| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is mvaB [H]
Identifier: 160876087
GI number: 160876087
Start: 3536749
End: 3537672
Strand: Direct
Name: mvaB [H]
Synonym: Sbal195_2977
Alternate gene names: 160876087
Gene position: 3536749-3537672 (Clockwise)
Preceding gene: 160876086
Following gene: 160876088
Centisome position: 66.14
GC content: 51.95
Gene sequence:
>924_bases ATGTCGTTAGTCAATCTAAGCCAAGCTGCGGACGCCAAAGACAGGGTCAGTATCTTCGAGATGGGCGCGCGCGACGGCCT GCAAAACGAAGTCGCTGTGCCAACGGCAGCTAAAATCGCCTTGATTGAATCGCTGGCAGATGCAGGGCTTAAGCGCATCG AAGCCGGCAGTTTTGTGTCACCCAAATGGGTGCCACAAATGGCCGATTCTGCCGATGTGCTCAAGCAAATACAGCGTCAA AGCGGCGTGGTGTATAGCGCGCTCACGCCCAACGTCAAAGGCTTTGAACTGGCACTGGATGCAAAAGCTTCCGAAGTAGC GATATTTGGCGCCGCCTCACAAAGCTTTAGTCAACGCAATATCAACTGCTCGATTGAAGAGTCGATTGAACGCTTTATCC CTTTGATGGAATTAGCAAAAGCGCACAATATTCCAGTGCGCGGCTATGTGTCCTGCGTGCTCGGCTGCCCCTACGAAGGT GAAATAACGGTCAGTGAAGTGGCCCGCGTGTCTGAAATCCTTTACAAAATGGGCTGTTACGAAATATCGCTCGGCGACAC TATCGGTGTAGGCACGCCGCAAAAAGCCCGTAGAATGCTGCAAACCGTTGCTGAACATGTGCCTATGGACAAACTGGCGC TACACTTTCACGACACCTATGGCCAAGCATTAGCTAACATTTTGGCCTGCTTAGACTTAGGTGTGCGGGTGTTTGACTCC TCGGTTGCAGGTCTTGGTGGCTGCCCCTATGCCAAAGGCGCATCGGGCAATCTCGCCACCGAAGACTTAGTGTATATGCT GCACGGCATGGGATTAGAAACGGGTATCGATTTACAAAAACTCGCTTTAGCAGGACAAGCCATCAGCACGCAGTTGAATC GCAACAACGGCTCGAAAGTGGCCACAGCCCTGTTAGCAAAATAG
Upstream 100 bases:
>100_bases TTCTACTTTAAGGCGGGCGAGCTGGTGACCGATGGCGCAACCTTGCTTAACGTTGAGCCGTTAGAGACAGACGAGCCAAC CGCGACCAAGGAAGCCTAAG
Downstream 100 bases:
>100_bases AACAACAATAATTAACGACAACAACCGTTATTGAAAACGCGCGTTATTTCCCGCGCGTTTTATACAGCATAAAAGGACAT CACAATGGCAGGACTCAATA
Product: pyruvate carboxyltransferase
Products: NA
Alternate protein names: HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase [H]
Number of amino acids: Translated: 307; Mature: 306
Protein sequence:
>307_residues MSLVNLSQAADAKDRVSIFEMGARDGLQNEVAVPTAAKIALIESLADAGLKRIEAGSFVSPKWVPQMADSADVLKQIQRQ SGVVYSALTPNVKGFELALDAKASEVAIFGAASQSFSQRNINCSIEESIERFIPLMELAKAHNIPVRGYVSCVLGCPYEG EITVSEVARVSEILYKMGCYEISLGDTIGVGTPQKARRMLQTVAEHVPMDKLALHFHDTYGQALANILACLDLGVRVFDS SVAGLGGCPYAKGASGNLATEDLVYMLHGMGLETGIDLQKLALAGQAISTQLNRNNGSKVATALLAK
Sequences:
>Translated_307_residues MSLVNLSQAADAKDRVSIFEMGARDGLQNEVAVPTAAKIALIESLADAGLKRIEAGSFVSPKWVPQMADSADVLKQIQRQ SGVVYSALTPNVKGFELALDAKASEVAIFGAASQSFSQRNINCSIEESIERFIPLMELAKAHNIPVRGYVSCVLGCPYEG EITVSEVARVSEILYKMGCYEISLGDTIGVGTPQKARRMLQTVAEHVPMDKLALHFHDTYGQALANILACLDLGVRVFDS SVAGLGGCPYAKGASGNLATEDLVYMLHGMGLETGIDLQKLALAGQAISTQLNRNNGSKVATALLAK >Mature_306_residues SLVNLSQAADAKDRVSIFEMGARDGLQNEVAVPTAAKIALIESLADAGLKRIEAGSFVSPKWVPQMADSADVLKQIQRQS GVVYSALTPNVKGFELALDAKASEVAIFGAASQSFSQRNINCSIEESIERFIPLMELAKAHNIPVRGYVSCVLGCPYEGE ITVSEVARVSEILYKMGCYEISLGDTIGVGTPQKARRMLQTVAEHVPMDKLALHFHDTYGQALANILACLDLGVRVFDSS VAGLGGCPYAKGASGNLATEDLVYMLHGMGLETGIDLQKLALAGQAISTQLNRNNGSKVATALLAK
Specific function: Involved in the catabolism of branched amino acids such as leucine (Probable) [H]
COG id: COG0119
COG function: function code E; Isopropylmalate/homocitrate/citramalate synthases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HMG-CoA lyase family [H]
Homologues:
Organism=Homo sapiens, GI62198232, Length=301, Percent_Identity=61.4617940199336, Blast_Score=370, Evalue=1e-103, Organism=Homo sapiens, GI109150422, Length=298, Percent_Identity=58.7248322147651, Blast_Score=359, Evalue=1e-99, Organism=Homo sapiens, GI109150427, Length=298, Percent_Identity=58.7248322147651, Blast_Score=359, Evalue=2e-99, Organism=Homo sapiens, GI260654708, Length=136, Percent_Identity=66.1764705882353, Blast_Score=182, Evalue=4e-46, Organism=Escherichia coli, GI1786261, Length=295, Percent_Identity=26.7796610169492, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17510563, Length=298, Percent_Identity=51.006711409396, Blast_Score=316, Evalue=1e-86, Organism=Drosophila melanogaster, GI24582381, Length=293, Percent_Identity=61.7747440273038, Blast_Score=375, Evalue=1e-104,
Paralogues:
None
Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR000138 - InterPro: IPR000891 [H]
Pfam domain/function: PF00682 HMGL-like [H]
EC number: =4.1.3.4 [H]
Molecular weight: Translated: 32632; Mature: 32501
Theoretical pI: Translated: 5.69; Mature: 5.69
Prosite motif: PS01062 HMG_COA_LYASE ; PS50991 PYR_CT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLVNLSQAADAKDRVSIFEMGARDGLQNEVAVPTAAKIALIESLADAGLKRIEAGSFVS CCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC PKWVPQMADSADVLKQIQRQSGVVYSALTPNVKGFELALDAKASEVAIFGAASQSFSQRN CCCCHHHCCHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCEEEEEECCCHHHHHCC INCSIEESIERFIPLMELAKAHNIPVRGYVSCVLGCPYEGEITVSEVARVSEILYKMGCY CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHCCE EISLGDTIGVGTPQKARRMLQTVAEHVPMDKLALHFHDTYGQALANILACLDLGVRVFDS EEECCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC SVAGLGGCPYAKGASGNLATEDLVYMLHGMGLETGIDLQKLALAGQAISTQLNRNNGSKV HHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHH ATALLAK HHHHHCC >Mature Secondary Structure SLVNLSQAADAKDRVSIFEMGARDGLQNEVAVPTAAKIALIESLADAGLKRIEAGSFVS CCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC PKWVPQMADSADVLKQIQRQSGVVYSALTPNVKGFELALDAKASEVAIFGAASQSFSQRN CCCCHHHCCHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCEEEEEECCCHHHHHCC INCSIEESIERFIPLMELAKAHNIPVRGYVSCVLGCPYEGEITVSEVARVSEILYKMGCY CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHCCE EISLGDTIGVGTPQKARRMLQTVAEHVPMDKLALHFHDTYGQALANILACLDLGVRVFDS EEECCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC SVAGLGGCPYAKGASGNLATEDLVYMLHGMGLETGIDLQKLALAGQAISTQLNRNNGSKV HHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHH ATALLAK HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2687236; 2656635; 1637819 [H]