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The map label for this gene is yvoA [H]

Identifier: 160901654

GI number: 160901654

Start: 165251

End: 165955

Strand: Direct

Name: yvoA [H]

Synonym: Pmob_0165

Alternate gene names: 160901654

Gene position: 165251-165955 (Clockwise)

Preceding gene: 160901653

Following gene: 160901655

Centisome position: 7.62

GC content: 32.77

Gene sequence:

>705_bases
ATGGCCGATTATAAGACGCCAATCTATCAAAGGATTGCTGACAAAATAGTTTCAAGAATATATGAAGGGGAATATCCAAT
GAACTCATTTCTTCCGTCAGAAAATGACTTAGCCGAGGAATTTCATGTAACAAGAACTACGATAAGAAAAGTTTTAAGTT
TATTGAAACAGCAAGGGACAATTAAAAGTTACCAAGGAAGAGGGTATAAAGTTCAAACTCTTTTATGGGAGCAAAGTCTT
TTAAAGTTTTACAGCTTTGGGAAAAGTATAGCTAGCAAGGTTGAAAATTCTAATACTAAACTTATATCGGTAAAAAACGT
CTCTGGCTTGGAAGATGTTGATGAATTTGAAAACCTAGAATTATGGGAAATTACGAGGTTGAGATTAGTTGGTGAAATTC
CTTTAATATTGGAAACCTCTTACATCCCTGTCGAATTTTTAAAAAAAGTGGATAATGAAAATCTGAAAACAAAACCTCTG
TATGATTTACTTGCCAGAGAAGGAATAAGATGTGTCAATGCAAAAGAATATCTTGAACCAGTTCTTCCTTCACTAGAAGC
CCAAGAATTGCTAGAAATTGAAGAAAATATTCCCCTTTTTCAAACTACAAGATACACATATGATTCCGAAAATAGATTGG
TAGAATTCAGAGAAAGTCTTATAAGAGCTGATCATTTTAGATTCTTTACTGAATTGAAATTGTAG

Upstream 100 bases:

>100_bases
TCTGAGAATTCTTGACTTGATTCGTTTTATTTGATATAATTTGTGTATACAAGTATGAGTAGACATATTTGTATATCTTT
CTTGAAGGAAGGTAACTTAA

Downstream 100 bases:

>100_bases
GGAGAATAATAAAAATGGATGAAAAAGGCAGATCAAAATTATTGTTAAAAATGTTCATCACATTTTTTAAAATAGGGCTC
TTCACTTTTGGTGGCGGGTA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 233

Protein sequence:

>234_residues
MADYKTPIYQRIADKIVSRIYEGEYPMNSFLPSENDLAEEFHVTRTTIRKVLSLLKQQGTIKSYQGRGYKVQTLLWEQSL
LKFYSFGKSIASKVENSNTKLISVKNVSGLEDVDEFENLELWEITRLRLVGEIPLILETSYIPVEFLKKVDNENLKTKPL
YDLLAREGIRCVNAKEYLEPVLPSLEAQELLEIEENIPLFQTTRYTYDSENRLVEFRESLIRADHFRFFTELKL

Sequences:

>Translated_234_residues
MADYKTPIYQRIADKIVSRIYEGEYPMNSFLPSENDLAEEFHVTRTTIRKVLSLLKQQGTIKSYQGRGYKVQTLLWEQSL
LKFYSFGKSIASKVENSNTKLISVKNVSGLEDVDEFENLELWEITRLRLVGEIPLILETSYIPVEFLKKVDNENLKTKPL
YDLLAREGIRCVNAKEYLEPVLPSLEAQELLEIEENIPLFQTTRYTYDSENRLVEFRESLIRADHFRFFTELKL
>Mature_233_residues
ADYKTPIYQRIADKIVSRIYEGEYPMNSFLPSENDLAEEFHVTRTTIRKVLSLLKQQGTIKSYQGRGYKVQTLLWEQSLL
KFYSFGKSIASKVENSNTKLISVKNVSGLEDVDEFENLELWEITRLRLVGEIPLILETSYIPVEFLKKVDNENLKTKPLY
DLLAREGIRCVNAKEYLEPVLPSLEAQELLEIEENIPLFQTTRYTYDSENRLVEFRESLIRADHFRFFTELKL

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082252, Length=221, Percent_Identity=25.7918552036199, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1788418, Length=235, Percent_Identity=23.4042553191489, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1786950, Length=230, Percent_Identity=22.1739130434783, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI1790118, Length=217, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=9e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27432; Mature: 27301

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADYKTPIYQRIADKIVSRIYEGEYPMNSFLPSENDLAEEFHVTRTTIRKVLSLLKQQGT
CCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
IKSYQGRGYKVQTLLWEQSLLKFYSFGKSIASKVENSNTKLISVKNVSGLEDVDEFENLE
CCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHCCCC
LWEITRLRLVGEIPLILETSYIPVEFLKKVDNENLKTKPLYDLLAREGIRCVNAKEYLEP
HHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHH
VLPSLEAQELLEIEENIPLFQTTRYTYDSENRLVEFRESLIRADHFRFFTELKL
HCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ADYKTPIYQRIADKIVSRIYEGEYPMNSFLPSENDLAEEFHVTRTTIRKVLSLLKQQGT
CCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
IKSYQGRGYKVQTLLWEQSLLKFYSFGKSIASKVENSNTKLISVKNVSGLEDVDEFENLE
CCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHCCCC
LWEITRLRLVGEIPLILETSYIPVEFLKKVDNENLKTKPLYDLLAREGIRCVNAKEYLEP
HHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHH
VLPSLEAQELLEIEENIPLFQTTRYTYDSENRLVEFRESLIRADHFRFFTELKL
HCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]