Click here to switch to the map view.

The map label for this gene is ytqA [H]

Identifier: 160902226

GI number: 160902226

Start: 812753

End: 813667

Strand: Direct

Name: ytqA [H]

Synonym: Pmob_0760

Alternate gene names: 160902226

Gene position: 812753-813667 (Clockwise)

Preceding gene: 160902225

Following gene: 160902273

Centisome position: 37.46

GC content: 36.83

Gene sequence:

>915_bases
TTGGATTTGTATAATAGGTTGAGTGAGTATTTTAAGAATAGATACGGTGAAAGGGTGCAAAGGTTACCAATCAACGCGGG
ATTTACTTGCCCAAATAAAACAGGTGAGAGAGGAAAAGGCGGGTGCATTTACTGCGATTTAACGGGGAGTGGGTTTGCAG
CTTTTAAGCCTAAGGTGAGTATCGAAGAACAGGTTAAGGAAATGATTAATAGATACGAGAAAAAAGCTAATAAGTTCCTC
GCCTATTTTCAGGCAAACACCAATACTTACGCCCCTGTTGATGAATTGAAAGAGAAGTATGAAAGTGCTTTGATAGACGA
TAGAATAGTAGGTTTGGATGTATCGACCCGACCTGATTGTGTCCCAGATGAAGTGATAACACTTTTAAAAACTTTTAAAG
ATAGGGTTGATGTTTACGTTGAGCTTGGTGTTGAGAGCACTAACCCTAACACGTTAAAGTATATGAACAGAGGGCATTCT
TTGGCAGAGGTTATAGATTCTGTTAACAGGTTAAAAAAAGCTGAACTAGAGGTTATTCTGCATTACATAATAGATTTTCC
TTGTGATACATTAGAAGATGTGAAAGAGATGGCTAAAGTTAGTTCAGCGTTGAAGGTTGACGGTGTAAAATTGCATTCTT
TGTATATCGTTGAAAATACAAAGCTTGCGGATTTGTATAAAAGTGGGGAGTTTGTGCCCTTGACGTTGGATGATTTTGTA
GAAAGGGCAATTACTTTCTTGGAATATTTGGATCCAAAGATTGTAATTCATAGGCTCGTTGCCGATCCTCCAAAAATTGG
GACGTTACATGGAAATTGGGGGATTTCTAAAATAAAAATTTTAAACTTAATTGAAAATACGATGAGAGAGAGAGGTTCCT
ATCAGGGTAAATATTTTAACTATTTGAATAATTGA

Upstream 100 bases:

>100_bases
CATGGTATAGGGGAGTAAACAACTTATTTTTTGTCATTTATGGTCCAAAAAGAAGCGTTATAAACGACTTGAAACTTCAA
TTGAATAGATGGTGATTTTG

Downstream 100 bases:

>100_bases
AGTAGGACGGTTGATCGCGAGTAGGCATACTTGGGCCTATTTTGAGGAAAGTCCGGACTCTAAGGGCAAGATACTGGTTA
ACAACCAGAGGGAGTGATCC

Product: putative radical SAM protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MDLYNRLSEYFKNRYGERVQRLPINAGFTCPNKTGERGKGGCIYCDLTGSGFAAFKPKVSIEEQVKEMINRYEKKANKFL
AYFQANTNTYAPVDELKEKYESALIDDRIVGLDVSTRPDCVPDEVITLLKTFKDRVDVYVELGVESTNPNTLKYMNRGHS
LAEVIDSVNRLKKAELEVILHYIIDFPCDTLEDVKEMAKVSSALKVDGVKLHSLYIVENTKLADLYKSGEFVPLTLDDFV
ERAITFLEYLDPKIVIHRLVADPPKIGTLHGNWGISKIKILNLIENTMRERGSYQGKYFNYLNN

Sequences:

>Translated_304_residues
MDLYNRLSEYFKNRYGERVQRLPINAGFTCPNKTGERGKGGCIYCDLTGSGFAAFKPKVSIEEQVKEMINRYEKKANKFL
AYFQANTNTYAPVDELKEKYESALIDDRIVGLDVSTRPDCVPDEVITLLKTFKDRVDVYVELGVESTNPNTLKYMNRGHS
LAEVIDSVNRLKKAELEVILHYIIDFPCDTLEDVKEMAKVSSALKVDGVKLHSLYIVENTKLADLYKSGEFVPLTLDDFV
ERAITFLEYLDPKIVIHRLVADPPKIGTLHGNWGISKIKILNLIENTMRERGSYQGKYFNYLNN
>Mature_304_residues
MDLYNRLSEYFKNRYGERVQRLPINAGFTCPNKTGERGKGGCIYCDLTGSGFAAFKPKVSIEEQVKEMINRYEKKANKFL
AYFQANTNTYAPVDELKEKYESALIDDRIVGLDVSTRPDCVPDEVITLLKTFKDRVDVYVELGVESTNPNTLKYMNRGHS
LAEVIDSVNRLKKAELEVILHYIIDFPCDTLEDVKEMAKVSSALKVDGVKLHSLYIVENTKLADLYKSGEFVPLTLDDFV
ERAITFLEYLDPKIVIHRLVADPPKIGTLHGNWGISKIKILNLIENTMRERGSYQGKYFNYLNN

Specific function: Unknown

COG id: COG1242

COG function: function code R; Predicted Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Homo sapiens, GI23510283, Length=195, Percent_Identity=27.1794871794872, Blast_Score=74, Evalue=1e-13,
Organism=Escherichia coli, GI2367204, Length=272, Percent_Identity=33.8235294117647, Blast_Score=176, Evalue=1e-45,
Organism=Caenorhabditis elegans, GI133955098, Length=215, Percent_Identity=28.3720930232558, Blast_Score=75, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR005911
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 34732; Mature: 34732

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLYNRLSEYFKNRYGERVQRLPINAGFTCPNKTGERGKGGCIYCDLTGSGFAAFKPKVS
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEECCCCCC
IEEQVKEMINRYEKKANKFLAYFQANTNTYAPVDELKEKYESALIDDRIVGLDVSTRPDC
HHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCC
VPDEVITLLKTFKDRVDVYVELGVESTNPNTLKYMNRGHSLAEVIDSVNRLKKAELEVIL
CHHHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
HYIIDFPCDTLEDVKEMAKVSSALKVDGVKLHSLYIVENTKLADLYKSGEFVPLTLDDFV
HHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCHHHHHHHCCCEEEEEHHHHH
ERAITFLEYLDPKIVIHRLVADPPKIGTLHGNWGISKIKILNLIENTMRERGSYQGKYFN
HHHHHHHHHHCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHH
YLNN
HCCC
>Mature Secondary Structure
MDLYNRLSEYFKNRYGERVQRLPINAGFTCPNKTGERGKGGCIYCDLTGSGFAAFKPKVS
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEECCCCCC
IEEQVKEMINRYEKKANKFLAYFQANTNTYAPVDELKEKYESALIDDRIVGLDVSTRPDC
HHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCC
VPDEVITLLKTFKDRVDVYVELGVESTNPNTLKYMNRGHSLAEVIDSVNRLKKAELEVIL
CHHHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
HYIIDFPCDTLEDVKEMAKVSSALKVDGVKLHSLYIVENTKLADLYKSGEFVPLTLDDFV
HHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCHHHHHHHCCCEEEEEHHHHH
ERAITFLEYLDPKIVIHRLVADPPKIGTLHGNWGISKIKILNLIENTMRERGSYQGKYFN
HHHHHHHHHHCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHH
YLNN
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]