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The map label for this gene is yciR [C]

Identifier: 160876974

GI number: 160876974

Start: 4561666

End: 4563885

Strand: Reverse

Name: yciR [C]

Synonym: Sbal195_3870

Alternate gene names: 160876974

Gene position: 4563885-4561666 (Counterclockwise)

Preceding gene: 160876976

Following gene: 160876973

Centisome position: 85.35

GC content: 48.96

Gene sequence:

>2220_bases
ATGTTAGTAGGTTTAGCAAATCCACTCCAACAGGCCTTGGTGAGTATTTTTAGTGAGTCTCCGCTAGAAACCTTAGAGCA
AAATGTTGACCGAGCACTTGAGACCATCACATTGCAGTTGCATTGTGACGGGGTATTTGTATTAACCGGCAGCCAGTCTC
TGGATCGTTTACGCACGCGTAATTTGTATCTAAAACCCCAATTTGCCAAAGGCCAACAAACCCGAGTCTGGCCCTTAGCA
CGCATGCCATTTTTTCGCTCCCTTGTCCGCACCCCGCGACTATTAAATCTGCCCGATGTGAATACCTTGCCTGCCGATGC
GCAGGCCGAGCGTGCCCTATTAAGGGACTGGGACGTGAAGAGTCTATTGGTATTGCCACCTGTGGTATTTGGCGAAACGC
GTATTGCGCTGGGCGCAGTCAATTGCTCCGAGTGTTGCGAATGGAGCGAAGAGTTTATAAGTGAGTTTAACCACGCCGCT
GTGATGATTGGCTCGGCGATGGAACTGACGCGTATCGCCCTGAGCATGCTCGCCAGTGAGCATAAATACTGTGAAGTATT
CAATCAGTTACCCTTAGCCTGCGCCTTGTTAGATAAATATAATCAATTGACTATGCTCAATAAAGTCGCCCTGCAAACGC
TGCCAATCCAACATGGTTATGATTTATTCGACATGGTGCGTGAGGAAGAACATGCCATGTTAACTGATACCTTGCATGTG
GTACGTGAAGGTGTGCTTGGTCAGGCTTGGTGTGAATTACCGTTGAAATCTATCCATCAACTGGCTTGGTTGAAACTCAG
TTTTAGCCAGATCAGTGGCGATAAAGATACCTTAGTCATGATTGCCGAAGATGTCAGCGAGAAGTATCGCCTAGCCGATG
AGCTGTCCTTCCATGCCAATTATGATGCGCTCACTGGATTGCCCAATCGGTTGCATTTCGAAGCCCTATTAGAAAACCTG
CTGCACGCCCACGACGATATGCCTATTTGTGTGGCGTTTCTCGATTTAGACCAATTCCAAGTCATCAACAATATCAGTGG
CCATCAGGCGGGCGATAAGCTGCTTTGCCAAGTGGCATTACGCTTAAAACAGCTCGTGCGTAAGGGCGATATCGTCGCCC
GTTTAGGGGGCGATGAGTTTGGTATCTTGATGCATTACTGCAATGTGGACTCGGCGAAACAAATCGCGAAACGTATCTGT
ACCCAATTGGCGAACCATGAATTTATTTGGGAAGGCCGCAGTCATAATGTCAGTGTCAGCATGGGGATTGCTAAACTCGA
TAAAAAAGCCGCCGACATTTATACCGTGATGAGTCAGGCTGATGCTGCTTGTCGCTTGGCGAAGGATCAAGGCCGCAATG
GCTGGCATTTATACAGTGCGAGCGATCCTAAAATGAACCGTCTTTATACCGAGATGATGGCGTCGGTGGACATAGTCGGC
GCACTGGCGTTAAACCAATTTGAGCTTTATTTTCAAAGCATAGTGCCATTAAACCGCGAGGAGTCTGGTCTGCATTTAGA
GATCTTACTGCGCATGGTGCAGGCCAACGGCACGATTGTGTCACCAGCCATCTTCTTGCCCGCCGCCGAGCGATATAACT
TAGCTTCTAAGGTAGACTTGTGGGTGATCGATAACTTGCTCAAGTGGGGCGGTTGCCATTTAGATATCTGGCAGCAATTG
GACCTCGTGTCGGTGAATTTGTCGGCGACCTCTTTGGGCGACTTTGAGTTTATGAACTGGCTAGAAATGCGTTTGATGGC
CGAACCTGAGCTGGTGGACAAGCTTTGCATCGAGATCACTGAAACCGCGGCCGTGAGTCAGCTCGATCAAGCGACAAAGT
TACTCGATATACTGCGCCCACTTAATTGTAAGTTAGCCCTCGATGACTTTGGGGCTGGCTTTTCTAGCTTCGCCTACCTT
AAGCGCCTTAATGTGGACTTTGTGAAGGTGGATGGTCAATTTGTGGTGAACATCTGCGAAGACAGTGCGGATCAGGCGAT
CGTCAAATCGATTTGCCAACTCGGCCAAGATATGGGCTTTGATGTGGTTGCCGAATTTGTCGAATCCCAAGATATTGGCC
GGAAACTGCAAACCCTTGGCGTCGACTATGCCCAAGGTTACGCCATCAATAAACCGATACGGTTAGCTGAGCTAACGTCA
GGGCTCAGCCGACCTTGGCTCGAAAAACGTGAGACCTTTGCCGCCTATCCACAGCTCTAG

Upstream 100 bases:

>100_bases
TAATTTGCGACTCAAGCAGACGTTTAATTTACTGTGAGCCTATACTCAATATACGTCGATAATACCTTAAATGGATTTTT
AGGTAAGGAAGTCACTTTTC

Downstream 100 bases:

>100_bases
TGTTTGGTACACTTAACTGCCGAGCCGGATTATGTTGCAGTGAAATGGTACTCACCGTCGATTGTTAGTACACTGACGGC
CTGTGTTGGCCGCTGATGTC

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 739; Mature: 739

Protein sequence:

>739_residues
MLVGLANPLQQALVSIFSESPLETLEQNVDRALETITLQLHCDGVFVLTGSQSLDRLRTRNLYLKPQFAKGQQTRVWPLA
RMPFFRSLVRTPRLLNLPDVNTLPADAQAERALLRDWDVKSLLVLPPVVFGETRIALGAVNCSECCEWSEEFISEFNHAA
VMIGSAMELTRIALSMLASEHKYCEVFNQLPLACALLDKYNQLTMLNKVALQTLPIQHGYDLFDMVREEEHAMLTDTLHV
VREGVLGQAWCELPLKSIHQLAWLKLSFSQISGDKDTLVMIAEDVSEKYRLADELSFHANYDALTGLPNRLHFEALLENL
LHAHDDMPICVAFLDLDQFQVINNISGHQAGDKLLCQVALRLKQLVRKGDIVARLGGDEFGILMHYCNVDSAKQIAKRIC
TQLANHEFIWEGRSHNVSVSMGIAKLDKKAADIYTVMSQADAACRLAKDQGRNGWHLYSASDPKMNRLYTEMMASVDIVG
ALALNQFELYFQSIVPLNREESGLHLEILLRMVQANGTIVSPAIFLPAAERYNLASKVDLWVIDNLLKWGGCHLDIWQQL
DLVSVNLSATSLGDFEFMNWLEMRLMAEPELVDKLCIEITETAAVSQLDQATKLLDILRPLNCKLALDDFGAGFSSFAYL
KRLNVDFVKVDGQFVVNICEDSADQAIVKSICQLGQDMGFDVVAEFVESQDIGRKLQTLGVDYAQGYAINKPIRLAELTS
GLSRPWLEKRETFAAYPQL

Sequences:

>Translated_739_residues
MLVGLANPLQQALVSIFSESPLETLEQNVDRALETITLQLHCDGVFVLTGSQSLDRLRTRNLYLKPQFAKGQQTRVWPLA
RMPFFRSLVRTPRLLNLPDVNTLPADAQAERALLRDWDVKSLLVLPPVVFGETRIALGAVNCSECCEWSEEFISEFNHAA
VMIGSAMELTRIALSMLASEHKYCEVFNQLPLACALLDKYNQLTMLNKVALQTLPIQHGYDLFDMVREEEHAMLTDTLHV
VREGVLGQAWCELPLKSIHQLAWLKLSFSQISGDKDTLVMIAEDVSEKYRLADELSFHANYDALTGLPNRLHFEALLENL
LHAHDDMPICVAFLDLDQFQVINNISGHQAGDKLLCQVALRLKQLVRKGDIVARLGGDEFGILMHYCNVDSAKQIAKRIC
TQLANHEFIWEGRSHNVSVSMGIAKLDKKAADIYTVMSQADAACRLAKDQGRNGWHLYSASDPKMNRLYTEMMASVDIVG
ALALNQFELYFQSIVPLNREESGLHLEILLRMVQANGTIVSPAIFLPAAERYNLASKVDLWVIDNLLKWGGCHLDIWQQL
DLVSVNLSATSLGDFEFMNWLEMRLMAEPELVDKLCIEITETAAVSQLDQATKLLDILRPLNCKLALDDFGAGFSSFAYL
KRLNVDFVKVDGQFVVNICEDSADQAIVKSICQLGQDMGFDVVAEFVESQDIGRKLQTLGVDYAQGYAINKPIRLAELTS
GLSRPWLEKRETFAAYPQL
>Mature_739_residues
MLVGLANPLQQALVSIFSESPLETLEQNVDRALETITLQLHCDGVFVLTGSQSLDRLRTRNLYLKPQFAKGQQTRVWPLA
RMPFFRSLVRTPRLLNLPDVNTLPADAQAERALLRDWDVKSLLVLPPVVFGETRIALGAVNCSECCEWSEEFISEFNHAA
VMIGSAMELTRIALSMLASEHKYCEVFNQLPLACALLDKYNQLTMLNKVALQTLPIQHGYDLFDMVREEEHAMLTDTLHV
VREGVLGQAWCELPLKSIHQLAWLKLSFSQISGDKDTLVMIAEDVSEKYRLADELSFHANYDALTGLPNRLHFEALLENL
LHAHDDMPICVAFLDLDQFQVINNISGHQAGDKLLCQVALRLKQLVRKGDIVARLGGDEFGILMHYCNVDSAKQIAKRIC
TQLANHEFIWEGRSHNVSVSMGIAKLDKKAADIYTVMSQADAACRLAKDQGRNGWHLYSASDPKMNRLYTEMMASVDIVG
ALALNQFELYFQSIVPLNREESGLHLEILLRMVQANGTIVSPAIFLPAAERYNLASKVDLWVIDNLLKWGGCHLDIWQQL
DLVSVNLSATSLGDFEFMNWLEMRLMAEPELVDKLCIEITETAAVSQLDQATKLLDILRPLNCKLALDDFGAGFSSFAYL
KRLNVDFVKVDGQFVVNICEDSADQAIVKSICQLGQDMGFDVVAEFVESQDIGRKLQTLGVDYAQGYAINKPIRLAELTS
GLSRPWLEKRETFAAYPQL

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=507, Percent_Identity=28.2051282051282, Blast_Score=179, Evalue=7e-46,
Organism=Escherichia coli, GI1788381, Length=447, Percent_Identity=30.8724832214765, Blast_Score=172, Evalue=5e-44,
Organism=Escherichia coli, GI1788849, Length=362, Percent_Identity=30.939226519337, Blast_Score=162, Evalue=7e-41,
Organism=Escherichia coli, GI87081921, Length=430, Percent_Identity=26.2790697674419, Blast_Score=132, Evalue=8e-32,
Organism=Escherichia coli, GI87082096, Length=223, Percent_Identity=35.8744394618834, Blast_Score=125, Evalue=1e-29,
Organism=Escherichia coli, GI1790496, Length=235, Percent_Identity=30.2127659574468, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI87081980, Length=255, Percent_Identity=30.9803921568627, Blast_Score=103, Evalue=6e-23,
Organism=Escherichia coli, GI1789650, Length=449, Percent_Identity=24.7216035634744, Blast_Score=102, Evalue=7e-23,
Organism=Escherichia coli, GI87081881, Length=209, Percent_Identity=33.0143540669856, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI226510982, Length=378, Percent_Identity=27.5132275132275, Blast_Score=95, Evalue=2e-20,
Organism=Escherichia coli, GI1787055, Length=289, Percent_Identity=28.0276816608997, Blast_Score=95, Evalue=2e-20,
Organism=Escherichia coli, GI87081845, Length=248, Percent_Identity=27.4193548387097, Blast_Score=90, Evalue=6e-19,
Organism=Escherichia coli, GI1788085, Length=190, Percent_Identity=31.0526315789474, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI87081977, Length=168, Percent_Identity=35.1190476190476, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1788502, Length=257, Percent_Identity=24.9027237354086, Blast_Score=86, Evalue=8e-18,
Organism=Escherichia coli, GI87082007, Length=179, Percent_Identity=34.0782122905028, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1786507, Length=120, Percent_Identity=35.8333333333333, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1787816, Length=160, Percent_Identity=30.625, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1786584, Length=214, Percent_Identity=28.0373831775701, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1787262, Length=160, Percent_Identity=30.625, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1787802, Length=180, Percent_Identity=28.3333333333333, Blast_Score=77, Evalue=5e-15,
Organism=Escherichia coli, GI145693134, Length=175, Percent_Identity=32, Blast_Score=77, Evalue=6e-15,
Organism=Escherichia coli, GI87081743, Length=225, Percent_Identity=27.1111111111111, Blast_Score=73, Evalue=8e-14,
Organism=Escherichia coli, GI1788956, Length=126, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI87081974, Length=125, Percent_Identity=36.8, Blast_Score=66, Evalue=8e-12,
Organism=Escherichia coli, GI1787410, Length=177, Percent_Identity=26.5536723163842, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 82935; Mature: 82935

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVGLANPLQQALVSIFSESPLETLEQNVDRALETITLQLHCDGVFVLTGSQSLDRLRTR
CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHEEEEEEEECEEEEEECCHHHHHHHHC
NLYLKPQFAKGQQTRVWPLARMPFFRSLVRTPRLLNLPDVNTLPADAQAERALLRDWDVK
CEEECCCCCCCCCCEECCHHHHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHCCCCC
SLLVLPPVVFGETRIALGAVNCSECCEWSEEFISEFNHAAVMIGSAMELTRIALSMLASE
HHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCC
HKYCEVFNQLPLACALLDKYNQLTMLNKVALQTLPIQHGYDLFDMVREEEHAMLTDTLHV
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
VREGVLGQAWCELPLKSIHQLAWLKLSFSQISGDKDTLVMIAEDVSEKYRLADELSFHAN
HHHCCHHHHHHHCCHHHHHHHHHHEEEHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHCCC
YDALTGLPNRLHFEALLENLLHAHDDMPICVAFLDLDQFQVINNISGHQAGDKLLCQVAL
CHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCCCCHHHHHHHHHH
RLKQLVRKGDIVARLGGDEFGILMHYCNVDSAKQIAKRICTQLANHEFIWEGRSHNVSVS
HHHHHHHCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCCCEEEE
MGIAKLDKKAADIYTVMSQADAACRLAKDQGRNGWHLYSASDPKMNRLYTEMMASVDIVG
ECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH
ALALNQFELYFQSIVPLNREESGLHLEILLRMVQANGTIVSPAIFLPAAERYNLASKVDL
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEECCCEECCCHHHCCCHHHHHH
WVIDNLLKWGGCHLDIWQQLDLVSVNLSATSLGDFEFMNWLEMRLMAEPELVDKLCIEIT
HHHHHHHHHCCCCEEHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHH
ETAAVSQLDQATKLLDILRPLNCKLALDDFGAGFSSFAYLKRLNVDFVKVDGQFVVNICE
HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCEEEEECCEEEEEEHH
DSADQAIVKSICQLGQDMGFDVVAEFVESQDIGRKLQTLGVDYAQGYAINKPIRLAELTS
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCEECCCCCHHHHHHC
GLSRPWLEKRETFAAYPQL
CCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure
MLVGLANPLQQALVSIFSESPLETLEQNVDRALETITLQLHCDGVFVLTGSQSLDRLRTR
CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHEEEEEEEECEEEEEECCHHHHHHHHC
NLYLKPQFAKGQQTRVWPLARMPFFRSLVRTPRLLNLPDVNTLPADAQAERALLRDWDVK
CEEECCCCCCCCCCEECCHHHHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHCCCCC
SLLVLPPVVFGETRIALGAVNCSECCEWSEEFISEFNHAAVMIGSAMELTRIALSMLASE
HHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCC
HKYCEVFNQLPLACALLDKYNQLTMLNKVALQTLPIQHGYDLFDMVREEEHAMLTDTLHV
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
VREGVLGQAWCELPLKSIHQLAWLKLSFSQISGDKDTLVMIAEDVSEKYRLADELSFHAN
HHHCCHHHHHHHCCHHHHHHHHHHEEEHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHCCC
YDALTGLPNRLHFEALLENLLHAHDDMPICVAFLDLDQFQVINNISGHQAGDKLLCQVAL
CHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCCCCHHHHHHHHHH
RLKQLVRKGDIVARLGGDEFGILMHYCNVDSAKQIAKRICTQLANHEFIWEGRSHNVSVS
HHHHHHHCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCCCEEEE
MGIAKLDKKAADIYTVMSQADAACRLAKDQGRNGWHLYSASDPKMNRLYTEMMASVDIVG
ECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH
ALALNQFELYFQSIVPLNREESGLHLEILLRMVQANGTIVSPAIFLPAAERYNLASKVDL
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEECCCEECCCHHHCCCHHHHHH
WVIDNLLKWGGCHLDIWQQLDLVSVNLSATSLGDFEFMNWLEMRLMAEPELVDKLCIEIT
HHHHHHHHHCCCCEEHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHH
ETAAVSQLDQATKLLDILRPLNCKLALDDFGAGFSSFAYLKRLNVDFVKVDGQFVVNICE
HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCEEEEECCEEEEEEHH
DSADQAIVKSICQLGQDMGFDVVAEFVESQDIGRKLQTLGVDYAQGYAINKPIRLAELTS
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCEECCCCCHHHHHHC
GLSRPWLEKRETFAAYPQL
CCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]