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The map label for this gene is yggB [C]

Identifier: 160901595

GI number: 160901595

Start: 100660

End: 101496

Strand: Direct

Name: yggB [C]

Synonym: Pmob_0104

Alternate gene names: 160901595

Gene position: 100660-101496 (Clockwise)

Preceding gene: 160901594

Following gene: 160901596

Centisome position: 4.64

GC content: 33.45

Gene sequence:

>837_bases
ATGCCAGAATGGCTCCAAACAACTATCAATTATCTAATAAGAATTGGTATCAGTGTTGCAATTCTCTTTATCGCGAGGTA
TTTAGCAAAATTTATCTATAGAATCATAATAAACACAGCAGAAAAAAGCGGAAGAGTAACGCTTCAATACAAGAAATCTT
TAATGACGATATTGAACATAGCTATGTATACCTTAGGTGGTTTTATCATTATTTCTGTAATTTTTACCAACCTTAGCGCA
TTTCTTGCTGGATTAGGAATAGGTGGTATAATAGTCGCTTTTGCAGTACAAGAACCTCTTGGTAATTTAATATGTGGATT
TTTAATAATGTTGAACCATCTTGTAGTAGATGGTGAAGCTGTCGAAATAAATGGAATATCTGGATCAGTAGAAGAGATAA
ACGTTAATCATGTGGTCATAAGAACATGGGATGGAAGAAGAGTCAACCTTCCCAGTAGAGAAGTTTGGTCAAGCAAGATC
ATTCATTATTGGCCTACAAACATAAGAAGAAACGAGGTAAAAGTTGGAGTATCTTACTCATCCGATCTAAACAAGGTAAT
AAACGTAATAGATGAAGCAGTACGATCAGCCGAATTAGTGCACATAGATGATGACCATCAACCGCTAATCGTTTTTGATG
GTTACGCCGATTCTTCAATAAACTTCATTGTAAGGTTCTGGGCAAAACAAGAAAATTTTATAAATTCGTCGATGGATGTA
GCAAAATCAATTAAACAAAAATTCGAAGAAAATAAAGTTGAAATACCTTTTAACCAATTAGACCTTCACATAAAAGAAGT
CCCCAATGAAATAACACAAAACAAAGAAAATATTTAA

Upstream 100 bases:

>100_bases
GTAAAAGTATCTTTCGTTTTGAAACTTCTGCTATATATGCAATGAGTATCATTAACTATGAATACAACAGGTTATTTATT
TAATAAGGGGGGGGTTCAAA

Downstream 100 bases:

>100_bases
ATTATAGAAATTTTCAAAAAGGCGGTGTAAACCGCCTTTCTTAATTTTACTGTACTGTGCAAAAGTTTTTTCATAATGCT
TTGAAATAACTTCCAAATTC

Product: mechanosensitive ion channel MscS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MPEWLQTTINYLIRIGISVAILFIARYLAKFIYRIIINTAEKSGRVTLQYKKSLMTILNIAMYTLGGFIIISVIFTNLSA
FLAGLGIGGIIVAFAVQEPLGNLICGFLIMLNHLVVDGEAVEINGISGSVEEINVNHVVIRTWDGRRVNLPSREVWSSKI
IHYWPTNIRRNEVKVGVSYSSDLNKVINVIDEAVRSAELVHIDDDHQPLIVFDGYADSSINFIVRFWAKQENFINSSMDV
AKSIKQKFEENKVEIPFNQLDLHIKEVPNEITQNKENI

Sequences:

>Translated_278_residues
MPEWLQTTINYLIRIGISVAILFIARYLAKFIYRIIINTAEKSGRVTLQYKKSLMTILNIAMYTLGGFIIISVIFTNLSA
FLAGLGIGGIIVAFAVQEPLGNLICGFLIMLNHLVVDGEAVEINGISGSVEEINVNHVVIRTWDGRRVNLPSREVWSSKI
IHYWPTNIRRNEVKVGVSYSSDLNKVINVIDEAVRSAELVHIDDDHQPLIVFDGYADSSINFIVRFWAKQENFINSSMDV
AKSIKQKFEENKVEIPFNQLDLHIKEVPNEITQNKENI
>Mature_277_residues
PEWLQTTINYLIRIGISVAILFIARYLAKFIYRIIINTAEKSGRVTLQYKKSLMTILNIAMYTLGGFIIISVIFTNLSAF
LAGLGIGGIIVAFAVQEPLGNLICGFLIMLNHLVVDGEAVEINGISGSVEEINVNHVVIRTWDGRRVNLPSREVWSSKII
HYWPTNIRRNEVKVGVSYSSDLNKVINVIDEAVRSAELVHIDDDHQPLIVFDGYADSSINFIVRFWAKQENFINSSMDVA
KSIKQKFEENKVEIPFNQLDLHIKEVPNEITQNKENI

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=269, Percent_Identity=26.3940520446097, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1786670, Length=231, Percent_Identity=26.8398268398268, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI2367355, Length=214, Percent_Identity=24.2990654205607, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 31462; Mature: 31331

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEWLQTTINYLIRIGISVAILFIARYLAKFIYRIIINTAEKSGRVTLQYKKSLMTILNI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHH
AMYTLGGFIIISVIFTNLSAFLAGLGIGGIIVAFAVQEPLGNLICGFLIMLNHLVVDGEA
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCE
VEINGISGSVEEINVNHVVIRTWDGRRVNLPSREVWSSKIIHYWPTNIRRNEVKVGVSYS
EEEECCCCCCEEEECCEEEEEECCCCEECCCCHHHHHCCCEEECCCCCCCCEEEEEEECH
SDLNKVINVIDEAVRSAELVHIDDDHQPLIVFDGYADSSINFIVRFWAKQENFINSSMDV
HHHHHHHHHHHHHHHCCEEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCHHHHH
AKSIKQKFEENKVEIPFNQLDLHIKEVPNEITQNKENI
HHHHHHHHHCCCEECCHHHHHHHHHHCCHHHHCCCCCC
>Mature Secondary Structure 
PEWLQTTINYLIRIGISVAILFIARYLAKFIYRIIINTAEKSGRVTLQYKKSLMTILNI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHH
AMYTLGGFIIISVIFTNLSAFLAGLGIGGIIVAFAVQEPLGNLICGFLIMLNHLVVDGEA
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCE
VEINGISGSVEEINVNHVVIRTWDGRRVNLPSREVWSSKIIHYWPTNIRRNEVKVGVSYS
EEEECCCCCCEEEECCEEEEEECCCCEECCCCHHHHHCCCEEECCCCCCCCEEEEEEECH
SDLNKVINVIDEAVRSAELVHIDDDHQPLIVFDGYADSSINFIVRFWAKQENFINSSMDV
HHHHHHHHHHHHHHHCCEEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCHHHHH
AKSIKQKFEENKVEIPFNQLDLHIKEVPNEITQNKENI
HHHHHHHHHCCCEECCHHHHHHHHHHCCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]