Click here to switch to the map view.

The map label for this gene is yfbE [C]

Identifier: 160902402

GI number: 160902402

Start: 991268

End: 992365

Strand: Direct

Name: yfbE [C]

Synonym: Pmob_0937

Alternate gene names: 160902402

Gene position: 991268-992365 (Clockwise)

Preceding gene: 160902401

Following gene: 160902403

Centisome position: 45.69

GC content: 29.96

Gene sequence:

>1098_bases
ATGAATAAAAAAATTTTGGTTACTAAATCATCTATTCCTGATTTAGATGAATATGTTGAAGAACTCAAAGACCTATGGGA
AACTCGTTGGTTAACTAACATGGGAGTTAAACATCAATTATTAGAAGAAAAACTGAAGGAATATTTAGATACGGAAAACA
TTACACTTTTTGTTAATGGGCACTTAGCCCTGGAAAGCATAATCCAAGCAATGGATTTAAAAGGAGAAGTTATAACTACT
CCATTTACTTTTATTTCTACTACCCATGCAATAGTTAGAAGTGGTTTGACTCCAGTATTCTGTGATATTAGTTATGATGA
CTATACAATAGATGTATCTAAAATAGAAGATTTAATAACAGAAAGAACATCAGCTATAATACCAGTTCATGTATATGGTA
ACATTTGTGATTATCAGGAAATAGATAGAATAGCAAAAAAGTACAATTTAATAGTTATTTACGATGCTGCTCATGCTTTT
GGTGAAAGAATTGATGGAAGAAATGTATCAAATCTTGGAGACGCCTCAATATTTAGTTTTCATGCTACAAAAGTATTCAA
TACTATTGAAGGTGGAGCCGTTACATATAAAAAGAACGAATTAAAAGAAAAGCTAGATCAAATAAAAAATTTTGGAATTA
CGGGGCCAGAAAGCATTGAATCTGTGGGCGGAAATGCCAAAATGAATGAATTTCAAGCTGCCATGGGTATATGCAATTTA
AGGCATGTAGATGATGAAATAGAAAAGAGAAAAAAAGTAGTTGAAAGGTATAGAGAAAGACTTTCAGATATTAAGGGTAT
AAAACTTTATGAAGAAAAAGAAAATGTCAAAAGTAATTATGCATACTTTCCTGTTTTATTTGATGGTTATAAGGCAACTA
GAGATGAAATATTTGAAGAGCTAAAGAAAAATAATATTTTTGCTAGAAAATACTTTTATCCACTAACTAACGATGCACAG
TGCTATAAAAATAAATTCAACGTAGAAGAAACACCTACTGCAAAATATGTCTCGGAAAGAATTTTAACCTTGCCTTTATA
TGCTGATTTAGAATTATCAGATGTAGATCGAATATGTGATATTATAAGAAATATTTGA

Upstream 100 bases:

>100_bases
CAATATATGCAGGTAATCCGATAAAAAAAATAAAAGGCAGAAGTAAGAATTTAATAGAATTAGAAGAACAATTTTTAAAT
GAAAAAGAGTGATTAAATGA

Downstream 100 bases:

>100_bases
ATGAGGTGATATTGTGAAAGGCATAATCCTTGCAGGGGGAAATGGCACAAGACTTTACCCTATCACTAAAGGGCTAAGTA
AACAACTTCTTCCGATATAC

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 365

Protein sequence:

>365_residues
MNKKILVTKSSIPDLDEYVEELKDLWETRWLTNMGVKHQLLEEKLKEYLDTENITLFVNGHLALESIIQAMDLKGEVITT
PFTFISTTHAIVRSGLTPVFCDISYDDYTIDVSKIEDLITERTSAIIPVHVYGNICDYQEIDRIAKKYNLIVIYDAAHAF
GERIDGRNVSNLGDASIFSFHATKVFNTIEGGAVTYKKNELKEKLDQIKNFGITGPESIESVGGNAKMNEFQAAMGICNL
RHVDDEIEKRKKVVERYRERLSDIKGIKLYEEKENVKSNYAYFPVLFDGYKATRDEIFEELKKNNIFARKYFYPLTNDAQ
CYKNKFNVEETPTAKYVSERILTLPLYADLELSDVDRICDIIRNI

Sequences:

>Translated_365_residues
MNKKILVTKSSIPDLDEYVEELKDLWETRWLTNMGVKHQLLEEKLKEYLDTENITLFVNGHLALESIIQAMDLKGEVITT
PFTFISTTHAIVRSGLTPVFCDISYDDYTIDVSKIEDLITERTSAIIPVHVYGNICDYQEIDRIAKKYNLIVIYDAAHAF
GERIDGRNVSNLGDASIFSFHATKVFNTIEGGAVTYKKNELKEKLDQIKNFGITGPESIESVGGNAKMNEFQAAMGICNL
RHVDDEIEKRKKVVERYRERLSDIKGIKLYEEKENVKSNYAYFPVLFDGYKATRDEIFEELKKNNIFARKYFYPLTNDAQ
CYKNKFNVEETPTAKYVSERILTLPLYADLELSDVDRICDIIRNI
>Mature_365_residues
MNKKILVTKSSIPDLDEYVEELKDLWETRWLTNMGVKHQLLEEKLKEYLDTENITLFVNGHLALESIIQAMDLKGEVITT
PFTFISTTHAIVRSGLTPVFCDISYDDYTIDVSKIEDLITERTSAIIPVHVYGNICDYQEIDRIAKKYNLIVIYDAAHAF
GERIDGRNVSNLGDASIFSFHATKVFNTIEGGAVTYKKNELKEKLDQIKNFGITGPESIESVGGNAKMNEFQAAMGICNL
RHVDDEIEKRKKVVERYRERLSDIKGIKLYEEKENVKSNYAYFPVLFDGYKATRDEIFEELKKNNIFARKYFYPLTNDAQ
CYKNKFNVEETPTAKYVSERILTLPLYADLELSDVDRICDIIRNI

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=366, Percent_Identity=28.4153005464481, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI2367285, Length=326, Percent_Identity=28.5276073619632, Blast_Score=108, Evalue=6e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 42059; Mature: 42059

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKILVTKSSIPDLDEYVEELKDLWETRWLTNMGVKHQLLEEKLKEYLDTENITLFVNG
CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEC
HLALESIIQAMDLKGEVITTPFTFISTTHAIVRSGLTPVFCDISYDDYTIDVSKIEDLIT
HHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHCCCCEEEEEECCCCEEEEHHHHHHHHH
ERTSAIIPVHVYGNICDYQEIDRIAKKYNLIVIYDAAHAFGERIDGRNVSNLGDASIFSF
HHHCCEEEEEEECCCCCHHHHHHHHHHCCEEEEEECHHHHHHHCCCCCCCCCCCCHHHHH
HATKVFNTIEGGAVTYKKNELKEKLDQIKNFGITGPESIESVGGNAKMNEFQAAMGICNL
HHHHHHHHCCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHH
RHVDDEIEKRKKVVERYRERLSDIKGIKLYEEKENVKSNYAYFPVLFDGYKATRDEIFEE
HHCCHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCCCCCEEEEEEECCCHHHHHHHHHH
LKKNNIFARKYFYPLTNDAQCYKNKFNVEETPTAKYVSERILTLPLYADLELSDVDRICD
HHHCCEEEEEEECCCCCCHHHHHCCCCCCCCCHHHHHHHHHEEEEEEECCCHHHHHHHHH
IIRNI
HHHCC
>Mature Secondary Structure
MNKKILVTKSSIPDLDEYVEELKDLWETRWLTNMGVKHQLLEEKLKEYLDTENITLFVNG
CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEC
HLALESIIQAMDLKGEVITTPFTFISTTHAIVRSGLTPVFCDISYDDYTIDVSKIEDLIT
HHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHCCCCEEEEEECCCCEEEEHHHHHHHHH
ERTSAIIPVHVYGNICDYQEIDRIAKKYNLIVIYDAAHAFGERIDGRNVSNLGDASIFSF
HHHCCEEEEEEECCCCCHHHHHHHHHHCCEEEEEECHHHHHHHCCCCCCCCCCCCHHHHH
HATKVFNTIEGGAVTYKKNELKEKLDQIKNFGITGPESIESVGGNAKMNEFQAAMGICNL
HHHHHHHHCCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHH
RHVDDEIEKRKKVVERYRERLSDIKGIKLYEEKENVKSNYAYFPVLFDGYKATRDEIFEE
HHCCHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCCCCCEEEEEEECCCHHHHHHHHHH
LKKNNIFARKYFYPLTNDAQCYKNKFNVEETPTAKYVSERILTLPLYADLELSDVDRICD
HHHCCEEEEEEECCCCCCHHHHHCCCCCCCCCHHHHHHHHHEEEEEEECCCHHHHHHHHH
IIRNI
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]