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The map label for this gene is yhjC [C]

Identifier: 160877074

GI number: 160877074

Start: 4674688

End: 4675632

Strand: Direct

Name: yhjC [C]

Synonym: Sbal195_3970

Alternate gene names: 160877074

Gene position: 4674688-4675632 (Clockwise)

Preceding gene: 160877066

Following gene: 160877075

Centisome position: 87.42

GC content: 48.25

Gene sequence:

>945_bases
ATGATGGATCTCAATCGCGTGCAAATTTTCGCTCAAGTCGTCGAGCAAGGCAGCTTTACGGGCGCCGCCAAAGCCCTTGG
GATCACTAAGGCAACCGTCAGTCGTAAGATAGCCGAACTCGAAGCCGATACTGGCACACAACTGTTATTTCGCACCACCA
GAGCCCTAAAACTCACCGAGGCAGGATCGAGTTATTACAATAGGATCAATAAGATCCTCACCGATCTGCAGAGCGCCGAA
AATCAGCTCAGCGCCCAGCAACAATTGATCAAAGGTAATCTAAAAATTGTCTGCCCGATTGAATTAGGTCAATTGTTTTT
AGGGCCAATTTTTGCTCAGTTTTTAACGCTTTACCCCGATATCACCATCGAGGCCGAACTCACAAACCGTAAGGTCGATG
TCATAGAAGAAGGTATCGATCTGTTATTTCAAATTGCCGATTCGGGTGACACTCGCCTGCAAAGCTATGCCTTAGTCAAC
GCCCATAAATCGTTAATGGCAAGCCCTGCTTATTTGGCCGAGCACGGCACCCCCAAAGTGCCACAGGATTTAGCCAAACA
TAAAGCGATCCGCTTACAGTCGGCGCATATTGAAGGAGCATGGAAGTTATTCGATGGCAAAACTTGGATTGTCGCCGAGC
CTATGACTCAACTGACGGTAAACAATGTCACTTTAGCCCGCGAGGCCGCCATTGCAGGGCTTGGGATCACAGCGGTGCCC
TCCATCATTGCCCAAGTGGCATTAGAAAAAGGCTACTTAATCCCGCTGCTTGATGACTATCCTATGGTCCAAACTAAGGT
CGTGCTCAGTTATCCCCAACGGGCCTACTTACCCCGAAAATATCGCGTCTTTATCGAATTCATCTATTCCGCATTATTTA
AACGTTGGGGATCGCAAGTATTGGAAGTGCCCGATTTTATCGGCCAAGCCGATCAGGGCGAATAA

Upstream 100 bases:

>100_bases
GGACATGAATGACTCCTTGATTAGTGATATCTAGTGTACTACTGTCTCACTAAGTTTATTAGCCAGTAAAAAATCAACCC
ACTGTTTCACAGGTGTAACA

Downstream 100 bases:

>100_bases
ACAAAATCGAACAAATAAAGCGATCAAAATAGTAACAACTATAACTTTGTAAAGCTTAAATCGCTGCCATGGGGATAAAT
CCGCTATGTCATAATTGCCT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MMDLNRVQIFAQVVEQGSFTGAAKALGITKATVSRKIAELEADTGTQLLFRTTRALKLTEAGSSYYNRINKILTDLQSAE
NQLSAQQQLIKGNLKIVCPIELGQLFLGPIFAQFLTLYPDITIEAELTNRKVDVIEEGIDLLFQIADSGDTRLQSYALVN
AHKSLMASPAYLAEHGTPKVPQDLAKHKAIRLQSAHIEGAWKLFDGKTWIVAEPMTQLTVNNVTLAREAAIAGLGITAVP
SIIAQVALEKGYLIPLLDDYPMVQTKVVLSYPQRAYLPRKYRVFIEFIYSALFKRWGSQVLEVPDFIGQADQGE

Sequences:

>Translated_314_residues
MMDLNRVQIFAQVVEQGSFTGAAKALGITKATVSRKIAELEADTGTQLLFRTTRALKLTEAGSSYYNRINKILTDLQSAE
NQLSAQQQLIKGNLKIVCPIELGQLFLGPIFAQFLTLYPDITIEAELTNRKVDVIEEGIDLLFQIADSGDTRLQSYALVN
AHKSLMASPAYLAEHGTPKVPQDLAKHKAIRLQSAHIEGAWKLFDGKTWIVAEPMTQLTVNNVTLAREAAIAGLGITAVP
SIIAQVALEKGYLIPLLDDYPMVQTKVVLSYPQRAYLPRKYRVFIEFIYSALFKRWGSQVLEVPDFIGQADQGE
>Mature_314_residues
MMDLNRVQIFAQVVEQGSFTGAAKALGITKATVSRKIAELEADTGTQLLFRTTRALKLTEAGSSYYNRINKILTDLQSAE
NQLSAQQQLIKGNLKIVCPIELGQLFLGPIFAQFLTLYPDITIEAELTNRKVDVIEEGIDLLFQIADSGDTRLQSYALVN
AHKSLMASPAYLAEHGTPKVPQDLAKHKAIRLQSAHIEGAWKLFDGKTWIVAEPMTQLTVNNVTLAREAAIAGLGITAVP
SIIAQVALEKGYLIPLLDDYPMVQTKVVLSYPQRAYLPRKYRVFIEFIYSALFKRWGSQVLEVPDFIGQADQGE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=294, Percent_Identity=33.3333333333333, Blast_Score=148, Evalue=4e-37,
Organism=Escherichia coli, GI1786401, Length=298, Percent_Identity=28.8590604026846, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1789440, Length=300, Percent_Identity=27.6666666666667, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1789639, Length=289, Percent_Identity=30.7958477508651, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI87081978, Length=286, Percent_Identity=27.972027972028, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI1787128, Length=295, Percent_Identity=26.1016949152542, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1787589, Length=280, Percent_Identity=27.1428571428571, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI1789173, Length=262, Percent_Identity=27.4809160305344, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI157672245, Length=197, Percent_Identity=26.9035532994924, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788706, Length=173, Percent_Identity=27.1676300578035, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790011, Length=282, Percent_Identity=24.468085106383, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787601, Length=122, Percent_Identity=26.2295081967213, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786713, Length=271, Percent_Identity=27.3062730627306, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790208, Length=123, Percent_Identity=30.0813008130081, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34768; Mature: 34768

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMDLNRVQIFAQVVEQGSFTGAAKALGITKATVSRKIAELEADTGTQLLFRTTRALKLTE
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHEEEEC
AGSSYYNRINKILTDLQSAENQLSAQQQLIKGNLKIVCPIELGQLFLGPIFAQFLTLYPD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHCCC
ITIEAELTNRKVDVIEEGIDLLFQIADSGDTRLQSYALVNAHKSLMASPAYLAEHGTPKV
CEEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCCC
PQDLAKHKAIRLQSAHIEGAWKLFDGKTWIVAEPMTQLTVNNVTLAREAAIAGLGITAVP
HHHHHHHHHHHEECCCCCCEEEEECCCEEEEECCHHHHEECCEEHHHHHHHHCCCHHHHH
SIIAQVALEKGYLIPLLDDYPMVQTKVVLSYPQRAYLPRKYRVFIEFIYSALFKRWGSQV
HHHHHHHHHCCCEEEECCCCCCHHHHHEEECCHHHCCCHHHHHHHHHHHHHHHHHHCHHH
LEVPDFIGQADQGE
HHHHHHHCCCCCCC
>Mature Secondary Structure
MMDLNRVQIFAQVVEQGSFTGAAKALGITKATVSRKIAELEADTGTQLLFRTTRALKLTE
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHEEEEC
AGSSYYNRINKILTDLQSAENQLSAQQQLIKGNLKIVCPIELGQLFLGPIFAQFLTLYPD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHCCC
ITIEAELTNRKVDVIEEGIDLLFQIADSGDTRLQSYALVNAHKSLMASPAYLAEHGTPKV
CEEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCCC
PQDLAKHKAIRLQSAHIEGAWKLFDGKTWIVAEPMTQLTVNNVTLAREAAIAGLGITAVP
HHHHHHHHHHHEECCCCCCEEEEECCCEEEEECCHHHHEECCEEHHHHHHHHCCCHHHHH
SIIAQVALEKGYLIPLLDDYPMVQTKVVLSYPQRAYLPRKYRVFIEFIYSALFKRWGSQV
HHHHHHHHHCCCEEEECCCCCCHHHHHEEECCHHHCCCHHHHHHHHHHHHHHHHHHCHHH
LEVPDFIGQADQGE
HHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]