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The map label for this gene is nrfC [H]

Identifier: 160877102

GI number: 160877102

Start: 4707878

End: 4708585

Strand: Reverse

Name: nrfC [H]

Synonym: Sbal195_3998

Alternate gene names: 160877102

Gene position: 4708585-4707878 (Counterclockwise)

Preceding gene: 160877103

Following gene: 160877101

Centisome position: 88.06

GC content: 47.88

Gene sequence:

>708_bases
GTGAGTGAAAATATAGAGAGACGGAGGTTCCTTAAAAGCGCTGGAATGTGCACTTTGATCTTAACTCCTTTAGGTGGGTG
TTCAGTCAAAGAGGACGGTGATAGCGCTCATAAGCCCCATTACGTCATGGTGTTTGATCAAACTAAATGTGTCGGTTGTG
GCGATTGCAAAACTGCCTGTAACCAAGCAAACCACTTACCCGAGGGAAAATCTCGCGTATTGCTTGAGCAGCAAAGTGGC
CGTGTTGAAGGGCAAGCCTGCCCGCACTGCGGCAAGATGGCCTGTGATTGTGAGCGTAAGTTTGTCCGCGTATCTTGCCA
ACAATGTAGAAATGCACCTTGTGTGACAGTGTGCCCAACGGGCGCAGCTCACCGTGATCCTGCAACAGGGATAGTGACTA
TGGACGCCAGTAAGTGTGCTGGCTGTAAGTATTGTATTGGTGCCTGTCCCTACAACGCTCGCTTTATTAATGAAGCAACA
GATGTTGCTGATAACTGTGACTTCTGTTTGCACAGCAAGCTAGCTAAGGGGGAATTACCCGCCTGTGTACAGAGTTGCAA
GTACGATGCTTTGGTCTTTGGCGATGCCAATGATCCTCAGTCTTATGTCAGTAAGTTATTAGCGGTAAAGGACTCAGTGC
GAATTAAGCCGCACTTTGGCACAGAACCAAGCTTACGTTATATACCTATCGTGAAACTGGGAGTGTAA

Upstream 100 bases:

>100_bases
AAAGTGGAGATAAACCAAGTCGCTAGCCATTTTCAGGCAAGTTAAGTCGATAACGATATAAATAAAAACGTCGGTTGAAA
ACCGATAGATGGAGGATGAT

Downstream 100 bases:

>100_bases
AGATGGATACCAGTATGGAATTTACCTTAGGGCTTTCCGAAGGTGTTGCTTGGCCATGGCCCATTGCCGTTTACCTGTTT
TTTGCGGGGATTTCGGGTGG

Product: 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein

Products: oxidized cytochrome C552; NH3 [C]

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MSENIERRRFLKSAGMCTLILTPLGGCSVKEDGDSAHKPHYVMVFDQTKCVGCGDCKTACNQANHLPEGKSRVLLEQQSG
RVEGQACPHCGKMACDCERKFVRVSCQQCRNAPCVTVCPTGAAHRDPATGIVTMDASKCAGCKYCIGACPYNARFINEAT
DVADNCDFCLHSKLAKGELPACVQSCKYDALVFGDANDPQSYVSKLLAVKDSVRIKPHFGTEPSLRYIPIVKLGV

Sequences:

>Translated_235_residues
MSENIERRRFLKSAGMCTLILTPLGGCSVKEDGDSAHKPHYVMVFDQTKCVGCGDCKTACNQANHLPEGKSRVLLEQQSG
RVEGQACPHCGKMACDCERKFVRVSCQQCRNAPCVTVCPTGAAHRDPATGIVTMDASKCAGCKYCIGACPYNARFINEAT
DVADNCDFCLHSKLAKGELPACVQSCKYDALVFGDANDPQSYVSKLLAVKDSVRIKPHFGTEPSLRYIPIVKLGV
>Mature_234_residues
SENIERRRFLKSAGMCTLILTPLGGCSVKEDGDSAHKPHYVMVFDQTKCVGCGDCKTACNQANHLPEGKSRVLLEQQSGR
VEGQACPHCGKMACDCERKFVRVSCQQCRNAPCVTVCPTGAAHRDPATGIVTMDASKCAGCKYCIGACPYNARFINEATD
VADNCDFCLHSKLAKGELPACVQSCKYDALVFGDANDPQSYVSKLLAVKDSVRIKPHFGTEPSLRYIPIVKLGV

Specific function: Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI2367345, Length=225, Percent_Identity=41.3333333333333, Blast_Score=175, Evalue=2e-45,
Organism=Escherichia coli, GI226510944, Length=199, Percent_Identity=40.7035175879397, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1789370, Length=225, Percent_Identity=31.1111111111111, Blast_Score=94, Evalue=5e-21,
Organism=Escherichia coli, GI1787122, Length=196, Percent_Identity=32.6530612244898, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1787872, Length=196, Percent_Identity=32.6530612244898, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI2367245, Length=162, Percent_Identity=30.8641975308642, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787749, Length=167, Percent_Identity=27.5449101796407, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787740, Length=96, Percent_Identity=32.2916666666667, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790326, Length=174, Percent_Identity=26.4367816091954, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787478, Length=96, Percent_Identity=32.2916666666667, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1789067, Length=174, Percent_Identity=30.4597701149425, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1787963, Length=178, Percent_Identity=26.9662921348315, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR017567
- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25433; Mature: 25301

Theoretical pI: Translated: 7.97; Mature: 7.97

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
11.5 %Cys+Met (Translated Protein)
9.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
11.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSENIERRRFLKSAGMCTLILTPLGGCSVKEDGDSAHKPHYVMVFDQTKCVGCGDCKTAC
CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHH
NQANHLPEGKSRVLLEQQSGRVEGQACPHCGKMACDCERKFVRVSCQQCRNAPCVTVCPT
HHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCC
GAAHRDPATGIVTMDASKCAGCKYCIGACPYNARFINEATDVADNCDFCLHSKLAKGELP
CCCCCCCCCEEEEECCHHCCCCCCEEECCCCCCEEHHHHHHHHCCCCHHHHHHHCCCCCH
ACVQSCKYDALVFGDANDPQSYVSKLLAVKDSVRIKPHFGTEPSLRYIPIVKLGV
HHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCEEECCCCCCCCCEEEEEEEEECC
>Mature Secondary Structure 
SENIERRRFLKSAGMCTLILTPLGGCSVKEDGDSAHKPHYVMVFDQTKCVGCGDCKTAC
CCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHH
NQANHLPEGKSRVLLEQQSGRVEGQACPHCGKMACDCERKFVRVSCQQCRNAPCVTVCPT
HHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCC
GAAHRDPATGIVTMDASKCAGCKYCIGACPYNARFINEATDVADNCDFCLHSKLAKGELP
CCCCCCCCCEEEEECCHHCCCCCCEEECCCCCCEEHHHHHHHHCCCCHHHHHHHCCCCCH
ACVQSCKYDALVFGDANDPQSYVSKLLAVKDSVRIKPHFGTEPSLRYIPIVKLGV
HHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCEEECCCCCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: reduced cytochrome C552; nitrite [C]

Specific reaction: reduced cytochrome C552 + nitrite = oxidized cytochrome C552 + NH3 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]