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The map label for this gene is araR [H]

Identifier: 160901785

GI number: 160901785

Start: 322879

End: 323940

Strand: Direct

Name: araR [H]

Synonym: Pmob_0301

Alternate gene names: 160901785

Gene position: 322879-323940 (Clockwise)

Preceding gene: 160901784

Following gene: 160901786

Centisome position: 14.88

GC content: 33.99

Gene sequence:

>1062_bases
GTGAAAAAGACCAAGCAATCTATCATAAAAGATTACATCCTTGATCAATTGAAGAGTGGAGAATTAAAAAAAGGAGATAG
AATTCTATCTGAAAATAAATTGGCTGAATTTTTTTCCGTCAGCAGGCAGACAGTTAGAAAAGCTATCTACGATTTAGAAA
AAGAAGGGTATTTGGTTACTAGAAGAGGCAGTGGAACTTACGTTAAATCCATGAGAAAAGATAAAGAAAACATCGGCATT
TTAACTCAATCTTTGACTGACTATATATTTCCTTTTATAGTTATGGGGGCAGAAGAGGTATTAAAAAATACTAAATGTAA
ATCTTTTATAGGTAACGCAAAAAACGATCCTGTTGTTGAAAGAGAGACTTTAGAAAGGTGGATGGATCTTGGATTAAAAG
GTATGATAGTAGATCCAGTAGTAAGTGCCACCAAACAAGCCAATGTAACTCTTTTAAAAGAAATAAGTGAACAGATCCCA
ACCGTGATTATAAATAGTGATCTGAATATTCCATACGCTGGAACGTTGGTTTTGAACGACTACGATTGTGGATCTTTTGC
AGCGAAGAAATTTATCGAATTAGGGCATAAAAGGGTCGCTGTGATATACAAAGCCGTTCATAAAGCAGCAAATGAAAGAG
CTAATGGATTTATAGACACAATAAAAGAACATAAGCAAATATTGCTATACGAATTGCCTTTTCATGGTCAAGAAACATCC
GATGAAGTTTTCAATTTAATCATGTCACTTTTGAGCCTTCCAAAAAACAATATACCCACTGCAATTTTTTGTTCAAACGA
TTTGGTAGCTATGCAAGTGATAATGGCCGCAAAAAAGTTGAATCTTGATATACCAAACGATATTTCGTTAATAGGTTTTG
ATGATGCAGATTTTGCACAAGCACTCGAAATTTCTACTTTTAGGCATCCAAAACAGCAATTTGGTGAAAAAGCAGCTCAA
ATGCTGCTTAAAATGATCGTGGAAAATAACAATGGAAAACCAGAAAAAATTGTCGAGAAAGCTGAGTTCATAGGAAGAAA
TAGCCTTATTCAAAAAAAGTGA

Upstream 100 bases:

>100_bases
GGCAGTATGGATCAGGAAGTGAAATCTTTCCAAAATTATAGCATTTCTTAAGTATTATACTATACTAGTTATAGCAAAAA
ACTATGGAGGAGTTTTGGCA

Downstream 100 bases:

>100_bases
GGAAAAAAGATGGTTGATCTTTTAAATCTTAAAATAGAACAAATGGCTGATTTGAATTTCAAATGTGAATGTGGAAGAAC
TCATAAAGTAGATATTGAAA

Product: regulatory protein GntR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MKKTKQSIIKDYILDQLKSGELKKGDRILSENKLAEFFSVSRQTVRKAIYDLEKEGYLVTRRGSGTYVKSMRKDKENIGI
LTQSLTDYIFPFIVMGAEEVLKNTKCKSFIGNAKNDPVVERETLERWMDLGLKGMIVDPVVSATKQANVTLLKEISEQIP
TVIINSDLNIPYAGTLVLNDYDCGSFAAKKFIELGHKRVAVIYKAVHKAANERANGFIDTIKEHKQILLYELPFHGQETS
DEVFNLIMSLLSLPKNNIPTAIFCSNDLVAMQVIMAAKKLNLDIPNDISLIGFDDADFAQALEISTFRHPKQQFGEKAAQ
MLLKMIVENNNGKPEKIVEKAEFIGRNSLIQKK

Sequences:

>Translated_353_residues
MKKTKQSIIKDYILDQLKSGELKKGDRILSENKLAEFFSVSRQTVRKAIYDLEKEGYLVTRRGSGTYVKSMRKDKENIGI
LTQSLTDYIFPFIVMGAEEVLKNTKCKSFIGNAKNDPVVERETLERWMDLGLKGMIVDPVVSATKQANVTLLKEISEQIP
TVIINSDLNIPYAGTLVLNDYDCGSFAAKKFIELGHKRVAVIYKAVHKAANERANGFIDTIKEHKQILLYELPFHGQETS
DEVFNLIMSLLSLPKNNIPTAIFCSNDLVAMQVIMAAKKLNLDIPNDISLIGFDDADFAQALEISTFRHPKQQFGEKAAQ
MLLKMIVENNNGKPEKIVEKAEFIGRNSLIQKK
>Mature_353_residues
MKKTKQSIIKDYILDQLKSGELKKGDRILSENKLAEFFSVSRQTVRKAIYDLEKEGYLVTRRGSGTYVKSMRKDKENIGI
LTQSLTDYIFPFIVMGAEEVLKNTKCKSFIGNAKNDPVVERETLERWMDLGLKGMIVDPVVSATKQANVTLLKEISEQIP
TVIINSDLNIPYAGTLVLNDYDCGSFAAKKFIELGHKRVAVIYKAVHKAANERANGFIDTIKEHKQILLYELPFHGQETS
DEVFNLIMSLLSLPKNNIPTAIFCSNDLVAMQVIMAAKKLNLDIPNDISLIGFDDADFAQALEISTFRHPKQQFGEKAAQ
MLLKMIVENNNGKPEKIVEKAEFIGRNSLIQKK

Specific function: Transcriptional repressor of the arabinose utilization genes [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787948, Length=316, Percent_Identity=27.5316455696203, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1790369, Length=317, Percent_Identity=23.6593059936909, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1790194, Length=263, Percent_Identity=26.9961977186312, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI48994940, Length=253, Percent_Identity=20.1581027667984, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789202, Length=243, Percent_Identity=24.2798353909465, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR001761
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 39780; Mature: 39780

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTKQSIIKDYILDQLKSGELKKGDRILSENKLAEFFSVSRQTVRKAIYDLEKEGYLVT
CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
RRGSGTYVKSMRKDKENIGILTQSLTDYIFPFIVMGAEEVLKNTKCKSFIGNAKNDPVVE
ECCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHCCCCCCCCCC
RETLERWMDLGLKGMIVDPVVSATKQANVTLLKEISEQIPTVIINSDLNIPYAGTLVLND
HHHHHHHHHCCCCCEEHHHHHHHHHHCCHHHHHHHHHHCCEEEEECCCCCCEEEEEEEEC
YDCGSFAAKKFIELGHKRVAVIYKAVHKAANERANGFIDTIKEHKQILLYELPFHGQETS
CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEEECCCCCCCCH
DEVFNLIMSLLSLPKNNIPTAIFCSNDLVAMQVIMAAKKLNLDIPNDISLIGFDDADFAQ
HHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHH
ALEISTFRHPKQQFGEKAAQMLLKMIVENNNGKPEKIVEKAEFIGRNSLIQKK
HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKKTKQSIIKDYILDQLKSGELKKGDRILSENKLAEFFSVSRQTVRKAIYDLEKEGYLVT
CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
RRGSGTYVKSMRKDKENIGILTQSLTDYIFPFIVMGAEEVLKNTKCKSFIGNAKNDPVVE
ECCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHCCCCCCCCCC
RETLERWMDLGLKGMIVDPVVSATKQANVTLLKEISEQIPTVIINSDLNIPYAGTLVLND
HHHHHHHHHCCCCCEEHHHHHHHHHHCCHHHHHHHHHHCCEEEEECCCCCCEEEEEEEEC
YDCGSFAAKKFIELGHKRVAVIYKAVHKAANERANGFIDTIKEHKQILLYELPFHGQETS
CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEEECCCCCCCCH
DEVFNLIMSLLSLPKNNIPTAIFCSNDLVAMQVIMAAKKLNLDIPNDISLIGFDDADFAQ
HHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHH
ALEISTFRHPKQQFGEKAAQMLLKMIVENNNGKPEKIVEKAEFIGRNSLIQKK
HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA