| Definition | Petrotoga mobilis SJ95 chromosome, complete genome. |
|---|---|
| Accession | NC_010003 |
| Length | 2,169,548 |
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The map label for this gene is dnaE [H]
Identifier: 160902203
GI number: 160902203
Start: 789515
End: 791923
Strand: Direct
Name: dnaE [H]
Synonym: Pmob_0737
Alternate gene names: 160902203
Gene position: 789515-791923 (Clockwise)
Preceding gene: 160902202
Following gene: 160902204
Centisome position: 36.39
GC content: 32.13
Gene sequence:
>2409_bases TTGAAGATCTTAGGACCTGTGGTAACTTCAAAAAGTATTGGTAAATCCTATCTTCAGCTAAGGGACCTTTTCCCCATAGC AAAAAGGTATGGGTACAATTGCATAGTTCTATCAGAGCCGCACCCAAGATCATGGGTGAGTTTTATCGTTTATGCCCAAA AGTATAGAATTAAGCCAATAATATTATATGAAACTGCAAATGGTAAGTACTTATTGCAAACAAACAACGATATTAGATCA GCTATAATGCACTACAACGGATTAGGAAACAACTTAAGATTAAAAAAAATCGATATGGATCTTCCCTATGTGAAGTATCC AACTGACTTTTTAAAAGATATATTTAAAGATGAAGAATCTCTTTGTATCAAAGATGGTTTAAAATATCAAAATGAACTAT CTATTTTCTCTAATATAGAAACTTATTACAATATAGGAAACTATAGATTTGATGAATACAAAGTTACCGACTATAATCTA ACAGATACTATTTCACAAAAAGACCTAACTTTCGAAGAAAAAAGACGGCTATCTTACGAGCTGAACATAATAAAAAAGTT AAAAGTAGAAAATTATATTTTAACGGTTAAAAAAATCGTTGACACCGCTAAAAAAAATGGCATCTCGGTCGGACCTGGAA GAGGCTCAGCAGTAGGTTCCTTTTTAGTTTATAAATTAGGAATAACTAAGGTGAATCCTATTGAATACGATCTCCTCTTC GAAAGATTTCTAAACGAATACAGGCATGAATTACCCGATATAGACCTTGATATCGACGCGGAGAAAAGGGTTGATCTAAT AAAGGCATTGCAAAAAGAATTTGGAGAAAACAAGATCTCTCAAATCAGGACCTACTCAACCATGAAAATTAAATCTGCTT TAAAAAAGGCAGAAGAATTACTTGGATACAATTTAGAAGCCAAAATAAACACCCCAATAAGAAGCAAAGAGAACATCGAT AAATTCAAATCTTTATCACAAAAAGAGAAAACCTTTTTTTATGCCGCTTATTATCTTGAAGGAATAGAAGTTGCAGAGTC AGTACATGCAGCGGGTTTAATAATTTCCCAAAATGACCTTAGAACCTTTTCTCCCCTGGAAAAAAAGGAAGTACCTATAA TAGAATGGGAAATGTCTGATTTAAAATATTTAGGAGTGGAAAAGTTCGACATTTTAGCTTTGGACACGTTGACCTTCTTA AAAAGATTACAGATAAAAGAAAAGTACCGAGAGCTTAACGATTCAAAAACTTTCCATTACCTATCTAAAGGTTTGACAAA AGGCATCTTCCAATTGGACTCAAAATTAGGGCAAAAATTAGCCCAAAGAATAAAACCCAAAAATTTTGAAGAGCTTATCT TACTATTAGCCATCAACAGACCCGGACCCCTTGAATCTGGGATGATAGATCAATACGTTAATGATGACTCACCAGAATAT TTGAAAAAAATCTTCTCCGAGACAAAGGGAGTTTTAGTTTACCAAGAACAGATAATGAAAATCGCTCAAATCTTAGGGGA ATTTTCTCCACAAGAATCAGATTTGTTGAGAAAGGCAGTATCTAAAAAAGAAAAAGACAAAATTACAACCTTCAAAAACA AATTTGTTACCAACGCCTCAAAAAAGATAGACGAAAAAGAAGCAACTTTATTGTTTTCTCAGATAGAAAACTTTGCTCAG TATGCCTTTAATAAATCTCATGCGGTTGCATACGCTCACATTACATACTGGCTTTCAGAAAAAAAATTTAAAGATCCTTC CAATTTCTTCTTAGAATATGTTAAAATAAAAGGCGTTGATGTCGATGTAATAAATGAAGCATCAGTTTTAGGTGTGAAAA TAAAGTTGCCAGACATTAGATATCCATTTGGTTTGGCAAGTGAAACAGAGCTAATACTACCTTTGTATATAATTAAAGGA ATAGGTAGAAATGTTTCTCAGATATTTGAAGAAGCGAAACTCTTAAGCTTAGAAAATTTTTTTAATTTCATAATAAACAA AAATATCAACAGAAATATTGTGGAATTAATAATCAAATCAGGCGCATTAGATTATTTTAACAACAACCGTAAAAATCTAC TAAGAGAAACCACTCAGCGAGTGAAGGGAAAAGTTCAACAGTTAGAAGATATAAAAAGTACGTTATTTGGAGAGAGAGAA CAAAAATCAACTAAAAAGGTTGAAACAACCTTACAAGATTTAGCCCAGTACGAAATAGAAAGTATAGGATTTCCATTGAG TTTAATGTCCCAAAAAGGGTTATCTAACACGTTGATAGACAAATATCTCTATAGGCAAAAGGTTTACCTTGATGGTTATG TCTACAGAGATTTTATAGTAGATAACTCTGCTATGATCAATTCAAAAGTTTATAACAAAAACCTAAAAAGACTTATTAAA TACATTTAA
Upstream 100 bases:
>100_bases GAATGGATGGAATTTTTGGCCCCTTTACCCGATGACTTTAAGAATCTATTGATCACTCTAACAAACCTAGATGGACAAAA TTCTTAACGGAGGGCTGTTA
Downstream 100 bases:
>100_bases ATTCCAATTTTGAGAAGGGAAAATATGAAAATCGATATTCTATCAATAGCTGAGAAATACCCTGGTCAGGGGGTGTATTC TGCCACATCGGATCACAAAT
Product: DNA polymerase III subunit alpha
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 802; Mature: 802
Protein sequence:
>802_residues MKILGPVVTSKSIGKSYLQLRDLFPIAKRYGYNCIVLSEPHPRSWVSFIVYAQKYRIKPIILYETANGKYLLQTNNDIRS AIMHYNGLGNNLRLKKIDMDLPYVKYPTDFLKDIFKDEESLCIKDGLKYQNELSIFSNIETYYNIGNYRFDEYKVTDYNL TDTISQKDLTFEEKRRLSYELNIIKKLKVENYILTVKKIVDTAKKNGISVGPGRGSAVGSFLVYKLGITKVNPIEYDLLF ERFLNEYRHELPDIDLDIDAEKRVDLIKALQKEFGENKISQIRTYSTMKIKSALKKAEELLGYNLEAKINTPIRSKENID KFKSLSQKEKTFFYAAYYLEGIEVAESVHAAGLIISQNDLRTFSPLEKKEVPIIEWEMSDLKYLGVEKFDILALDTLTFL KRLQIKEKYRELNDSKTFHYLSKGLTKGIFQLDSKLGQKLAQRIKPKNFEELILLLAINRPGPLESGMIDQYVNDDSPEY LKKIFSETKGVLVYQEQIMKIAQILGEFSPQESDLLRKAVSKKEKDKITTFKNKFVTNASKKIDEKEATLLFSQIENFAQ YAFNKSHAVAYAHITYWLSEKKFKDPSNFFLEYVKIKGVDVDVINEASVLGVKIKLPDIRYPFGLASETELILPLYIIKG IGRNVSQIFEEAKLLSLENFFNFIINKNINRNIVELIIKSGALDYFNNNRKNLLRETTQRVKGKVQQLEDIKSTLFGERE QKSTKKVETTLQDLAQYEIESIGFPLSLMSQKGLSNTLIDKYLYRQKVYLDGYVYRDFIVDNSAMINSKVYNKNLKRLIK YI
Sequences:
>Translated_802_residues MKILGPVVTSKSIGKSYLQLRDLFPIAKRYGYNCIVLSEPHPRSWVSFIVYAQKYRIKPIILYETANGKYLLQTNNDIRS AIMHYNGLGNNLRLKKIDMDLPYVKYPTDFLKDIFKDEESLCIKDGLKYQNELSIFSNIETYYNIGNYRFDEYKVTDYNL TDTISQKDLTFEEKRRLSYELNIIKKLKVENYILTVKKIVDTAKKNGISVGPGRGSAVGSFLVYKLGITKVNPIEYDLLF ERFLNEYRHELPDIDLDIDAEKRVDLIKALQKEFGENKISQIRTYSTMKIKSALKKAEELLGYNLEAKINTPIRSKENID KFKSLSQKEKTFFYAAYYLEGIEVAESVHAAGLIISQNDLRTFSPLEKKEVPIIEWEMSDLKYLGVEKFDILALDTLTFL KRLQIKEKYRELNDSKTFHYLSKGLTKGIFQLDSKLGQKLAQRIKPKNFEELILLLAINRPGPLESGMIDQYVNDDSPEY LKKIFSETKGVLVYQEQIMKIAQILGEFSPQESDLLRKAVSKKEKDKITTFKNKFVTNASKKIDEKEATLLFSQIENFAQ YAFNKSHAVAYAHITYWLSEKKFKDPSNFFLEYVKIKGVDVDVINEASVLGVKIKLPDIRYPFGLASETELILPLYIIKG IGRNVSQIFEEAKLLSLENFFNFIINKNINRNIVELIIKSGALDYFNNNRKNLLRETTQRVKGKVQQLEDIKSTLFGERE QKSTKKVETTLQDLAQYEIESIGFPLSLMSQKGLSNTLIDKYLYRQKVYLDGYVYRDFIVDNSAMINSKVYNKNLKRLIK YI >Mature_802_residues MKILGPVVTSKSIGKSYLQLRDLFPIAKRYGYNCIVLSEPHPRSWVSFIVYAQKYRIKPIILYETANGKYLLQTNNDIRS AIMHYNGLGNNLRLKKIDMDLPYVKYPTDFLKDIFKDEESLCIKDGLKYQNELSIFSNIETYYNIGNYRFDEYKVTDYNL TDTISQKDLTFEEKRRLSYELNIIKKLKVENYILTVKKIVDTAKKNGISVGPGRGSAVGSFLVYKLGITKVNPIEYDLLF ERFLNEYRHELPDIDLDIDAEKRVDLIKALQKEFGENKISQIRTYSTMKIKSALKKAEELLGYNLEAKINTPIRSKENID KFKSLSQKEKTFFYAAYYLEGIEVAESVHAAGLIISQNDLRTFSPLEKKEVPIIEWEMSDLKYLGVEKFDILALDTLTFL KRLQIKEKYRELNDSKTFHYLSKGLTKGIFQLDSKLGQKLAQRIKPKNFEELILLLAINRPGPLESGMIDQYVNDDSPEY LKKIFSETKGVLVYQEQIMKIAQILGEFSPQESDLLRKAVSKKEKDKITTFKNKFVTNASKKIDEKEATLLFSQIENFAQ YAFNKSHAVAYAHITYWLSEKKFKDPSNFFLEYVKIKGVDVDVINEASVLGVKIKLPDIRYPFGLASETELILPLYIIKG IGRNVSQIFEEAKLLSLENFFNFIINKNINRNIVELIIKSGALDYFNNNRKNLLRETTQRVKGKVQQLEDIKSTLFGERE QKSTKKVETTLQDLAQYEIESIGFPLSLMSQKGLSNTLIDKYLYRQKVYLDGYVYRDFIVDNSAMINSKVYNKNLKRLIK YI
Specific function: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The alpha chain is the DNA polymerase [H]
COG id: COG0587
COG function: function code L; DNA polymerase III, alpha subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DNA polymerase type-C family. DnaE subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786381, Length=700, Percent_Identity=30.4285714285714, Blast_Score=303, Evalue=2e-83,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011708 - InterPro: IPR003141 - InterPro: IPR004805 [H]
Pfam domain/function: PF07733 DNA_pol3_alpha [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 93046; Mature: 93046
Theoretical pI: Translated: 9.64; Mature: 9.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKILGPVVTSKSIGKSYLQLRDLFPIAKRYGYNCIVLSEPHPRSWVSFIVYAQKYRIKPI CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCEE ILYETANGKYLLQTNNDIRSAIMHYNGLGNNLRLKKIDMDLPYVKYPTDFLKDIFKDEES EEEEECCCEEEEECCCHHHHHHHHHCCCCCCEEEEEECCCCCCEECCHHHHHHHHCCCCH LCIKDGLKYQNELSIFSNIETYYNIGNYRFDEYKVTDYNLTDTISQKDLTFEEKRRLSYE HHHHCCCCCHHHHHHHHCCHHHEECCCEEECCEEEECCCCHHCCCCCCCCHHHHHHHHHH LNIIKKLKVENYILTVKKIVDTAKKNGISVGPGRGSAVGSFLVYKLGITKVNPIEYDLLF HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHEECCCCCCCCHHHHHH ERFLNEYRHELPDIDLDIDAEKRVDLIKALQKEFGENKISQIRTYSTMKIKSALKKAEEL HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH LGYNLEAKINTPIRSKENIDKFKSLSQKEKTFFYAAYYLEGIEVAESVHAAGLIISQNDL HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHCEEEEECCCC RTFSPLEKKEVPIIEWEMSDLKYLGVEKFDILALDTLTFLKRLQIKEKYRELNDSKTFHY CCCCCCCCCCCCEEEEECCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH LSKGLTKGIFQLDSKLGQKLAQRIKPKNFEELILLLAINRPGPLESGMIDQYVNDDSPEY HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEEECCCCCCCCCCHHHHCCCCCHHH LKKIFSETKGVLVYQEQIMKIAQILGEFSPQESDLLRKAVSKKEKDKITTFKNKFVTNAS HHHHHHHCCCEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHH KKIDEKEATLLFSQIENFAQYAFNKSHAVAYAHITYWLSEKKFKDPSNFFLEYVKIKGVD HHCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCCHHHHHEEHEEECCE VDVINEASVLGVKIKLPDIRYPFGLASETELILPLYIIKGIGRNVSQIFEEAKLLSLENF EEEECCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH FNFIINKNINRNIVELIIKSGALDYFNNNRKNLLRETTQRVKGKVQQLEDIKSTLFGERE HHHHHCCCCCHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH QKSTKKVETTLQDLAQYEIESIGFPLSLMSQKGLSNTLIDKYLYRQKVYLDGYVYRDFIV HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHEECCEEEEEEEE DNSAMINSKVYNKNLKRLIKYI CCCHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure MKILGPVVTSKSIGKSYLQLRDLFPIAKRYGYNCIVLSEPHPRSWVSFIVYAQKYRIKPI CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCEE ILYETANGKYLLQTNNDIRSAIMHYNGLGNNLRLKKIDMDLPYVKYPTDFLKDIFKDEES EEEEECCCEEEEECCCHHHHHHHHHCCCCCCEEEEEECCCCCCEECCHHHHHHHHCCCCH LCIKDGLKYQNELSIFSNIETYYNIGNYRFDEYKVTDYNLTDTISQKDLTFEEKRRLSYE HHHHCCCCCHHHHHHHHCCHHHEECCCEEECCEEEECCCCHHCCCCCCCCHHHHHHHHHH LNIIKKLKVENYILTVKKIVDTAKKNGISVGPGRGSAVGSFLVYKLGITKVNPIEYDLLF HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHEECCCCCCCCHHHHHH ERFLNEYRHELPDIDLDIDAEKRVDLIKALQKEFGENKISQIRTYSTMKIKSALKKAEEL HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH LGYNLEAKINTPIRSKENIDKFKSLSQKEKTFFYAAYYLEGIEVAESVHAAGLIISQNDL HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHCEEEEECCCC RTFSPLEKKEVPIIEWEMSDLKYLGVEKFDILALDTLTFLKRLQIKEKYRELNDSKTFHY CCCCCCCCCCCCEEEEECCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH LSKGLTKGIFQLDSKLGQKLAQRIKPKNFEELILLLAINRPGPLESGMIDQYVNDDSPEY HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEEECCCCCCCCCCHHHHCCCCCHHH LKKIFSETKGVLVYQEQIMKIAQILGEFSPQESDLLRKAVSKKEKDKITTFKNKFVTNAS HHHHHHHCCCEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHH KKIDEKEATLLFSQIENFAQYAFNKSHAVAYAHITYWLSEKKFKDPSNFFLEYVKIKGVD HHCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCCHHHHHEEHEEECCE VDVINEASVLGVKIKLPDIRYPFGLASETELILPLYIIKGIGRNVSQIFEEAKLLSLENF EEEECCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH FNFIINKNINRNIVELIIKSGALDYFNNNRKNLLRETTQRVKGKVQQLEDIKSTLFGERE HHHHHCCCCCHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH QKSTKKVETTLQDLAQYEIESIGFPLSLMSQKGLSNTLIDKYLYRQKVYLDGYVYRDFIV HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHEECCEEEEEEEE DNSAMINSKVYNKNLKRLIKYI CCCHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9826752; 10360571 [H]