMSFDVRKTINEYI
CCHHHHHHHHEECCEECCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
EMKDWRTNENSNTTYSYPGLYLHLAGSALANYVLNEIYPSEISQAHSSGALHIHDLSHGI
HHCCCCCCCCCCCEEECCCEEEEEHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEECCCCH
VAYCAGWSLMDLIKKGFGGVEGKINAKPAKHLSALTGQMVNFLGVMQMEFAGAQAFNSVD
HHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLLAPFVRADKLSYDEVKQFIQQMVFAMNVPSRWGSQPPFINFTLDWTVPDDLKNEPAIV
HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHCCCCCCEEEEEEEECCCCCCCCCCCEE
GGKEIGVYGDYQKEMNMVNKAFLETMLEGDANGRIFSFPIPTYNITKEFDWEGENVDLLM
CCCEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECCCCCCCCEEEE
EATAKYGLPYFQNFISSSLNPGDVRSMCCRLQLDLRELKNRGGGLFGSADKTGSIGVVTI
EHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEE
NLPRIGYISKTKEEYFENLKSMMDLAKTSLEIKRYVIEENLSKNLMPYTKVYLGHFNNHF
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC
STIGIIGMHESLLNFMGRGIETNEGREFAIEVLNYMRSVLKDYQEETGNLYNLEATPAEG
CEEEEEEHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
ASYRLAKKDKQLYPDIITSGDDEPYYTNSTFLPVGITEDPFEVLEHQAPLQTLYTSGTVV
CCEEHHHHHHHHCCHHHCCCCCCCEECCCEEEEECCCCCHHHHHHCCCCHHHHHCCCCEE
HIFLQEKPQASTLKTFIKKAFSQYPVPYMTITPTFSICETHGYIAGEHFECPICGKPTEV
EEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHCCCCCCCCCEECCCCCCCHHH
YSRVVGYYRPVKSWNKGKQQEFKERLEYRV
HHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MDLDSIKDSLLLKPVTINKRQEGELRKENLIKEQKKRSVENYSNAEKMSFDVRKTINEYI
CCHHHHHHHHEECCEECCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
EMKDWRTNENSNTTYSYPGLYLHLAGSALANYVLNEIYPSEISQAHSSGALHIHDLSHGI
HHCCCCCCCCCCCEEECCCEEEEEHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEECCCCH
VAYCAGWSLMDLIKKGFGGVEGKINAKPAKHLSALTGQMVNFLGVMQMEFAGAQAFNSVD
HHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLLAPFVRADKLSYDEVKQFIQQMVFAMNVPSRWGSQPPFINFTLDWTVPDDLKNEPAIV
HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHCCCCCCEEEEEEEECCCCCCCCCCCEE
GGKEIGVYGDYQKEMNMVNKAFLETMLEGDANGRIFSFPIPTYNITKEFDWEGENVDLLM
CCCEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECCCCCCCCEEEE
EATAKYGLPYFQNFISSSLNPGDVRSMCCRLQLDLRELKNRGGGLFGSADKTGSIGVVTI
EHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEE
NLPRIGYISKTKEEYFENLKSMMDLAKTSLEIKRYVIEENLSKNLMPYTKVYLGHFNNHF
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC
STIGIIGMHESLLNFMGRGIETNEGREFAIEVLNYMRSVLKDYQEETGNLYNLEATPAEG
CEEEEEEHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
ASYRLAKKDKQLYPDIITSGDDEPYYTNSTFLPVGITEDPFEVLEHQAPLQTLYTSGTVV
CCEEHHHHHHHHCCHHHCCCCCCCEECCCEEEEECCCCCHHHHHHCCCCHHHHHCCCCEE
HIFLQEKPQASTLKTFIKKAFSQYPVPYMTITPTFSICETHGYIAGEHFECPICGKPTEV
EEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHCCCCCCCCCEECCCCCCCHHH
YSRVVGYYRPVKSWNKGKQQEFKERLEYRV
HHHHHHHHHHHHHCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]