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The map label for this gene is yhgF [H]

Identifier: 160877436

GI number: 160877436

Start: 5118357

End: 5120720

Strand: Reverse

Name: yhgF [H]

Synonym: Sbal195_4334

Alternate gene names: 160877436

Gene position: 5120720-5118357 (Counterclockwise)

Preceding gene: 160877437

Following gene: 160877435

Centisome position: 95.76

GC content: 50.04

Gene sequence:

>2364_bases
ATGCAAACTAATGCACATAACATCGCTCAGATTATCGCTCAAGAACTGAATGTTCGTGAGCAACAAGTTGCCGCAACCAT
CACTCTGCTTGACGATGGTGCGACAGTTCCCTTCGTTGCCCGTTATCGTAAAGAAGCCACGGGCGGATTAGACGATACGC
AACTGCGTACCTTATACACACGTTTAGGTTACCTGCGTGAGCTTAACGACAGACGCCAAGTGATCCTGTCTAGCATCCAA
GCTCAGGGTAAGTTAACGCCAGAATTACAAAGGGCTATTGATGACGCAGACAGCAAGACACGTCTCGAAGATTTGTATCT
GCCCTTCAAACCTAAGCGCCGCACTAAGGGCCAAATCGCTATCGAAGCTGGGCTTGAACCATTAGCCGATGCCTTGCTGG
CTGACCGTAGCGCCGATGTTGAAACCAAAGCGGCGGTTTATATCAATAGCGAAGCGGGTTTTGTCGATGTGAAAGCTGTG
CTTGAAGGCGCGCGTTATATCCTGATGGAGCGCTATGCCGAAGACGCGGAATTACTGCGTAAAGTGCGTGAACATTTAAG
CCAAAACAGTGTGTTAGAAAGCCGCTTAATTGCAGGTAAGGAGAAAGAAGGCGCGAAATTCCGTGATTATTTCGAGCATA
CCGAACAGTTAGCTAAGATCCCTTCTCACCGTGCGCTGGCGATGCTGCGTGGCCGTAACGAAGGTTTTTTATCCCTATCT
ATGAATGCCGATCCTGCTGCCGAAGCGGGCCAAGGCAGTTATTGCGAAGTAATTATCTGCGATCACTTAGGGCTGAAACT
GGGCAATAGCAGCGTCGATCAATGGTTGAAAACTGTAGTGACGGCGACATGGCGCATTAAGATTGCGCTACAGATGGAAA
CCGAGTTTATTTCGCAAATGCGCGAACGCGCCGAAGCCGAAGCCATTAAAGTTTTTGCCCGTAACTTAGGTGATTTATTG
ATGGCCGCTCCTGCGGGCGCGAAAGCCACCATGGGACTCGATCCTGGTTTACGTACCGGCGTGAAAGTGGCTGTGGTCGA
TAACACGGGTAAGATGTTGTGCCATGCGACGATTTTTCCGCACGCACCGCAAAATCTGTGGGAAAAGTCGATCCGTACTT
TGGCGAACTTAGTCAAAATGCATAAGGTTGAATTGATTGCGATTGGTAACGGCACGGCATCACGGGAAACCGACAAGCTG
GCCGCTGAGCTGATTGCCGCAGTGAAAGATACCCATCCACAGTTGACTAAAGTGATGGTCAGCGAAGCGGGCGCGTCTGT
GTATTCGGCATCGGAATTGGCGGCGCTGGAGTTTCCTGATCTCGATGTCTCGATTCGTGGTGCTGTGTCTATCGCGCGTC
GTTTGCAGGATCCGTTAGCCGAACTGGTGAAAATTGAGCCTAAATCTATCGGTGTGGGTCAATATCAACACGACGTGAGC
CAAAGCCAATTATCGGGTTCGCTGGAAGCTGTGGTGGAAGACTGTGTAAACGGTGTGGGTGTGGATCTCAACATGGCCTC
TGCGCCTTTGTTGTCGCAAGTGGCGGGTTTAAACAAGACGTTAGCGAAAAATGTGGTCGATTATCGCGATGCCAATGGTC
AGTTTAAGAATCGTAAAGAGTTGCTGAAAGTGCCACGTTTAGGGCCTAAAGCCTATGAGCAAGCGGCGGGCTTTTTGCGT
ATTCGTGAAGGTGATAATCCACTCGATGCCTCGTCTGTGCATCCTGAGGCTTATTCGTTAGTGGAAACTATCGCTGAGAC
TAAGCAAGTGGAGCTGGCGAGCCTGATGGGTAACTCAGATCTACTGCGCAGCATCAAACCTGAAGAGTTCATTACGGCGG
AGTTTGGTTTACCAACTGTGACGGATATTTTAGCCGAGCTGGATAAGCCGGGACGCGATCCCCGTGGTGAGTTTAAAACC
GCCAAGTTTAAAGATGGTGTGGAAGAACTTAAGCACTTAAAACCTGAAATGGTGCTCGAAGGCGTAGTGACCAACGTGAC
TAACTTTGGTGCCTTCGTCGATATTGGCGTGCATCAAGATGGACTGGTGCATATCTCTTCACTGACCGACAAGTTTATTA
GCGATCCCCACACAATCGTGAAAGCGGGTGATGTGGTCAAAGTTAAAGTGATGGAAGTGGACGTTGAGCGTCGTCGTATC
GGTTTGAGCATGCGTTTGGATGAGGCTATCGACCAAAGCAAGTCGCAGCAAAGACCGCACAATCCTGCCAGAACTCATAA
CAGTAAGGCACCACAGTCAGCGAAACCTGCTGCGCGTCCTACGCAAAAGCAAGCACCTAAAGCACCTGCGAACGCGGCCA
TGGGCAATGCCTTTGCCGATGCCTTCGCTAAGCTGAAAAAGTAA

Upstream 100 bases:

>100_bases
CTCTGCTTTGACCTAGGCTTTAGCATGAAACATACGGGGCGCCTGTGGTATCTTTGGCGCAATAACGACTTACTTTACAG
TTAGGCACGACACTTTATTT

Downstream 100 bases:

>100_bases
GCGTTAACCGTTAAGACTCGGACTTAAGCCATGTCCGAGTCGACTTTTTTACATGTTACTCACAAAATTGTTGCATCAAT
GTCGTCTTAGGGAATATAAA

Product: RNA-binding S1 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 787; Mature: 787

Protein sequence:

>787_residues
MQTNAHNIAQIIAQELNVREQQVAATITLLDDGATVPFVARYRKEATGGLDDTQLRTLYTRLGYLRELNDRRQVILSSIQ
AQGKLTPELQRAIDDADSKTRLEDLYLPFKPKRRTKGQIAIEAGLEPLADALLADRSADVETKAAVYINSEAGFVDVKAV
LEGARYILMERYAEDAELLRKVREHLSQNSVLESRLIAGKEKEGAKFRDYFEHTEQLAKIPSHRALAMLRGRNEGFLSLS
MNADPAAEAGQGSYCEVIICDHLGLKLGNSSVDQWLKTVVTATWRIKIALQMETEFISQMRERAEAEAIKVFARNLGDLL
MAAPAGAKATMGLDPGLRTGVKVAVVDNTGKMLCHATIFPHAPQNLWEKSIRTLANLVKMHKVELIAIGNGTASRETDKL
AAELIAAVKDTHPQLTKVMVSEAGASVYSASELAALEFPDLDVSIRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVS
QSQLSGSLEAVVEDCVNGVGVDLNMASAPLLSQVAGLNKTLAKNVVDYRDANGQFKNRKELLKVPRLGPKAYEQAAGFLR
IREGDNPLDASSVHPEAYSLVETIAETKQVELASLMGNSDLLRSIKPEEFITAEFGLPTVTDILAELDKPGRDPRGEFKT
AKFKDGVEELKHLKPEMVLEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFISDPHTIVKAGDVVKVKVMEVDVERRRI
GLSMRLDEAIDQSKSQQRPHNPARTHNSKAPQSAKPAARPTQKQAPKAPANAAMGNAFADAFAKLKK

Sequences:

>Translated_787_residues
MQTNAHNIAQIIAQELNVREQQVAATITLLDDGATVPFVARYRKEATGGLDDTQLRTLYTRLGYLRELNDRRQVILSSIQ
AQGKLTPELQRAIDDADSKTRLEDLYLPFKPKRRTKGQIAIEAGLEPLADALLADRSADVETKAAVYINSEAGFVDVKAV
LEGARYILMERYAEDAELLRKVREHLSQNSVLESRLIAGKEKEGAKFRDYFEHTEQLAKIPSHRALAMLRGRNEGFLSLS
MNADPAAEAGQGSYCEVIICDHLGLKLGNSSVDQWLKTVVTATWRIKIALQMETEFISQMRERAEAEAIKVFARNLGDLL
MAAPAGAKATMGLDPGLRTGVKVAVVDNTGKMLCHATIFPHAPQNLWEKSIRTLANLVKMHKVELIAIGNGTASRETDKL
AAELIAAVKDTHPQLTKVMVSEAGASVYSASELAALEFPDLDVSIRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVS
QSQLSGSLEAVVEDCVNGVGVDLNMASAPLLSQVAGLNKTLAKNVVDYRDANGQFKNRKELLKVPRLGPKAYEQAAGFLR
IREGDNPLDASSVHPEAYSLVETIAETKQVELASLMGNSDLLRSIKPEEFITAEFGLPTVTDILAELDKPGRDPRGEFKT
AKFKDGVEELKHLKPEMVLEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFISDPHTIVKAGDVVKVKVMEVDVERRRI
GLSMRLDEAIDQSKSQQRPHNPARTHNSKAPQSAKPAARPTQKQAPKAPANAAMGNAFADAFAKLKK
>Mature_787_residues
MQTNAHNIAQIIAQELNVREQQVAATITLLDDGATVPFVARYRKEATGGLDDTQLRTLYTRLGYLRELNDRRQVILSSIQ
AQGKLTPELQRAIDDADSKTRLEDLYLPFKPKRRTKGQIAIEAGLEPLADALLADRSADVETKAAVYINSEAGFVDVKAV
LEGARYILMERYAEDAELLRKVREHLSQNSVLESRLIAGKEKEGAKFRDYFEHTEQLAKIPSHRALAMLRGRNEGFLSLS
MNADPAAEAGQGSYCEVIICDHLGLKLGNSSVDQWLKTVVTATWRIKIALQMETEFISQMRERAEAEAIKVFARNLGDLL
MAAPAGAKATMGLDPGLRTGVKVAVVDNTGKMLCHATIFPHAPQNLWEKSIRTLANLVKMHKVELIAIGNGTASRETDKL
AAELIAAVKDTHPQLTKVMVSEAGASVYSASELAALEFPDLDVSIRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVS
QSQLSGSLEAVVEDCVNGVGVDLNMASAPLLSQVAGLNKTLAKNVVDYRDANGQFKNRKELLKVPRLGPKAYEQAAGFLR
IREGDNPLDASSVHPEAYSLVETIAETKQVELASLMGNSDLLRSIKPEEFITAEFGLPTVTDILAELDKPGRDPRGEFKT
AKFKDGVEELKHLKPEMVLEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFISDPHTIVKAGDVVKVKVMEVDVERRRI
GLSMRLDEAIDQSKSQQRPHNPARTHNSKAPQSAKPAARPTQKQAPKAPANAAMGNAFADAFAKLKK

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=792, Percent_Identity=32.8282828282828, Blast_Score=357, Evalue=2e-98,
Organism=Homo sapiens, GI27597090, Length=752, Percent_Identity=23.0053191489362, Blast_Score=101, Evalue=2e-21,
Organism=Escherichia coli, GI87082262, Length=765, Percent_Identity=64.8366013071895, Blast_Score=984, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=113, Percent_Identity=33.6283185840708, Blast_Score=68, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17511129, Length=725, Percent_Identity=27.5862068965517, Blast_Score=209, Evalue=5e-54,
Organism=Caenorhabditis elegans, GI17552892, Length=294, Percent_Identity=28.2312925170068, Blast_Score=73, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6321552, Length=190, Percent_Identity=27.8947368421053, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI62484314, Length=778, Percent_Identity=31.7480719794344, Blast_Score=360, Evalue=2e-99,
Organism=Drosophila melanogaster, GI24640080, Length=251, Percent_Identity=25.4980079681275, Blast_Score=75, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 86047; Mature: 86047

Theoretical pI: Translated: 7.00; Mature: 7.00

Prosite motif: PS50126 S1 ; PS00041 HTH_ARAC_FAMILY_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTNAHNIAQIIAQELNVREQQVAATITLLDDGATVPFVARYRKEATGGLDDTQLRTLYT
CCCCHHHHHHHHHHHHCCHHHHHEEEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHH
RLGYLRELNDRRQVILSSIQAQGKLTPELQRAIDDADSKTRLEDLYLPFKPKRRTKGQIA
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCEE
IEAGLEPLADALLADRSADVETKAAVYINSEAGFVDVKAVLEGARYILMERYAEDAELLR
EECCCHHHHHHHHHCCCCCCCCEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHH
KVREHLSQNSVLESRLIAGKEKEGAKFRDYFEHTEQLAKIPSHRALAMLRGRNEGFLSLS
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEE
MNADPAAEAGQGSYCEVIICDHLGLKLGNSSVDQWLKTVVTATWRIKIALQMETEFISQM
CCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHEEEEEEEEEEECHHHHHHH
RERAEAEAIKVFARNLGDLLMAAPAGAKATMGLDPGLRTGVKVAVVDNTGKMLCHATIFP
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCEEEEEEECCCCEEEEEEECC
HAPQNLWEKSIRTLANLVKMHKVELIAIGNGTASRETDKLAAELIAAVKDTHPQLTKVMV
CCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHH
SEAGASVYSASELAALEFPDLDVSIRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVS
HHCCCCHHCHHHHHEEECCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
QSQLSGSLEAVVEDCVNGVGVDLNMASAPLLSQVAGLNKTLAKNVVDYRDANGQFKNRKE
HHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHH
LLKVPRLGPKAYEQAAGFLRIREGDNPLDASSVHPEAYSLVETIAETKQVELASLMGNSD
HHHCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHH
LLRSIKPEEFITAEFGLPTVTDILAELDKPGRDPRGEFKTAKFKDGVEELKHLKPEMVLE
HHHCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHH
GVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFISDPHTIVKAGDVVKVKVMEVDVERRRI
HHHHHHHHCCCEEEECCCCCCCEEHHHHHHHHHCCCHHEEECCCEEEEEEEEECHHHHHH
GLSMRLDEAIDQSKSQQRPHNPARTHNSKAPQSAKPAARPTQKQAPKAPANAAMGNAFAD
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHH
AFAKLKK
HHHHHCC
>Mature Secondary Structure
MQTNAHNIAQIIAQELNVREQQVAATITLLDDGATVPFVARYRKEATGGLDDTQLRTLYT
CCCCHHHHHHHHHHHHCCHHHHHEEEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHH
RLGYLRELNDRRQVILSSIQAQGKLTPELQRAIDDADSKTRLEDLYLPFKPKRRTKGQIA
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCEE
IEAGLEPLADALLADRSADVETKAAVYINSEAGFVDVKAVLEGARYILMERYAEDAELLR
EECCCHHHHHHHHHCCCCCCCCEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHH
KVREHLSQNSVLESRLIAGKEKEGAKFRDYFEHTEQLAKIPSHRALAMLRGRNEGFLSLS
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEE
MNADPAAEAGQGSYCEVIICDHLGLKLGNSSVDQWLKTVVTATWRIKIALQMETEFISQM
CCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHEEEEEEEEEEECHHHHHHH
RERAEAEAIKVFARNLGDLLMAAPAGAKATMGLDPGLRTGVKVAVVDNTGKMLCHATIFP
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCEEEEEEECCCCEEEEEEECC
HAPQNLWEKSIRTLANLVKMHKVELIAIGNGTASRETDKLAAELIAAVKDTHPQLTKVMV
CCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHH
SEAGASVYSASELAALEFPDLDVSIRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVS
HHCCCCHHCHHHHHEEECCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
QSQLSGSLEAVVEDCVNGVGVDLNMASAPLLSQVAGLNKTLAKNVVDYRDANGQFKNRKE
HHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHH
LLKVPRLGPKAYEQAAGFLRIREGDNPLDASSVHPEAYSLVETIAETKQVELASLMGNSD
HHHCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHH
LLRSIKPEEFITAEFGLPTVTDILAELDKPGRDPRGEFKTAKFKDGVEELKHLKPEMVLE
HHHCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHH
GVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFISDPHTIVKAGDVVKVKVMEVDVERRRI
HHHHHHHHCCCEEEECCCCCCCEEHHHHHHHHHCCCHHEEECCCEEEEEEEEECHHHHHH
GLSMRLDEAIDQSKSQQRPHNPARTHNSKAPQSAKPAARPTQKQAPKAPANAAMGNAFAD
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHH
AFAKLKK
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]