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The map label for this gene is ydcM [C]

Identifier: 160902223

GI number: 160902223

Start: 809664

End: 810812

Strand: Direct

Name: ydcM [C]

Synonym: Pmob_0757

Alternate gene names: 160902223

Gene position: 809664-810812 (Clockwise)

Preceding gene: 160902209

Following gene: 160902224

Centisome position: 37.32

GC content: 33.33

Gene sequence:

>1149_bases
ATGTTAAAAACATACAAGTTTCGTATATATCCATCAAACGAACAAATAGAGAAACTTAATCAGCATTTTGGACATACTCG
ATTTGTATACAATCTTTTTCTAGAATTCTCCAGTAATGCATACAAGAATACCAAAACATCAACTAACTATTATATGTGGG
CTAAAGTACTTACGGTTCTTAAAAAAACTGAGAAGTATCAATGGCTAAACGATGTCAACTCTCAATCTTTGCAACAGTCC
ATAAAAGATTTAGAGACTGGGTATAAACGTTTCTTCAAGAAACAAGCTAAGCACCCTAAATTTAAAAAGAAATCAAGTAG
GCAATCGTTTAGAGTTCCACAACATATACAACTGTATGAAAATGAGGGTAATGATAAATATGGTACTCTTTTCGTACCAA
AGTTTAAAGAAGGTATCAAAGTAAGAGTACATAGAAAAATCGATCCAAATGCAAAGATAAAAAATTGTACTTTCATTAAA
ACTACAACAGGTAAGTACTTTGTATCTATAACATTCGAAGTTGAAGGTTCTTTCCCCGATAGAGATATAGACTACGAGAA
CTCAATTGGTATGGATATGGGATTGAAAGATTCTGTTGTATTATCCGATGGAACAAAGTATCCAGCTCCTAAAGTTTTGT
CTAAGTACGAAAGGAAATTAAAACACGCATATAAAAAGTTTTCAAGCAAAGAACAAGGTTCTAAGAATTGGGACAAGGCA
AAATTAGAAGTTGCTAGAATACATGAGAAAATAAAAAATACCCGAGAGGATTTTCTACATAAACTAACGAAAGAAATCAG
TGAGAACCAAGCTGATGTCTTCGTTGTGGAAACTCTCAATATAAGAGGCATGTTAAAGAATCATCACTTAGCTAAAAGTA
TTTCAGATTCAGGATGGTACCAATTCAAAACATTTCTAAAATACAAAGCAGAGAGATTAGGTAAAAAGGTAATCGAGATA
GGAATGTTCGAACCTTCGTCTAAGGTTTGTAGTGTATGTGGGTATAAGAACGAAGGTTTAAAACTCTCTGATAGGGAATG
GGTATGTCCTGAATGTGGAACTAAACATGATAGAGATGTAAATGCTGCCGTTAATATTAGGCAGTTTGGATTAAAACAGG
CATTTTCCACACAGCCTTATGGCACATAA

Upstream 100 bases:

>100_bases
TTAATCCTTACGAGCTTGAATCAAAAAAATGTTGTTAATTATATGTATGTATGGTACAATTGTATTATATCATAGAGTTT
TCGAATTAAGGTGATTGAAT

Downstream 100 bases:

>100_bases
GGAAACAGTTAGTCACTGTATAAACTGACTCTACCCCAGGAACTGGGGGAAGTAAAGCCTTTGGAGACTGTGTAAGACGG
GCATCCTTAGATCCCTTCTA

Product: IS605 family transposase OrfB

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MLKTYKFRIYPSNEQIEKLNQHFGHTRFVYNLFLEFSSNAYKNTKTSTNYYMWAKVLTVLKKTEKYQWLNDVNSQSLQQS
IKDLETGYKRFFKKQAKHPKFKKKSSRQSFRVPQHIQLYENEGNDKYGTLFVPKFKEGIKVRVHRKIDPNAKIKNCTFIK
TTTGKYFVSITFEVEGSFPDRDIDYENSIGMDMGLKDSVVLSDGTKYPAPKVLSKYERKLKHAYKKFSSKEQGSKNWDKA
KLEVARIHEKIKNTREDFLHKLTKEISENQADVFVVETLNIRGMLKNHHLAKSISDSGWYQFKTFLKYKAERLGKKVIEI
GMFEPSSKVCSVCGYKNEGLKLSDREWVCPECGTKHDRDVNAAVNIRQFGLKQAFSTQPYGT

Sequences:

>Translated_382_residues
MLKTYKFRIYPSNEQIEKLNQHFGHTRFVYNLFLEFSSNAYKNTKTSTNYYMWAKVLTVLKKTEKYQWLNDVNSQSLQQS
IKDLETGYKRFFKKQAKHPKFKKKSSRQSFRVPQHIQLYENEGNDKYGTLFVPKFKEGIKVRVHRKIDPNAKIKNCTFIK
TTTGKYFVSITFEVEGSFPDRDIDYENSIGMDMGLKDSVVLSDGTKYPAPKVLSKYERKLKHAYKKFSSKEQGSKNWDKA
KLEVARIHEKIKNTREDFLHKLTKEISENQADVFVVETLNIRGMLKNHHLAKSISDSGWYQFKTFLKYKAERLGKKVIEI
GMFEPSSKVCSVCGYKNEGLKLSDREWVCPECGTKHDRDVNAAVNIRQFGLKQAFSTQPYGT
>Mature_382_residues
MLKTYKFRIYPSNEQIEKLNQHFGHTRFVYNLFLEFSSNAYKNTKTSTNYYMWAKVLTVLKKTEKYQWLNDVNSQSLQQS
IKDLETGYKRFFKKQAKHPKFKKKSSRQSFRVPQHIQLYENEGNDKYGTLFVPKFKEGIKVRVHRKIDPNAKIKNCTFIK
TTTGKYFVSITFEVEGSFPDRDIDYENSIGMDMGLKDSVVLSDGTKYPAPKVLSKYERKLKHAYKKFSSKEQGSKNWDKA
KLEVARIHEKIKNTREDFLHKLTKEISENQADVFVVETLNIRGMLKNHHLAKSISDSGWYQFKTFLKYKAERLGKKVIEI
GMFEPSSKVCSVCGYKNEGLKLSDREWVCPECGTKHDRDVNAAVNIRQFGLKQAFSTQPYGT

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=364, Percent_Identity=32.967032967033, Blast_Score=180, Evalue=1e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 44665; Mature: 44665

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKTYKFRIYPSNEQIEKLNQHFGHTRFVYNLFLEFSSNAYKNTKTSTNYYMWAKVLTVL
CCCEEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
KKTEKYQWLNDVNSQSLQQSIKDLETGYKRFFKKQAKHPKFKKKSSRQSFRVPQHIQLYE
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHCCCCCEEEEEE
NEGNDKYGTLFVPKFKEGIKVRVHRKIDPNAKIKNCTFIKTTTGKYFVSITFEVEGSFPD
CCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCEEEEEEEEEECCCCC
RDIDYENSIGMDMGLKDSVVLSDGTKYPAPKVLSKYERKLKHAYKKFSSKEQGSKNWDKA
CCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
KLEVARIHEKIKNTREDFLHKLTKEISENQADVFVVETLNIRGMLKNHHLAKSISDSGWY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCHH
QFKTFLKYKAERLGKKVIEIGMFEPSSKVCSVCGYKNEGLKLSDREWVCPECGTKHDRDV
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCC
NAAVNIRQFGLKQAFSTQPYGT
HHEEHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLKTYKFRIYPSNEQIEKLNQHFGHTRFVYNLFLEFSSNAYKNTKTSTNYYMWAKVLTVL
CCCEEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
KKTEKYQWLNDVNSQSLQQSIKDLETGYKRFFKKQAKHPKFKKKSSRQSFRVPQHIQLYE
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHCCCCCEEEEEE
NEGNDKYGTLFVPKFKEGIKVRVHRKIDPNAKIKNCTFIKTTTGKYFVSITFEVEGSFPD
CCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCEEEEEEEEEECCCCC
RDIDYENSIGMDMGLKDSVVLSDGTKYPAPKVLSKYERKLKHAYKKFSSKEQGSKNWDKA
CCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
KLEVARIHEKIKNTREDFLHKLTKEISENQADVFVVETLNIRGMLKNHHLAKSISDSGWY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCHH
QFKTFLKYKAERLGKKVIEIGMFEPSSKVCSVCGYKNEGLKLSDREWVCPECGTKHDRDV
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCC
NAAVNIRQFGLKQAFSTQPYGT
HHEEHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]