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The map label for this gene is rsd [H]

Identifier: 160877148

GI number: 160877148

Start: 4759910

End: 4760401

Strand: Direct

Name: rsd [H]

Synonym: Sbal195_4044

Alternate gene names: 160877148

Gene position: 4759910-4760401 (Clockwise)

Preceding gene: 160877143

Following gene: 160877151

Centisome position: 89.02

GC content: 43.09

Gene sequence:

>492_bases
ATGGAATGCATCATGCTGAGAGAACTCGAAAAAGCAGAACAGAAGTGGGGCGGTTCAAATAAGCTTATTGATCAATGGCT
AAAAAACCGTCGAAAACTGTTAGTGCATTACTGCCAAATTGCCGGACTTCCGCCTTACGGTAAATCAGAAAAATCGCTGC
CCTCGTTCGAACACGTTAAATCTTTCTGTGACTTATTAGTCGACTATGTCTCAGAAGGACATTTCGAAGTCTATGACAGA
GTCGTTAATGCCTGTAGTGAGTATGGTGAATCGAGCAAAACGCTCGCGCAACAAGTATTGCCAAAGATCACTCCAACCAC
GAATGCGGCATTAGACTTCAACGATAAATATGCGGAAACCCAAGACGATCTCGTTTTATATCAACTCGATAAAGATTTAT
CTGAGCTTGCCCATAACATGGAAACTCGCTTCGAGCTCGAAGATGAACTACTCGAAGTACTCCACCGTAAGCATTCAGAA
CACACCCAGTAA

Upstream 100 bases:

>100_bases
ACAGCTGGTTTGTCCATTTCGTCATTCACGCAAATTCGCATGAAAAGAGTTGATCGATTAGCGACTTGTCCCTACATTAG
AGTTATGTGCTGGCACTTAA

Downstream 100 bases:

>100_bases
GCCTCAATCAATTCAAGCGCACTTTGTTGTATTCTGTGCGCTTATCTTGTCACCAATACTTATAACAGCCGAAAAATACC
CACACAAACTCACGATTAAT

Product: anti-RNA polymerase sigma 70 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MECIMLRELEKAEQKWGGSNKLIDQWLKNRRKLLVHYCQIAGLPPYGKSEKSLPSFEHVKSFCDLLVDYVSEGHFEVYDR
VVNACSEYGESSKTLAQQVLPKITPTTNAALDFNDKYAETQDDLVLYQLDKDLSELAHNMETRFELEDELLEVLHRKHSE
HTQ

Sequences:

>Translated_163_residues
MECIMLRELEKAEQKWGGSNKLIDQWLKNRRKLLVHYCQIAGLPPYGKSEKSLPSFEHVKSFCDLLVDYVSEGHFEVYDR
VVNACSEYGESSKTLAQQVLPKITPTTNAALDFNDKYAETQDDLVLYQLDKDLSELAHNMETRFELEDELLEVLHRKHSE
HTQ
>Mature_163_residues
MECIMLRELEKAEQKWGGSNKLIDQWLKNRRKLLVHYCQIAGLPPYGKSEKSLPSFEHVKSFCDLLVDYVSEGHFEVYDR
VVNACSEYGESSKTLAQQVLPKITPTTNAALDFNDKYAETQDDLVLYQLDKDLSELAHNMETRFELEDELLEVLHRKHSE
HTQ

Specific function: Has binding activity to the major sigma subunit of RNA polymerase. May be involved in replacement of the RNA polymerase sigma subunit from sigma-70 to sigma-S during the transition from exponential growth to the stationary phase [H]

COG id: COG3160

COG function: function code K; Regulator of sigma D

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Rsd/AlgQ family [H]

Homologues:

Organism=Escherichia coli, GI1790428, Length=148, Percent_Identity=34.4594594594595, Blast_Score=91, Evalue=4e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007448 [H]

Pfam domain/function: PF04353 Rsd_AlgQ [H]

EC number: NA

Molecular weight: Translated: 18934; Mature: 18934

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MECIMLRELEKAEQKWGGSNKLIDQWLKNRRKLLVHYCQIAGLPPYGKSEKSLPSFEHVK
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
SFCDLLVDYVSEGHFEVYDRVVNACSEYGESSKTLAQQVLPKITPTTNAALDFNDKYAET
HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEECCCCHHCCC
QDDLVLYQLDKDLSELAHNMETRFELEDELLEVLHRKHSEHTQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MECIMLRELEKAEQKWGGSNKLIDQWLKNRRKLLVHYCQIAGLPPYGKSEKSLPSFEHVK
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
SFCDLLVDYVSEGHFEVYDRVVNACSEYGESSKTLAQQVLPKITPTTNAALDFNDKYAET
HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEECCCCHHCCC
QDDLVLYQLDKDLSELAHNMETRFELEDELLEVLHRKHSEHTQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA