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The map label for this gene is comF [H]

Identifier: 160877432

GI number: 160877432

Start: 5113838

End: 5114629

Strand: Reverse

Name: comF [H]

Synonym: Sbal195_4330

Alternate gene names: 160877432

Gene position: 5114629-5113838 (Counterclockwise)

Preceding gene: 160877435

Following gene: 160877431

Centisome position: 95.65

GC content: 51.01

Gene sequence:

>792_bases
ATGCCGCACTTTGTCAAAAGGATTTGGCCGCAATCTGCTTTGCGGATTATGCGTTTAGGCTATCAACTCGGCACAAGGTG
GTTGGCGGGCAGTTTACCTAACCGTTGCCTGCTGTGCCACCAATCCATACCTATCCCCGAGACGGGCATTTGCATCGTTT
GTCTTCAATCTGGCTTATATCATGGACCTATTTGCTTAGGCTGCGGTAAGTCGATGCAAATCGAGGTCGATTATTGCGGG
GAATGCCAAAAGCGTCAGCCGCGTAAAGTCGTTGCCCCCTGCAGTTACCATCAAGGTTTAGGTGCTTGGGTTGGCGCGAT
TAAATATCAAGGGCAACTTGCCGCTTTGCCCGTGCTGTGTCGCGCCTTAGTGGCGCGAATTAAGCTATTAGAACAGCAAG
GATTAATCACCTTGCCGCAAGCGATAGTGCCAGTCCCATTGCATCCAAAACGCTTGCAACAACGGGGATTTAATCAGGCG
TGGTTAATTGCCCATGAATTATCACAGCTCTTGCAACTGCCATTAGTGAGCGAGGGATTAACGCGCCAGCAAGACACTCG
GCCGCAGGCCGGACTTTCAGGTGCACAACGACGACGAAACTTACACGATGCCTTTATGTTAGCGGATGATTTTGTGTTCC
AGCGTATTGCACTGGTGGATGATGTGGTCACGACAGGCACCACAGTCTCTGAAATTGCCCGCTTATTCGAAGCGCGATAC
GTACATGTGCAGGTATGGTGCTTGGCAAGGGCAGAGGCGCCAGGCTTGTTGGATGATGTTGACGCTGTTTAA

Upstream 100 bases:

>100_bases
AGATCTGGCCCTTGGCCTCTGATTTCAATATGCAAATTTGCGTGGTTTGTGGATGTCACTTGGCTCACTTGAGTGCCTCA
AAAATGGATTAGGTGAATGT

Downstream 100 bases:

>100_bases
AACATAGCGGTCACATCATTATATCTATGTGTATGTCAAAATTATGTCAAAAATACTGAGTGAAAATGAATAAGTTTTAA
TTCTGAGACAAGGTGTAAGT

Product: competence protein ComF

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MPHFVKRIWPQSALRIMRLGYQLGTRWLAGSLPNRCLLCHQSIPIPETGICIVCLQSGLYHGPICLGCGKSMQIEVDYCG
ECQKRQPRKVVAPCSYHQGLGAWVGAIKYQGQLAALPVLCRALVARIKLLEQQGLITLPQAIVPVPLHPKRLQQRGFNQA
WLIAHELSQLLQLPLVSEGLTRQQDTRPQAGLSGAQRRRNLHDAFMLADDFVFQRIALVDDVVTTGTTVSEIARLFEARY
VHVQVWCLARAEAPGLLDDVDAV

Sequences:

>Translated_263_residues
MPHFVKRIWPQSALRIMRLGYQLGTRWLAGSLPNRCLLCHQSIPIPETGICIVCLQSGLYHGPICLGCGKSMQIEVDYCG
ECQKRQPRKVVAPCSYHQGLGAWVGAIKYQGQLAALPVLCRALVARIKLLEQQGLITLPQAIVPVPLHPKRLQQRGFNQA
WLIAHELSQLLQLPLVSEGLTRQQDTRPQAGLSGAQRRRNLHDAFMLADDFVFQRIALVDDVVTTGTTVSEIARLFEARY
VHVQVWCLARAEAPGLLDDVDAV
>Mature_262_residues
PHFVKRIWPQSALRIMRLGYQLGTRWLAGSLPNRCLLCHQSIPIPETGICIVCLQSGLYHGPICLGCGKSMQIEVDYCGE
CQKRQPRKVVAPCSYHQGLGAWVGAIKYQGQLAALPVLCRALVARIKLLEQQGLITLPQAIVPVPLHPKRLQQRGFNQAW
LIAHELSQLLQLPLVSEGLTRQQDTRPQAGLSGAQRRRNLHDAFMLADDFVFQRIALVDDVVTTGTTVSEIARLFEARYV
HVQVWCLARAEAPGLLDDVDAV

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

Organism=Escherichia coli, GI87082263, Length=224, Percent_Identity=33.9285714285714, Blast_Score=103, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 29283; Mature: 29152

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
4.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHFVKRIWPQSALRIMRLGYQLGTRWLAGSLPNRCLLCHQSIPIPETGICIVCLQSGLY
CCHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEEECCCCC
HGPICLGCGKSMQIEVDYCGECQKRQPRKVVAPCSYHQGLGAWVGAIKYQGQLAALPVLC
CCCEEEECCCCEEEEEEECCCCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCHHHHHHHH
RALVARIKLLEQQGLITLPQAIVPVPLHPKRLQQRGFNQAWLIAHELSQLLQLPLVSEGL
HHHHHHHHHHHHCCCEECCHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCHHHCCC
TRQQDTRPQAGLSGAQRRRNLHDAFMLADDFVFQRIALVDDVVTTGTTVSEIARLFEARY
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHE
VHVQVWCLARAEAPGLLDDVDAV
EEEEEEEEEECCCCCCCHHCCCC
>Mature Secondary Structure 
PHFVKRIWPQSALRIMRLGYQLGTRWLAGSLPNRCLLCHQSIPIPETGICIVCLQSGLY
CHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEEECCCCC
HGPICLGCGKSMQIEVDYCGECQKRQPRKVVAPCSYHQGLGAWVGAIKYQGQLAALPVLC
CCCEEEECCCCEEEEEEECCCCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCHHHHHHHH
RALVARIKLLEQQGLITLPQAIVPVPLHPKRLQQRGFNQAWLIAHELSQLLQLPLVSEGL
HHHHHHHHHHHHCCCEECCHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCHHHCCC
TRQQDTRPQAGLSGAQRRRNLHDAFMLADDFVFQRIALVDDVVTTGTTVSEIARLFEARY
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHE
VHVQVWCLARAEAPGLLDDVDAV
EEEEEEEEEECCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]