| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is mpl [H]
Identifier: 160876819
GI number: 160876819
Start: 4382655
End: 4384046
Strand: Reverse
Name: mpl [H]
Synonym: Sbal195_3715
Alternate gene names: 160876819
Gene position: 4384046-4382655 (Counterclockwise)
Preceding gene: 160876820
Following gene: 160876818
Centisome position: 81.99
GC content: 48.42
Gene sequence:
>1392_bases ATGCACGTACATATTTTAGGAATTTGTGGAACCTTCATGGGTGGTCTAGCGTTATTGGCTAGGGCAAAAGGGCACAGAGT GACGGGCTCGGATGCCAATGTCTATCCTCCAATGAGCACGCAACTAGAGGACCAAGGCATTGAGCTTATTCAAGGTTTTG ATCCCAGCCAGCTGGGTGAAGCAGGGCATTATCCTGACTTAGTTGTCATTGGTAATGCCATGAGCCGGGGTAATCCTTGC GTGGAAGCCGTGTTGAACATTGGCATCCCTTATACCTCTGGCCCGCAGTTTTTAGCCGATCATATTTTGCCTGAGCGTTG GGTGCTGGCAGTGTCTGGCACTCACGGTAAAACCTCGACTTCTAGCATGTTAGCCTGGATTTTAGATGATTGCGGTTATG AGCCTGGATTTTTAATCGGTGGCGTACCGCAAAACTTTGGTGTGTCGGCGCGTTTAGGCAAGACCGCTTTCTTTGTGGTT GAGGCCGACGAGTACGACAGTGCCTTCTTCGATAAACGTTCGAAATTCGTGCATTATCATCCACGTACCTTAGTGATCAA CAATCTTGAGTTCGATCATGCTGATATTTTTGCCGATCTGGCCGCGATTCAAAAACAGTTTAATCATTTAGTTCGCACTG TACCTGGCGAAGGAAAGATCGTTTGGCCCGCCGATTCCCATGCCGTTAAGCAAACGATTGATATGGGTTGCTGGAGCGAG CAAGAAACCTATCATTTAGCCGAATCGACCAGCGGTTGGTATGGCAAAGCCTTAAGTGATGATTGCCATCGGTTTGAAGT GTTTTTTGATGGCGAGTCCCAAGGCATTCTCGAATGGGATTTGATTGGTCAGCACAATATTGAAAACGCCATGATGGCCA TTGCTGCCGCGCGTCACGTGGGCGTTAAGCCGAGCGCTGCAATTGAAGCTTTAGCTAAGTTTATGCCACCTAAACGTCGA CTCGAATTACTCGGAACCGTTAACGGCGTGAGCGTTTACGACGACTTTGCCCACCATCCAACTGCGATTGCGACCACGTT AAAAGGCATGCGGGCTAAGGTTGGTCAGAGCAAAATTACTGTGGTACTCGAGCCGCGTTCAAATACCATGAAGAGCGGTG TCCATAAAGACACTTTAGCTTTTTCTATGATGCAAGCCGACGAAGCTTTTTTATATCAAGCCGATACCATTGACTGGAAT ATGAAAGAAGCCATGGAAGCGGCGGTGATCCCTGTGACTGTGTTACATCAAATTGATGATGTGGTCGCCAAAGTAACGGC AACGGCCAAAGCGGGCGACACCATAGTGGTGATGAGTAATGGCGGTTTTGGTGGGTTACATAAGAAGCTGCTGGCCGCAT TAGAGCAGCGTTCAGCTGTAGAGCAGGTTTAA
Upstream 100 bases:
>100_bases TGTCATTTGCGATTGCAGTGCTTTTCGCCGATTGTTACCTGCCAATCTGTCGCCCGATGGATTAGAATGGCATTGAATTC AAAACATCAGAGCGAGCGGT
Downstream 100 bases:
>100_bases GATGAGCTACACAAAGTCGACAAAGGCAATTAGCTTAGCTTGGACAGGCGCCTCGGGCGCCCCCTATGGCCTTAAGTTGC TCGAGTGTCTGTTGGTATCG
Product: UDP-N-acetylmuramate
Products: NA
Alternate protein names: Murein peptide ligase [H]
Number of amino acids: Translated: 463; Mature: 463
Protein sequence:
>463_residues MHVHILGICGTFMGGLALLARAKGHRVTGSDANVYPPMSTQLEDQGIELIQGFDPSQLGEAGHYPDLVVIGNAMSRGNPC VEAVLNIGIPYTSGPQFLADHILPERWVLAVSGTHGKTSTSSMLAWILDDCGYEPGFLIGGVPQNFGVSARLGKTAFFVV EADEYDSAFFDKRSKFVHYHPRTLVINNLEFDHADIFADLAAIQKQFNHLVRTVPGEGKIVWPADSHAVKQTIDMGCWSE QETYHLAESTSGWYGKALSDDCHRFEVFFDGESQGILEWDLIGQHNIENAMMAIAAARHVGVKPSAAIEALAKFMPPKRR LELLGTVNGVSVYDDFAHHPTAIATTLKGMRAKVGQSKITVVLEPRSNTMKSGVHKDTLAFSMMQADEAFLYQADTIDWN MKEAMEAAVIPVTVLHQIDDVVAKVTATAKAGDTIVVMSNGGFGGLHKKLLAALEQRSAVEQV
Sequences:
>Translated_463_residues MHVHILGICGTFMGGLALLARAKGHRVTGSDANVYPPMSTQLEDQGIELIQGFDPSQLGEAGHYPDLVVIGNAMSRGNPC VEAVLNIGIPYTSGPQFLADHILPERWVLAVSGTHGKTSTSSMLAWILDDCGYEPGFLIGGVPQNFGVSARLGKTAFFVV EADEYDSAFFDKRSKFVHYHPRTLVINNLEFDHADIFADLAAIQKQFNHLVRTVPGEGKIVWPADSHAVKQTIDMGCWSE QETYHLAESTSGWYGKALSDDCHRFEVFFDGESQGILEWDLIGQHNIENAMMAIAAARHVGVKPSAAIEALAKFMPPKRR LELLGTVNGVSVYDDFAHHPTAIATTLKGMRAKVGQSKITVVLEPRSNTMKSGVHKDTLAFSMMQADEAFLYQADTIDWN MKEAMEAAVIPVTVLHQIDDVVAKVTATAKAGDTIVVMSNGGFGGLHKKLLAALEQRSAVEQV >Mature_463_residues MHVHILGICGTFMGGLALLARAKGHRVTGSDANVYPPMSTQLEDQGIELIQGFDPSQLGEAGHYPDLVVIGNAMSRGNPC VEAVLNIGIPYTSGPQFLADHILPERWVLAVSGTHGKTSTSSMLAWILDDCGYEPGFLIGGVPQNFGVSARLGKTAFFVV EADEYDSAFFDKRSKFVHYHPRTLVINNLEFDHADIFADLAAIQKQFNHLVRTVPGEGKIVWPADSHAVKQTIDMGCWSE QETYHLAESTSGWYGKALSDDCHRFEVFFDGESQGILEWDLIGQHNIENAMMAIAAARHVGVKPSAAIEALAKFMPPKRR LELLGTVNGVSVYDDFAHHPTAIATTLKGMRAKVGQSKITVVLEPRSNTMKSGVHKDTLAFSMMQADEAFLYQADTIDWN MKEAMEAAVIPVTVLHQIDDVVAKVTATAKAGDTIVVMSNGGFGGLHKKLLAALEQRSAVEQV
Specific function: Reutilizes the intact tripeptide L-alanyl-gamma-D- glutamyl-meso-diaminopimelate by linking it to UDP-N-acetylmuramic acid [H]
COG id: COG0773
COG function: function code M; UDP-N-acetylmuramate-alanine ligase
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MurCDEF family [H]
Homologues:
Organism=Escherichia coli, GI1790680, Length=463, Percent_Identity=62.6349892008639, Blast_Score=591, Evalue=1e-170, Organism=Escherichia coli, GI1786279, Length=384, Percent_Identity=27.34375, Blast_Score=114, Evalue=9e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004101 - InterPro: IPR013221 - InterPro: IPR000713 - InterPro: IPR005757 - InterPro: IPR016040 [H]
Pfam domain/function: PF01225 Mur_ligase; PF02875 Mur_ligase_C; PF08245 Mur_ligase_M [H]
EC number: 6.3.2.- [C]
Molecular weight: Translated: 50373; Mature: 50373
Theoretical pI: Translated: 5.97; Mature: 5.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHVHILGICGTFMGGLALLARAKGHRVTGSDANVYPPMSTQLEDQGIELIQGFDPSQLGE CEEEEEEHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHCC AGHYPDLVVIGNAMSRGNPCVEAVLNIGIPYTSGPQFLADHILPERWVLAVSGTHGKTST CCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCH SSMLAWILDDCGYEPGFLIGGVPQNFGVSARLGKTAFFVVEADEYDSAFFDKRSKFVHYH HHHHHHHHHHCCCCCCEEECCCCCCCCCEEECCCEEEEEEECCCCCHHHHHCCCCEEEEC PRTLVINNLEFDHADIFADLAAIQKQFNHLVRTVPGEGKIVWPADSHAVKQTIDMGCWSE CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHCCCCCC QETYHLAESTSGWYGKALSDDCHRFEVFFDGESQGILEWDLIGQHNIENAMMAIAAARHV CCCEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHC GVKPSAAIEALAKFMPPKRRLELLGTVNGVSVYDDFAHHPTAIATTLKGMRAKVGQSKIT CCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCEEE VVLEPRSNTMKSGVHKDTLAFSMMQADEAFLYQADTIDWNMKEAMEAAVIPVTVLHQIDD EEECCCCCHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH VVAKVTATAKAGDTIVVMSNGGFGGLHKKLLAALEQRSAVEQV HHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MHVHILGICGTFMGGLALLARAKGHRVTGSDANVYPPMSTQLEDQGIELIQGFDPSQLGE CEEEEEEHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHCC AGHYPDLVVIGNAMSRGNPCVEAVLNIGIPYTSGPQFLADHILPERWVLAVSGTHGKTST CCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCH SSMLAWILDDCGYEPGFLIGGVPQNFGVSARLGKTAFFVVEADEYDSAFFDKRSKFVHYH HHHHHHHHHHCCCCCCEEECCCCCCCCCEEECCCEEEEEEECCCCCHHHHHCCCCEEEEC PRTLVINNLEFDHADIFADLAAIQKQFNHLVRTVPGEGKIVWPADSHAVKQTIDMGCWSE CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHCCCCCC QETYHLAESTSGWYGKALSDDCHRFEVFFDGESQGILEWDLIGQHNIENAMMAIAAARHV CCCEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHC GVKPSAAIEALAKFMPPKRRLELLGTVNGVSVYDDFAHHPTAIATTLKGMRAKVGQSKIT CCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCEEE VVLEPRSNTMKSGVHKDTLAFSMMQADEAFLYQADTIDWNMKEAMEAAVIPVTVLHQIDD EEECCCCCHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH VVAKVTATAKAGDTIVVMSNGGFGGLHKKLLAALEQRSAVEQV HHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503; 2843822; 7984428; 8808921 [H]