Click here to switch to the map view.

The map label for this gene is smpB

Identifier: 160901850

GI number: 160901850

Start: 394168

End: 394620

Strand: Direct

Name: smpB

Synonym: Pmob_0366

Alternate gene names: 160901850

Gene position: 394168-394620 (Clockwise)

Preceding gene: 160901849

Following gene: 160901851

Centisome position: 18.17

GC content: 32.01

Gene sequence:

>453_bases
ATAACAACTTTAGCAAGAAACAAAAAAGCTACTCACGATTATGAAATAATAGAAACCTTTGAAGCAGGGATTTCTTTATT
GGGCACAGAAGTAAAATCCAGCAAAGCTGGAAAAATCAATTTCAAGGATAGTTTCTGTAAAATAGAAAAAGGCGAATTGA
TTTTATATAATGTTCACATCAGCCCTTATTCAGGGGCATCTATATTTAATCACGATCCAGAAAGACCTAGAAAACTTTTA
CTTCATAAAAAAGAAATAAGGCGTTTGCAATCTAAAGTTCAACAGGAAGGCTTGACGATGATTCCGCTCGAAATCTATAC
TAACAATAAAGGGCTGATAAAAGTTAAAATCGCTTTGGCTAAAGGATTGAAAAAATACGATAAGCGTGAAAAGATTGCAG
AAAAAGAGTATGAAAGGAGAATTAGAAAACAACAAAAATATGAAAATATCTGA

Upstream 100 bases:

>100_bases
AAACTGCACAAATAATAAGCAAAGAAAAGAAGTAATAACACTATTAATAGTTTTTCAATTTAATATTGTAAAAACATCAC
AATTTTAGAGGTGAAGAAAT

Downstream 100 bases:

>100_bases
AAAAATCTCACCAGCAATATCAATTAAGGGATTAACAAAAAGATTCGGGAAAACGGTTGCGGTTGATAACGTTGATCTAG
AAATTAACGAAGGAGAGATT

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 149

Protein sequence:

>150_residues
MTTLARNKKATHDYEIIETFEAGISLLGTEVKSSKAGKINFKDSFCKIEKGELILYNVHISPYSGASIFNHDPERPRKLL
LHKKEIRRLQSKVQQEGLTMIPLEIYTNNKGLIKVKIALAKGLKKYDKREKIAEKEYERRIRKQQKYENI

Sequences:

>Translated_150_residues
MTTLARNKKATHDYEIIETFEAGISLLGTEVKSSKAGKINFKDSFCKIEKGELILYNVHISPYSGASIFNHDPERPRKLL
LHKKEIRRLQSKVQQEGLTMIPLEIYTNNKGLIKVKIALAKGLKKYDKREKIAEKEYERRIRKQQKYENI
>Mature_149_residues
TTLARNKKATHDYEIIETFEAGISLLGTEVKSSKAGKINFKDSFCKIEKGELILYNVHISPYSGASIFNHDPERPRKLLL
HKKEIRRLQSKVQQEGLTMIPLEIYTNNKGLIKVKIALAKGLKKYDKREKIAEKEYERRIRKQQKYENI

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=138, Percent_Identity=45.6521739130435, Blast_Score=119, Evalue=9e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_PETMO (A9BF44)

Other databases:

- EMBL:   CP000879
- RefSeq:   YP_001567431.1
- ProteinModelPortal:   A9BF44
- SMR:   A9BF44
- GeneID:   5758372
- GenomeReviews:   CP000879_GR
- KEGG:   pmo:Pmob_0366
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- ProtClustDB:   PRK05422
- BioCyc:   PMOB403833:PMOB_0366-MONOMER
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 17463; Mature: 17331

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTLARNKKATHDYEIIETFEAGISLLGTEVKSSKAGKINFKDSFCKIEKGELILYNVHI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEECCCEEEEEEEE
SPYSGASIFNHDPERPRKLLLHKKEIRRLQSKVQQEGLTMIPLEIYTNNKGLIKVKIALA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEEHHHH
KGLKKYDKREKIAEKEYERRIRKQQKYENI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TTLARNKKATHDYEIIETFEAGISLLGTEVKSSKAGKINFKDSFCKIEKGELILYNVHI
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEECCCEEEEEEEE
SPYSGASIFNHDPERPRKLLLHKKEIRRLQSKVQQEGLTMIPLEIYTNNKGLIKVKIALA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEEHHHH
KGLKKYDKREKIAEKEYERRIRKQQKYENI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA